ONTOLOGY REPORT - ANNOTATIONS


Term:pattern specification process
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Accession:GO:0007389 term browser browse the term
Definition:Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.
Synonyms:related_synonym: pattern biosynthesis;   pattern formation


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pattern specification process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACVR1 activin A receptor type 1 JBrowse link 36 3,743,257 3,818,659 RGD:9068941
G ACVR1B activin A receptor type 1B JBrowse link 27 3,009,710 3,029,726 RGD:9068941
G ACVR1C activin A receptor type 1C JBrowse link 36 3,534,231 3,583,310 RGD:9068941
G ACVR2A activin A receptor type 2A JBrowse link 19 49,642,429 49,726,720 RGD:9068941
G ACVR2B activin A receptor type 2B JBrowse link 23 8,211,555 8,225,596 RGD:9068941
G ACVRL1 activin A receptor like type 1 JBrowse link 27 3,075,373 3,090,549 RGD:9068941
G ALX3 ALX homeobox 3 JBrowse link 6 41,899,288 41,907,832 RGD:9068941
G AMHR2 anti-Mullerian hormone receptor type 2 JBrowse link 27 1,788,420 1,795,601 RGD:9068941
G APC APC regulator of WNT signaling pathway JBrowse link 3 252,052 380,506 RGD:9068941
G APC2 APC regulator of WNT signaling pathway 2 JBrowse link 20 57,380,472 57,395,249 RGD:9068941
G ASPH aspartate beta-hydroxylase JBrowse link 29 11,812,275 12,022,755 RGD:9068941
G BMP5 bone morphogenetic protein 5 JBrowse link 12 23,089,429 23,202,176 RGD:13508589
RGD:9068941
G BMPR1A bone morphogenetic protein receptor type 1A JBrowse link 4 34,499,898 34,582,481 RGD:9068941
G BMPR1B bone morphogenetic protein receptor type 1B JBrowse link 32 17,761,555 17,978,056 RGD:9068941
G BMPR2 bone morphogenetic protein receptor type 2 JBrowse link 37 11,342,292 11,540,199 RGD:9068941
G DCHS1 dachsous cadherin-related 1 JBrowse link 21 29,927,713 29,955,742 RGD:9068941
G EYA1 EYA transcriptional coactivator and phosphatase 1 JBrowse link 29 20,176,306 20,595,131 RGD:13508589
RGD:9068941
G FOXJ1 forkhead box J1 JBrowse link 9 4,512,898 4,517,764 RGD:9068941
G GLI2 GLI family zinc finger 2 JBrowse link 19 29,128,401 29,383,324 RGD:9068941
G GRHL3 grainyhead like transcription factor 3 JBrowse link 2 75,290,594 75,324,593 RGD:13508589
RGD:9068941
G HOXB1 homeobox B1 JBrowse link 9 24,791,848 24,795,443 RGD:9068941
G HOXD12 homeobox D12 JBrowse link 36 19,907,424 19,910,827 RGD:9068941
RGD:13508589
G LHX1 LIM homeobox 1 JBrowse link 9 36,760,890 36,768,345 RGD:13508589
RGD:9068941
G LOC611554 zinc finger protein ZIC 1 JBrowse link 23 42,536,406 42,537,757 RGD:9068941
G MFNG MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase JBrowse link 10 27,082,616 27,098,994 RGD:13508589
RGD:9068941
G MID1 midline 1 JBrowse link X 7,087,890 7,438,553 RGD:9068941
G NRG3 neuregulin 3 JBrowse link 4 30,515,845 31,557,598 RGD:9068941
G RAX retina and anterior neural fold homeobox JBrowse link 1 16,940,671 16,945,127 RGD:9068941
G RFNG RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase JBrowse link 9 265,771 270,780 RGD:9068941
G RNF111 ring finger protein 111 JBrowse link 30 23,934,156 24,027,529 RGD:9068941
G SHH sonic hedgehog signaling molecule JBrowse link 16 18,650,553 18,663,571 RGD:9068941
G SHROOM3 shroom family member 3 JBrowse link 32 1,218,513 1,392,014 RGD:9068941
G SIX1 SIX homeobox 1 JBrowse link 8 35,676,705 35,679,534 RGD:13508589
RGD:9068941
G SOSTDC1 sclerostin domain containing 1 JBrowse link 14 31,022,599 31,027,155 RGD:9068941
G SYNGAP1 synaptic Ras GTPase activating protein 1 JBrowse link 12 2,829,274 2,862,888 RGD:9068941
G TBX1 T-box 1 JBrowse link 26 29,529,071 29,533,240 RGD:9068941
G TBX5 T-box 5 JBrowse link 26 11,462,541 11,549,699 RGD:13508589
RGD:9068941
G TGFBR1 transforming growth factor beta receptor 1 JBrowse link 11 56,191,383 56,223,042 RGD:9068941
G TGFBR2 transforming growth factor beta receptor 2 JBrowse link 23 13,886,869 13,946,480 RGD:9068941
G UNCX UNC homeobox JBrowse link 6 15,652,600 15,657,016 RGD:9068941
G ZEB1 zinc finger E-box binding homeobox 1 JBrowse link 2 15,300,401 15,481,535 RGD:13508589
RGD:9068941
activation of prostate induction by androgen receptor signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AR androgen receptor JBrowse link 24
X
34,713,390
51,969,785
34,731,461
52,167,450
RGD:9068941
anterior compartment pattern formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PBX3 PBX homeobox 3 JBrowse link 9 57,198,531 57,429,820 RGD:9068941
anterior/posterior axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AURKA aurora kinase A JBrowse link 24 41,585,483 41,604,875 RGD:9068941
G BMP4 bone morphogenetic protein 4 JBrowse link 8 29,997,563 30,254,307 RGD:13508589
RGD:9068941
G CDX1 caudal type homeobox 1 JBrowse link 4 58,897,914 58,915,573 RGD:9068941
G CDX2 caudal type homeobox 2 JBrowse link 25 11,701,134 11,707,883 RGD:9068941
G CDX4 caudal type homeobox 4 JBrowse link X 57,123,670 57,135,557 RGD:9068941
G CER1 cerberus 1, DAN family BMP antagonist JBrowse link 11 35,155,568 35,159,085 RGD:13508589
RGD:9068941
G CTNNB1 catenin beta 1 JBrowse link 23 10,559,722 10,572,933 RGD:13508589
RGD:9068941
G GPC3 glypican 3 JBrowse link X 104,313,426 104,751,215 RGD:13508589
RGD:9068941
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 JBrowse link 1 64,630,656 64,646,546 RGD:9068941
G LDB1 LIM domain binding 1 JBrowse link 28 14,646,409 14,658,324 RGD:9068941
G LHX1 LIM homeobox 1 JBrowse link 9 36,760,890 36,768,345 RGD:13508589
RGD:9068941
G PGAP1 post-GPI attachment to proteins 1 JBrowse link 37 6,430,344 6,499,310 RGD:9068941
G RNF2 ring finger protein 2 JBrowse link 7 18,240,672 18,283,091 RGD:9068941
G SIX2 SIX homeobox 2 JBrowse link 10 47,399,152 47,403,503 RGD:13508589
RGD:9068941
G SKI SKI proto-oncogene JBrowse link 5 57,144,178 57,216,385 RGD:9068941
G WLS Wnt ligand secretion mediator JBrowse link 6 77,053,242 77,146,549 RGD:13508589
RGD:9068941
G WNT3 Wnt family member 3 JBrowse link 9 10,073,019 10,124,454 RGD:9068941
anterior/posterior axis specification, embryo term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FRS2 fibroblast growth factor receptor substrate 2 JBrowse link 10 11,445,843 11,552,325 RGD:13508589
RGD:9068941
G FZD5 frizzled class receptor 5 JBrowse link 37 16,123,788 16,126,634 RGD:13508589
RGD:9068941
G HOXD8 homeobox D8 JBrowse link 36 19,938,916 19,941,092 RGD:9068941
G TBX3 T-box 3 JBrowse link 26 11,694,885 11,709,594 RGD:9068941
G TBXT T-box transcription factor T JBrowse link 1 54,183,495 54,192,331 RGD:9068941
G TDGF1 teratocarcinoma-derived growth factor 1 JBrowse link 20 42,137,939 42,140,590 RGD:9068941
G WNT5A Wnt family member 5A JBrowse link 20 34,756,430 34,790,937 RGD:13508589
RGD:9068941
anterior/posterior pattern specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACVR2A activin A receptor type 2A JBrowse link 19 49,642,429 49,726,720 RGD:13508589
RGD:9068941
G ACVR2B activin A receptor type 2B JBrowse link 23 8,211,555 8,225,596 RGD:9068941
G ALX1 ALX homeobox 1 JBrowse link 15 26,838,615 26,858,786 RGD:9068941
G ALX4 ALX homeobox 4 JBrowse link 18 44,922,042 44,967,557 RGD:13508589
RGD:9068941
G BARX1 BARX homeobox 1 JBrowse link 1 98,036,444 98,039,818 RGD:13508589
RGD:9068941
G BMPR2 bone morphogenetic protein receptor type 2 JBrowse link 37 11,342,292 11,540,199 RGD:9068941
G BPTF bromodomain PHD finger transcription factor JBrowse link 9 12,586,107 12,703,296 RGD:9068941
G BTG2 BTG anti-proliferation factor 2 JBrowse link 38 70,921 75,149 RGD:9068941
G CDON cell adhesion associated, oncogene regulated JBrowse link 5 8,439,606 8,536,088 RGD:13508589
RGD:9068941
G CELSR1 cadherin EGF LAG seven-pass G-type receptor 1 JBrowse link 10 19,704,104 19,836,886 RGD:9068941
G CER1 cerberus 1, DAN family BMP antagonist JBrowse link 11 35,155,568 35,159,085 RGD:9068941
G CFC1 cripto, FRL-1, cryptic family 1 JBrowse link 19 20,318,937 20,384,369 RGD:9068941
G CRKL CRK like proto-oncogene, adaptor protein JBrowse link 26 30,542,276 30,582,479 RGD:13508589
RGD:9068941
G CYP26C1 cytochrome P450, family 26, subfamily C, polypeptide 1 JBrowse link 28 7,416,022 7,424,173 RGD:9068941
G EMX2 empty spiracles homeobox 2 JBrowse link 28 28,002,966 28,009,955 RGD:13508589
RGD:9068941
G GLI2 GLI family zinc finger 2 JBrowse link 19 29,128,401 29,383,324 RGD:9068941
G GLI3 GLI family zinc finger 3 JBrowse link 18 7,800,817 8,071,531 RGD:13508589
RGD:9068941
G GRSF1 G-rich RNA sequence binding factor 1 JBrowse link 13 60,088,198 60,102,292 RGD:9068941
G HHEX hematopoietically expressed homeobox JBrowse link 28 7,057,379 7,063,326 RGD:9068941
G HIPK1 homeodomain interacting protein kinase 1 JBrowse link 17 51,732,079 51,783,534 RGD:9068941
G HIPK2 homeodomain interacting protein kinase 2 JBrowse link 16 9,066,957 9,256,916 RGD:9068941
G HNF1B HNF1 homeobox B JBrowse link 9 37,437,992 37,493,200 RGD:13508589
RGD:9068941
G HOXA10 homeobox A10 JBrowse link 14 40,346,462 40,348,900 RGD:9068941
G HOXA11 homeobox A11 JBrowse link 14 40,355,907 40,360,120 RGD:13508589
RGD:9068941
G HOXA2 homeobox A2 JBrowse link 14 40,273,992 40,276,975 RGD:9068941
G HOXA3 homeobox A3 JBrowse link 14 40,280,866 40,326,559 RGD:9068941
G HOXA4 homeobox A4 JBrowse link 14 40,302,106 40,304,437 RGD:9068941
G HOXA5 homeobox A5 JBrowse link 14 40,315,409 40,319,001 RGD:9068941
G HOXA6 homeobox A6 JBrowse link 14 40,319,505 40,321,838 RGD:9068941
G HOXA7 homeobox A7 JBrowse link 14 40,327,918 40,334,073 RGD:9068941
G HOXA9 homeobox A9 JBrowse link 14 40,336,829 40,340,533 RGD:13508589
RGD:9068941
G HOXB1 homeobox B1 JBrowse link 9 24,791,848 24,795,443 RGD:13508589
RGD:9068941
G HOXB2 homeobox B2 JBrowse link 9 24,803,996 24,810,109 RGD:13508589
RGD:9068941
G HOXB3 homeobox B3 JBrowse link 9 24,810,299 24,837,434 RGD:9068941
G HOXB4 homeobox B4 JBrowse link 9 24,837,572 24,848,600 RGD:9068941
G HOXB5 homeobox B5 JBrowse link 9 24,853,759 24,856,478 RGD:9068941
G HOXB6 homeobox B6 JBrowse link 9 24,858,416 24,862,360 RGD:9068941
G HOXB7 homeobox B7 JBrowse link 9 24,870,037 24,874,517 RGD:9068941
G HOXB8 homeobox B8 JBrowse link 9 24,874,893 24,888,981 RGD:13508589
RGD:9068941
G HOXB9 homeobox B9 JBrowse link 9 24,884,101 24,889,904 RGD:13508589
RGD:9068941
G HOXC10 homeobox C10 JBrowse link 27 1,272,272 1,277,411 RGD:13508589
RGD:9068941
G HOXC11 homeobox C11 JBrowse link 27 1,287,326 1,289,577 RGD:13508589
RGD:9068941
G HOXC13 homeobox C13 JBrowse link 27 1,315,532 1,323,470 RGD:13508589
RGD:9068941
G HOXC4 homeobox C4 JBrowse link 27 1,209,510 1,246,873 RGD:9068941
G HOXC5 homeobox C5 JBrowse link 27 1,227,739 1,232,802 RGD:9068941
G HOXC6 homeobox C6 JBrowse link 27 1,233,749 1,246,874 RGD:9068941
G HOXD10 homeobox D10 JBrowse link 36 19,924,352 19,927,706 RGD:13508589
RGD:9068941
G HOXD13 homeobox D13 JBrowse link 36 19,901,184 19,903,837 RGD:9068941
G HOXD3 homeobox D3 JBrowse link 36 19,961,393 19,981,672 RGD:9068941
G HOXD9 homeobox D9 JBrowse link 36 19,929,479 19,932,861 RGD:9068941
G KIF3A kinesin family member 3A JBrowse link 11 20,988,516 21,044,151 RGD:9068941
G LHX1 LIM homeobox 1 JBrowse link 9 36,760,890 36,768,345 RGD:13508589
RGD:9068941
G LOC479600 beta-catenin-interacting protein 1 JBrowse link 5 62,937,154 63,093,083 RGD:13508589
G LOC607625 translation initiation factor IF-2 JBrowse link 27 1,251,314 1,262,809 RGD:9068941
G LRP5 LDL receptor related protein 5 JBrowse link 18 49,439,494 49,555,375 RGD:9068941
G LRP6 LDL receptor related protein 6 JBrowse link 27 34,003,334 34,166,334 RGD:9068941
G MLLT3 MLLT3, super elongation complex subunit JBrowse link 11 39,923,165 40,203,574 RGD:13508589
RGD:9068941
G MSX1 msh homeobox 1 JBrowse link 3 70,232,790 70,236,295 RGD:9068941
G MSX2 msh homeobox 2 JBrowse link 4 38,002,724 38,007,407 RGD:13508589
RGD:9068941
G NEUROD1 neuronal differentiation 1 JBrowse link 36 24,853,591 24,857,886 RGD:9068941
G NR2F2 nuclear receptor subfamily 2 group F member 2 JBrowse link 3 44,135,143 44,148,836 RGD:9068941
G OTX1 orthodenticle homeobox 1 JBrowse link 10 62,830,515 62,836,449 RGD:13508589
RGD:9068941
G PBX1 PBX homeobox 1 JBrowse link 38 18,378,997 18,703,694 RGD:9068941
G PCGF2 polycomb group ring finger 2 JBrowse link 9 23,488,862 23,499,769 RGD:9068941
G PCSK5 proprotein convertase subtilisin/kexin type 5 JBrowse link 1 82,088,090 82,506,131 RGD:9068941
G RARG retinoic acid receptor gamma JBrowse link 27 1,958,432 1,978,471 RGD:13508589
RGD:9068941
G RING1 ring finger protein 1 JBrowse link 12 2,671,578 2,675,488 RGD:13508589
RGD:9068941
G SCMH1 Scm polycomb group protein homolog 1 JBrowse link 15 1,917,503 2,056,325 RGD:13508589
RGD:9068941
G SMAD2 SMAD family member 2 JBrowse link 7 43,696,883 43,778,063 RGD:13508589
RGD:9068941
G SMO smoothened, frizzled class receptor JBrowse link 14 7,518,871 7,527,703 RGD:13508589
RGD:9068941
G TBX1 T-box 1 JBrowse link 26 29,529,071 29,533,240 RGD:9068941
G TDGF1 teratocarcinoma-derived growth factor 1 JBrowse link 20 42,137,939 42,140,590 RGD:9068941
G TGFBR1 transforming growth factor beta receptor 1 JBrowse link 11 56,191,383 56,223,042 RGD:9068941
G TSHZ1 teashirt zinc finger homeobox 1 JBrowse link 1 4,224,875 4,229,755 RGD:9068941
G TULP3 tubby like protein 3 JBrowse link 27 41,819,574 41,884,198 RGD:13508589
RGD:9068941
G YY1 YY1 transcription factor JBrowse link 8 68,539,511 68,572,796 RGD:13508589
G ZBTB16 zinc finger and BTB domain containing 16 JBrowse link 5 19,082,594 19,284,360 RGD:13508589
RGD:9068941
G ZIC3 Zic family member 3 JBrowse link X 107,822,002 107,833,582 RGD:13508589
RGD:9068941
axis elongation involved in somitogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LRP6 LDL receptor related protein 6 JBrowse link 27 34,003,334 34,166,334 RGD:9068941
G MED12 mediator complex subunit 12 JBrowse link X 55,487,629 55,508,941 RGD:9068941
G WNT3A Wnt family member 3A JBrowse link 14 864,393 899,698 RGD:9068941
axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G WNT6 Wnt family member 6 JBrowse link 37 25,452,875 25,457,437 RGD:13508589
RGD:9068941
BMP signaling pathway involved in heart induction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP2 bone morphogenetic protein 2 JBrowse link 24 15,199,667 15,211,509 RGD:13508589
RGD:9068941
G BMP4 bone morphogenetic protein 4 JBrowse link 8 29,997,563 30,254,307 RGD:13508589
RGD:9068941
G POU5F1 POU class 5 homeobox 1 JBrowse link 12 860,702 866,099 RGD:9068941
BMP signaling pathway involved in renal system segmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 8 29,997,563 30,254,307 RGD:13508589
RGD:9068941
BMP signaling pathway involved in spinal cord dorsal/ventral patterning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CHRD chordin JBrowse link 34 17,255,770 17,264,776 RGD:9068941
brain segmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EGR2 early growth response 2 JBrowse link 4 14,705,384 14,810,130 RGD:13508589
RGD:9068941
G HOXA2 homeobox A2 JBrowse link 14 40,273,992 40,276,975 RGD:13508589
RGD:9068941
G MAFB MAF bZIP transcription factor B JBrowse link 24 28,769,904 28,772,519 RGD:9068941
cerebral cortex regionalization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADGRG1 adhesion G protein-coupled receptor G1 JBrowse link 2 58,805,737 58,842,618 RGD:9068941
G DMRTA2 DMRT like family A2 JBrowse link 15 10,706,096 10,710,506 RGD:9068941
G EMX1 empty spiracles homeobox 1 JBrowse link 17 49,901,919 49,924,466 RGD:9068941
G EMX2 empty spiracles homeobox 2 JBrowse link 28 28,002,966 28,009,955 RGD:13508589
RGD:9068941
G EOMES eomesodermin JBrowse link 23 16,476,498 16,512,406 RGD:9068941
G TRA2B transformer 2 beta homolog JBrowse link 34 18,637,725 18,656,869 RGD:9068941
compartment pattern specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DLL1 delta like canonical Notch ligand 1 JBrowse link 12 72,265,078 72,272,347 RGD:13508589
RGD:9068941
G DLL3 delta like canonical Notch ligand 3 JBrowse link 1 113,737,662 113,745,936 RGD:9068941
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase JBrowse link 6 14,631,638 14,640,147 RGD:9068941
G NOTCH1 notch receptor 1 JBrowse link 9 48,975,972 49,018,985 RGD:9068941
convergent extension involved in somitogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SFRP1 secreted frizzled related protein 1 JBrowse link 16 24,262,451 24,306,162 RGD:9068941
detection of nodal flow term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PKD1L1 polycystin 1 like 1, transient receptor potential channel interacting JBrowse link 16 119,639 199,418 RGD:9068941
G PKD2 polycystin 2, transient receptor potential cation channel JBrowse link 32 11,383,441 11,437,603 RGD:9068941
determination of bilateral symmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 JBrowse link 30 23,074,432 23,170,374 RGD:13508589
RGD:9068941
determination of digestive tract left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCDC103 coiled-coil domain containing 103 JBrowse link 9 18,581,544 18,585,939 RGD:9068941
G CCDC39 coiled-coil domain containing 39 JBrowse link 34 13,915,763 13,959,574 RGD:9068941
G CCDC40 coiled-coil domain containing 40 JBrowse link 9 1,616,029 1,656,043 RGD:9068941
G DNAAF1 dynein axonemal assembly factor 1 JBrowse link 5 68,184,532 68,205,651 RGD:13508589
RGD:9068941
G MEGF8 multiple EGF like domains 8 JBrowse link 1 112,020,344 112,063,120 RGD:9068941
G ZIC3 Zic family member 3 JBrowse link X 107,822,002 107,833,582 RGD:13508589
RGD:9068941
determination of dorsal identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CER1 cerberus 1, DAN family BMP antagonist JBrowse link 11 35,155,568 35,159,085 RGD:13508589
RGD:9068941
G GREM1 gremlin 1, DAN family BMP antagonist JBrowse link 30 2,219,535 2,231,868 RGD:13508589
RGD:9068941
G GREM2 gremlin 2, DAN family BMP antagonist JBrowse link 7 32,048,151 32,157,698 RGD:13508589
RGD:9068941
G LOC487403 neuroblastoma suppressor of tumorigenicity 1 JBrowse link 2 79,040,206 79,102,792 RGD:9068941
G WNT8B Wnt family member 8B JBrowse link 28 13,187,927 13,210,398 RGD:9068941
determination of heart left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CER1 cerberus 1, DAN family BMP antagonist JBrowse link 11 35,155,568 35,159,085 RGD:9068941
G DAND5 DAN domain BMP antagonist family member 5 JBrowse link 20 49,225,351 49,228,940 RGD:9068941
G DNAH11 dynein axonemal heavy chain 11 JBrowse link 14 35,468,080 35,784,621 RGD:9068941
G MEGF8 multiple EGF like domains 8 JBrowse link 1 112,020,344 112,063,120 RGD:9068941
G MMP21 matrix metallopeptidase 21 JBrowse link 28 34,936,976 34,944,110 RGD:9068941
RGD:13508589
G TBXT T-box transcription factor T JBrowse link 1 54,183,495 54,192,331 RGD:13508589
RGD:9068941
determination of intestine left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NPHP3 nephrocystin 3 JBrowse link 23 29,662,486 29,703,629 RGD:9068941
determination of left/right asymmetry in lateral mesoderm term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DAND5 DAN domain BMP antagonist family member 5 JBrowse link 20 49,225,351 49,228,940 RGD:9068941
G SHH sonic hedgehog signaling molecule JBrowse link 16 18,650,553 18,663,571 RGD:13508589
RGD:9068941
G SMO smoothened, frizzled class receptor JBrowse link 14 7,518,871 7,527,703 RGD:13508589
RGD:9068941
determination of left/right asymmetry in nervous system term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DNAH11 dynein axonemal heavy chain 11 JBrowse link 14 35,468,080 35,784,621 RGD:9068941
G ZIC3 Zic family member 3 JBrowse link X 107,822,002 107,833,582 RGD:13508589
RGD:9068941
determination of left/right symmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACVR1 activin A receptor type 1 JBrowse link 36 3,743,257 3,818,659 RGD:9068941
G ACVR2A activin A receptor type 2A JBrowse link 19 49,642,429 49,726,720 RGD:13508589
RGD:9068941
G ACVR2B activin A receptor type 2B JBrowse link 23 8,211,555 8,225,596 RGD:9068941
G ALG5 ALG5 dolichyl-phosphate beta-glucosyltransferase JBrowse link 25 3,705,521 3,753,987 RGD:13508589
RGD:9068941
G AP1B1 adaptor related protein complex 1 subunit beta 1 JBrowse link 26 22,632,970 22,715,449 RGD:9068941
G ARL6 ADP ribosylation factor like GTPase 6 JBrowse link 33 4,797,944 4,857,566 RGD:9068941
G ARMC4 armadillo repeat containing 4 JBrowse link 2 18,177,141 18,322,316 RGD:9068941
G BBS7 Bardet-Biedl syndrome 7 JBrowse link 19 18,280,487 18,319,128 RGD:9068941
G BICC1 BicC family RNA binding protein 1 JBrowse link 4 10,735,307 11,006,650 RGD:9068941
G C9H9orf116 chromosome 9 C9orf116 homolog JBrowse link 9 51,207,491 51,209,955 RGD:9068941
G CC2D2A coiled-coil and C2 domain containing 2A JBrowse link 3 64,731,165 64,867,743 RGD:13508589
RGD:9068941
G CCDC151 coiled-coil domain containing 151 JBrowse link 20 49,917,183 49,926,417 RGD:13508589
RGD:9068941
G CCDC39 coiled-coil domain containing 39 JBrowse link 34 13,915,763 13,959,574 RGD:13508589
G CFAP53 cilia and flagella associated protein 53 JBrowse link 7 78,612,226 78,649,518 RGD:13508589
RGD:9068941
G CFC1 cripto, FRL-1, cryptic family 1 JBrowse link 19 20,318,937 20,384,369 RGD:9068941
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 JBrowse link 1 31,522,911 31,525,342 RGD:9068941
G DAAM2 dishevelled associated activator of morphogenesis 2 JBrowse link 12 8,686,653 8,801,903 RGD:9068941
G DISP1 dispatched RND transporter family member 1 JBrowse link 38 23,716,436 23,871,497 RGD:9068941
G DLL1 delta like canonical Notch ligand 1 JBrowse link 12 72,265,078 72,272,347 RGD:9068941
G DNAAF4 dynein axonemal assembly factor 4 JBrowse link 30 20,778,497 20,871,304 RGD:9068941
G DNAH11 dynein axonemal heavy chain 11 JBrowse link 14 35,468,080 35,784,621 RGD:9068941
G DNAH5 dynein axonemal heavy chain 5 JBrowse link 34 816,088 1,040,052 RGD:9068941
G DNAI1 dynein axonemal intermediate chain 1 JBrowse link 11 51,080,080 51,205,381 RGD:9068941
G DNAI2 dynein axonemal intermediate chain 2 JBrowse link 9 6,085,021 6,114,187 RGD:13508589
RGD:9068941
G DPCD deleted in primary ciliary dyskinesia homolog JBrowse link 28 14,201,302 14,219,121 RGD:13508589
RGD:9068941
G DRC1 dynein regulatory complex subunit 1 JBrowse link 17 20,479,290 20,517,960 RGD:13508589
RGD:9068941
G DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 JBrowse link 10 46,231,433 46,270,102 RGD:13508589
RGD:9068941
G FGF10 fibroblast growth factor 10 JBrowse link 4 65,851,130 65,930,944 RGD:13508589
RGD:9068941
G FOXF1 forkhead box F1 JBrowse link 5 66,343,776 66,347,785 RGD:9068941
G FOXJ1 forkhead box J1 JBrowse link 9 4,512,898 4,517,764 RGD:13508589
RGD:9068941
G GALNT11 polypeptide N-acetylgalactosaminyltransferase 11 JBrowse link 16 15,901,246 15,951,732 RGD:9068941
G GAS8 growth arrest specific 8 JBrowse link 5 63,589,196 63,609,014 RGD:9068941
G IFT140 intraflagellar transport 140 JBrowse link 6 39,262,887 39,308,912 RGD:9068941
G IFT74 intraflagellar transport 74 JBrowse link 11 45,159,124 45,242,019 RGD:13508589
RGD:9068941
G KIF3B kinesin family member 3B JBrowse link 24 21,661,730 21,706,839 RGD:9068941
G MKKS McKusick-Kaufman syndrome JBrowse link 24 11,887,504 11,914,055 RGD:9068941
G MKS1 MKS transition zone complex subunit 1 JBrowse link 9 32,865,972 32,878,712 RGD:13508589
RGD:9068941
G MMP21 matrix metallopeptidase 21 JBrowse link 28 34,936,976 34,944,110 RGD:9068941
G NEK8 NIMA related kinase 8 JBrowse link 9 42,923,208 42,933,083 RGD:9068941
G NKX3-2 NK3 homeobox 2 JBrowse link 3 66,543,046 66,546,779 RGD:13508589
RGD:9068941
G NOTCH1 notch receptor 1 JBrowse link 9 48,975,972 49,018,985 RGD:9068941
G NPHP3 nephrocystin 3 JBrowse link 23 29,662,486 29,703,629 RGD:9068941
G PCSK5 proprotein convertase subtilisin/kexin type 5 JBrowse link 1 82,088,090 82,506,131 RGD:9068941
G PCSK6 proprotein convertase subtilisin/kexin type 6 JBrowse link 3 39,582,804 39,768,838 RGD:13508589
RGD:9068941
G PITX2 paired like homeodomain 2 JBrowse link 32 30,710,161 30,730,162 RGD:13508589
RGD:9068941
G PKD2 polycystin 2, transient receptor potential cation channel JBrowse link 32 11,383,441 11,437,603 RGD:9068941
G PSKH1 protein serine kinase H1 JBrowse link 5 81,567,665 81,596,382 RGD:13508589
RGD:9068941
G RIPPLY2 ripply transcriptional repressor 2 JBrowse link 12 44,144,821 44,168,236 RGD:9068941
G RPGRIP1L RPGRIP1 like JBrowse link 2 62,080,159 62,179,694 RGD:9068941
G RTTN rotatin JBrowse link 1 8,180,831 8,326,947 RGD:13508589
RGD:9068941
G STIL STIL centriolar assembly protein JBrowse link 15 13,369,292 13,431,677 RGD:9068941
G TBC1D32 TBC1 domain family member 32 JBrowse link 1 60,662,704 60,873,881 RGD:9068941
G TBX1 T-box 1 JBrowse link 26 29,529,071 29,533,240 RGD:9068941
G TDGF1 teratocarcinoma-derived growth factor 1 JBrowse link 20 42,137,939 42,140,590 RGD:9068941
G ZIC3 Zic family member 3 JBrowse link X 107,822,002 107,833,582 RGD:9068941
determination of liver left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCDC39 coiled-coil domain containing 39 JBrowse link 34 13,915,763 13,959,574 RGD:9068941
G CCDC40 coiled-coil domain containing 40 JBrowse link 9 1,616,029 1,656,043 RGD:9068941
G DNAAF1 dynein axonemal assembly factor 1 JBrowse link 5 68,184,532 68,205,651 RGD:13508589
RGD:9068941
G NPHP3 nephrocystin 3 JBrowse link 23 29,662,486 29,703,629 RGD:9068941
G PKD2 polycystin 2, transient receptor potential cation channel JBrowse link 32 11,383,441 11,437,603 RGD:9068941
G ZIC3 Zic family member 3 JBrowse link X 107,822,002 107,833,582 RGD:13508589
RGD:9068941
determination of pancreatic left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCDC39 coiled-coil domain containing 39 JBrowse link 34 13,915,763 13,959,574 RGD:9068941
G CCDC40 coiled-coil domain containing 40 JBrowse link 9 1,616,029 1,656,043 RGD:9068941
G DNAAF1 dynein axonemal assembly factor 1 JBrowse link 5 68,184,532 68,205,651 RGD:13508589
RGD:9068941
G NPHP3 nephrocystin 3 JBrowse link 23 29,662,486 29,703,629 RGD:9068941
G ZIC3 Zic family member 3 JBrowse link X 107,822,002 107,833,582 RGD:13508589
RGD:9068941
determination of stomach left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NPHP3 nephrocystin 3 JBrowse link 23 29,662,486 29,703,629 RGD:9068941
determination of ventral identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AIDA axin interactor, dorsalization associated JBrowse link 38 16,938,279 16,971,200 RGD:9068941
dorsal/ventral axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMPR1A bone morphogenetic protein receptor type 1A JBrowse link 4 34,499,898 34,582,481 RGD:13508589
RGD:9068941
G CTNNB1 catenin beta 1 JBrowse link 23 10,559,722 10,572,933 RGD:13508589
RGD:9068941
G MDFI MyoD family inhibitor JBrowse link 12 10,324,499 10,339,699 RGD:9068941
G SFRP1 secreted frizzled related protein 1 JBrowse link 16 24,262,451 24,306,162 RGD:9068941
G VAX2 ventral anterior homeobox 2 JBrowse link 10 69,252,926 69,262,225 RGD:9068941
G WNT3 Wnt family member 3 JBrowse link 9 10,073,019 10,124,454 RGD:9068941
dorsal/ventral neural tube patterning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 8 29,997,563 30,254,307 RGD:13508589
RGD:9068941
G FKBP8 FKBP prolyl isomerase 8 JBrowse link 20 44,494,856 44,504,084 RGD:9068941
G FOXA1 forkhead box A1 JBrowse link 8 16,072,629 16,083,105 RGD:9068941
G GSC goosecoid homeobox JBrowse link 8 63,684,149 63,707,030 RGD:9068941
G KIF3A kinesin family member 3A JBrowse link 11 20,988,516 21,044,151 RGD:9068941
G PAX7 paired box 7 JBrowse link 2 79,813,835 79,952,490 RGD:9068941
G PSEN1 presenilin 1 JBrowse link 8 46,495,551 46,569,532 RGD:13508589
RGD:9068941
G SHH sonic hedgehog signaling molecule JBrowse link 16 18,650,553 18,663,571 RGD:13508589
RGD:9068941
G SMO smoothened, frizzled class receptor JBrowse link 14 7,518,871 7,527,703 RGD:13508589
RGD:9068941
G TCTN1 tectonic family member 1 JBrowse link 26 8,411,429 8,444,640 RGD:9068941
G WNT3A Wnt family member 3A JBrowse link 14 864,393 899,698 RGD:9068941
dorsal/ventral pattern formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AIDA axin interactor, dorsalization associated JBrowse link 38 16,938,279 16,971,200 RGD:9068941
G ARL13B ADP ribosylation factor like GTPase 13B JBrowse link 33 1,698,360 1,762,846 RGD:13508589
RGD:9068941
G BMPR1B bone morphogenetic protein receptor type 1B JBrowse link 32 17,761,555 17,978,056 RGD:13508589
RGD:9068941
G DISP1 dispatched RND transporter family member 1 JBrowse link 38 23,716,436 23,871,497 RGD:9068941
G DSCAML1 DS cell adhesion molecule like 1 JBrowse link 5 15,839,504 16,187,465 RGD:9068941
G EDN1 endothelin 1 JBrowse link 35 11,808,892 11,815,383 RGD:13508589
RGD:9068941
G EN1 engrailed homeobox 1 JBrowse link 19 31,124,325 31,129,538 RGD:9068941
G FBXL15 F-box and leucine rich repeat protein 15 JBrowse link 28 14,927,740 14,929,867 RGD:13508589
RGD:9068941
G FOXG1 forkhead box G1 JBrowse link 8 8,276,300 8,279,785 RGD:9068941
G GLI1 GLI family zinc finger 1 JBrowse link 10 1,565,306 1,575,971 RGD:13508589
RGD:9068941
G GLI3 GLI family zinc finger 3 JBrowse link 18 7,800,817 8,071,531 RGD:13508589
RGD:9068941
G HHIP hedgehog interacting protein JBrowse link 15 43,432,464 43,525,973 RGD:9068941
G HOXA11 homeobox A11 JBrowse link 14 40,355,907 40,360,120 RGD:13508589
RGD:9068941
G HOXA2 homeobox A2 JBrowse link 14 40,273,992 40,276,975 RGD:13508589
RGD:9068941
G HOXB2 homeobox B2 JBrowse link 9 24,803,996 24,810,109 RGD:13508589
RGD:9068941
G HOXD11 homeobox D11 JBrowse link 36 19,913,064 19,926,868 RGD:9068941
G IFT172 intraflagellar transport 172 JBrowse link 17 21,389,462 21,426,970 RGD:13508589
RGD:9068941
G IFT52 intraflagellar transport 52 JBrowse link 24 31,295,987 31,334,825 RGD:13508589
RGD:9068941
G LHX1 LIM homeobox 1 JBrowse link 9 36,760,890 36,768,345 RGD:13508589
RGD:9068941
G LHX2 LIM homeobox 2 JBrowse link 9 58,825,505 58,859,311 RGD:13508589
RGD:9068941
G LMX1B LIM homeobox transcription factor 1 beta JBrowse link 9 56,542,844 56,625,609 RGD:9068941
G LRP4 LDL receptor related protein 4 JBrowse link 18 42,616,683 42,667,297 RGD:13508589
RGD:9068941
G NOG noggin JBrowse link 9 31,453,604 31,456,060 RGD:9068941
G OVOL2 ovo like zinc finger 2 JBrowse link 24 5,020,608 5,050,487 RGD:9068941
G PROP1 PROP paired-like homeobox 1 JBrowse link 11 2,739,958 2,742,576 RGD:13508589
RGD:9068941
G PTCH1 patched 1 JBrowse link 1 71,246,750 71,309,036 RGD:9068941
G SHH sonic hedgehog signaling molecule JBrowse link 16 18,650,553 18,663,571 RGD:9068941
G TBX20 T-box 20 JBrowse link 14 46,891,706 46,946,899 RGD:13508589
RGD:9068941
G WNT7A Wnt family member 7A JBrowse link 20 4,072,010 4,139,521 RGD:13508589
RGD:9068941
embryonic axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 JBrowse link X 56,327,104 56,332,608 RGD:9068941
G COBL cordon-bleu WH2 repeat protein JBrowse link 18 2,206,957 2,386,333 RGD:9068941
G CTNNB1 catenin beta 1 JBrowse link 23 10,559,722 10,572,933 RGD:13508589
RGD:9068941
G FZD5 frizzled class receptor 5 JBrowse link 37 16,123,788 16,126,634 RGD:9068941
G STIL STIL centriolar assembly protein JBrowse link 15 13,369,292 13,431,677 RGD:9068941
G WNT1 Wnt family member 1 JBrowse link 27 5,588,151 5,592,254 RGD:13508589
RGD:9068941
G WNT7A Wnt family member 7A JBrowse link 20 4,072,010 4,139,521 RGD:13508589
RGD:9068941
embryonic heart tube anterior/posterior pattern specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP2 bone morphogenetic protein 2 JBrowse link 24 15,199,667 15,211,509 RGD:13508589
RGD:9068941
G FOXH1 forkhead box H1 JBrowse link 13 37,883,554 37,887,324 RGD:9068941
G GATA4 GATA binding protein 4 JBrowse link 25 26,126,172 26,211,474 RGD:9068941
embryonic heart tube left/right pattern formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 JBrowse link 1 31,522,911 31,525,342 RGD:13508589
RGD:9068941
G IFT122 intraflagellar transport 122 JBrowse link 20 5,644,002 5,716,702 RGD:9068941
G MEGF8 multiple EGF like domains 8 JBrowse link 1 112,020,344 112,063,120 RGD:9068941
G NKX2-5 NK2 homeobox 5 JBrowse link 4 39,240,755 39,254,585 RGD:13508589
RGD:9068941
embryonic pattern specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP7 bone morphogenetic protein 7 JBrowse link 24 42,203,183 42,294,105 RGD:13508589
RGD:9068941
G DISP1 dispatched RND transporter family member 1 JBrowse link 38 23,716,436 23,871,497 RGD:9068941
G EFNB1 ephrin B1 JBrowse link X 53,292,407 53,303,824 RGD:13508589
RGD:9068941
G ERBB4 erb-b2 receptor tyrosine kinase 4 JBrowse link 37 19,029,647 20,134,576 RGD:9068941
G FGF10 fibroblast growth factor 10 JBrowse link 4 65,851,130 65,930,944 RGD:13508589
RGD:9068941
G FGFR2 fibroblast growth factor receptor 2 JBrowse link 28 31,303,882 31,411,015 RGD:9068941
G IHH Indian hedgehog signaling molecule JBrowse link 37 25,616,942 25,622,989 RGD:9068941
G LHX1 LIM homeobox 1 JBrowse link 9 36,760,890 36,768,345 RGD:13508589
RGD:9068941
G LRP6 LDL receptor related protein 6 JBrowse link 27 34,003,334 34,166,334 RGD:9068941
G NODAL nodal growth differentiation factor JBrowse link 4 21,366,828 21,374,623 RGD:13508589
RGD:9068941
G PGAP1 post-GPI attachment to proteins 1 JBrowse link 37 6,430,344 6,499,310 RGD:9068941
G RIPPLY1 ripply transcriptional repressor 1 JBrowse link X 80,457,529 80,461,281 RGD:9068941
G RIPPLY2 ripply transcriptional repressor 2 JBrowse link 12 44,144,821 44,168,236 RGD:9068941
G RIPPLY3 ripply transcriptional repressor 3 JBrowse link 31 32,150,768 32,188,604 RGD:9068941
G SATB2 SATB homeobox 2 JBrowse link 37 8,548,295 8,837,416 RGD:9068941
G SHH sonic hedgehog signaling molecule JBrowse link 16 18,650,553 18,663,571 RGD:9068941
G SIM2 SIM bHLH transcription factor 2 JBrowse link 31 31,879,483 31,929,531 RGD:9068941
G SMAD1 SMAD family member 1 JBrowse link 15 44,093,491 44,171,177 RGD:9068941
G SMAD3 SMAD family member 3 JBrowse link 30 31,246,313 31,360,098 RGD:13508589
RGD:9068941
G SMAD5 SMAD family member 5 JBrowse link 11 24,027,603 24,082,673 RGD:9068941
G ZBTB16 zinc finger and BTB domain containing 16 JBrowse link 5 19,082,594 19,284,360 RGD:13508589
RGD:9068941
epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NODAL nodal growth differentiation factor JBrowse link 4 21,366,828 21,374,623 RGD:13508589
RGD:9068941
epithelial cilium movement involved in determination of left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCDC103 coiled-coil domain containing 103 JBrowse link 9 18,581,544 18,585,939 RGD:9068941
G CCDC39 coiled-coil domain containing 39 JBrowse link 34 13,915,763 13,959,574 RGD:13508589
RGD:9068941
G CCDC40 coiled-coil domain containing 40 JBrowse link 9 1,616,029 1,656,043 RGD:9068941
G CFAP53 cilia and flagella associated protein 53 JBrowse link 7 78,612,226 78,649,518 RGD:9068941
G DNAAF1 dynein axonemal assembly factor 1 JBrowse link 5 68,184,532 68,205,651 RGD:9068941
G DNAH11 dynein axonemal heavy chain 11 JBrowse link 14 35,468,080 35,784,621 RGD:9068941
G LRRC6 leucine rich repeat containing 6 JBrowse link 13 29,128,500 29,199,354 RGD:9068941
G NPHP3 nephrocystin 3 JBrowse link 23 29,662,486 29,703,629 RGD:9068941
G OFD1 OFD1, centriole and centriolar satellite protein JBrowse link X 10,140,439 10,194,478 RGD:9068941
G RFX3 regulatory factor X3 JBrowse link 1 91,773,492 92,060,895 RGD:9068941
establishment of anatomical structure orientation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TTC8 tetratricopeptide repeat domain 8 JBrowse link 8 60,061,670 60,115,464 RGD:9068941
establishment of animal organ orientation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IRX4 iroquois homeobox 4 JBrowse link 34 10,926,042 10,929,142 RGD:9068941
G WNT8A Wnt family member 8A JBrowse link 11 25,707,058 25,752,724 RGD:9068941
fibroblast growth factor receptor signaling pathway involved in mammary gland specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FGF10 fibroblast growth factor 10 JBrowse link 4 65,851,130 65,930,944 RGD:13508589
RGD:9068941
G FGFR2 fibroblast growth factor receptor 2 JBrowse link 28 31,303,882 31,411,015 RGD:9068941
fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NOG noggin JBrowse link 9 31,453,604 31,456,060 RGD:9068941
forebrain anterior/posterior pattern specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FEZF1 FEZ family zinc finger 1 JBrowse link 14 60,095,926 60,100,978 RGD:9068941
G FEZF2 FEZ family zinc finger 2 JBrowse link 20 28,704,287 28,708,620 RGD:9068941
G SIX3 SIX homeobox 3 JBrowse link 10 47,332,875 47,369,359 RGD:9068941
G WNT1 Wnt family member 1 JBrowse link 27 5,588,151 5,592,254 RGD:13508589
RGD:9068941
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FGF8 fibroblast growth factor 8 JBrowse link 28 14,362,407 14,367,109 RGD:9068941
G GLI3 GLI family zinc finger 3 JBrowse link 18 7,800,817 8,071,531 RGD:13508589
RGD:9068941
G GSX2 GS homeobox 2 JBrowse link 13 46,640,172 46,642,405 RGD:9068941
G SIX3 SIX homeobox 3 JBrowse link 10 47,332,875 47,369,359 RGD:9068941
G TTC21B tetratricopeptide repeat domain 21B JBrowse link 36 11,009,362 11,086,586 RGD:13508589
RGD:9068941
forebrain regionalization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LHX1 LIM homeobox 1 JBrowse link 9 36,760,890 36,768,345 RGD:13508589
RGD:9068941
G PGAP1 post-GPI attachment to proteins 1 JBrowse link 37 6,430,344 6,499,310 RGD:9068941
G WNT2B Wnt family member 2B JBrowse link 17 63,034,719 63,054,369 RGD:13508589
RGD:9068941
G WNT7B Wnt family member 7B JBrowse link 10 20,160,916 20,208,786 RGD:9068941
growth plate cartilage axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G STC1 stanniocalcin 1 JBrowse link 25 33,615,436 33,628,138 RGD:13508589
RGD:9068941
heart looping term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHI1 Abelson helper integration site 1 JBrowse link 1 27,966,101 28,199,163 RGD:13508589
RGD:9068941
G ARL13B ADP ribosylation factor like GTPase 13B JBrowse link 33 1,698,360 1,762,846 RGD:13508589
RGD:9068941
G BBS4 Bardet-Biedl syndrome 4 JBrowse link 30 36,058,932 36,109,206 RGD:9068941
G BBS5 Bardet-Biedl syndrome 5 JBrowse link 36 14,206,917 14,233,726 RGD:9068941
G BBS7 Bardet-Biedl syndrome 7 JBrowse link 19 18,280,487 18,319,128 RGD:9068941
G CCDC103 coiled-coil domain containing 103 JBrowse link 9 18,581,544 18,585,939 RGD:9068941
G CCDC39 coiled-coil domain containing 39 JBrowse link 34 13,915,763 13,959,574 RGD:9068941
G CCDC40 coiled-coil domain containing 40 JBrowse link 9 1,616,029 1,656,043 RGD:9068941
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 JBrowse link 1 31,522,911 31,525,342 RGD:13508589
RGD:9068941
G DLL1 delta like canonical Notch ligand 1 JBrowse link 12 72,265,078 72,272,347 RGD:13508589
RGD:9068941
G DNAAF1 dynein axonemal assembly factor 1 JBrowse link 5 68,184,532 68,205,651 RGD:13508589
RGD:9068941
G ENG endoglin JBrowse link 9 55,558,246 55,590,081 RGD:9068941
G FGF8 fibroblast growth factor 8 JBrowse link 28 14,362,407 14,367,109 RGD:9068941
G FOLR1 folate receptor 1 JBrowse link 21 25,944,350 25,951,010 RGD:9068941
G FOXH1 forkhead box H1 JBrowse link 13 37,883,554 37,887,324 RGD:9068941
G FOXN4 forkhead box N4 JBrowse link 26 17,730,638 17,757,173 RGD:9068941
G GATA4 GATA binding protein 4 JBrowse link 25 26,126,172 26,211,474 RGD:9068941
G GJA1 gap junction protein alpha 1 JBrowse link 1 60,941,772 60,944,694 RGD:13508589
G HAND1 heart and neural crest derivatives expressed 1 JBrowse link 4 55,231,061 55,234,640 RGD:13508589
RGD:9068941
G HAND2 heart and neural crest derivatives expressed 2 JBrowse link 25 24,140,496 24,143,143 RGD:9068941
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 8 36,614,045 36,656,692 RGD:13508589
RGD:9068941
G IFT172 intraflagellar transport 172 JBrowse link 17 21,389,462 21,426,970 RGD:13508589
RGD:9068941
G IFT52 intraflagellar transport 52 JBrowse link 24 31,295,987 31,334,825 RGD:13508589
RGD:9068941
G IFT57 intraflagellar transport 57 JBrowse link 33 13,432,902 13,486,692 RGD:13508589
RGD:9068941
G IHH Indian hedgehog signaling molecule JBrowse link 37 25,616,942 25,622,989 RGD:9068941
G KIF3A kinesin family member 3A JBrowse link 11 20,988,516 21,044,151 RGD:9068941
G LBX1 ladybird homeobox 1 JBrowse link 28 13,872,846 13,875,521 RGD:9068941
G MEF2C myocyte enhancer factor 2C JBrowse link 3 19,778,997 19,948,203 RGD:13508589
RGD:9068941
G MESP1 mesoderm posterior bHLH transcription factor 1 JBrowse link 3 52,738,333 52,739,962 RGD:9068941
G MIB1 mindbomb E3 ubiquitin protein ligase 1 JBrowse link 7 66,173,414 66,289,477 RGD:9068941
G MICAL2 microtubule associated monooxygenase, calponin and LIM domain containing 2 JBrowse link 21 35,153,467 35,290,062 RGD:9068941
G MKKS McKusick-Kaufman syndrome JBrowse link 24 11,887,504 11,914,055 RGD:9068941
G NDRG4 NDRG family member 4 JBrowse link 2 58,144,113 58,160,885 RGD:9068941
G NKX2-5 NK2 homeobox 5 JBrowse link 4 39,240,755 39,254,585 RGD:13508589
RGD:9068941
G NODAL nodal growth differentiation factor JBrowse link 4 21,366,828 21,374,623 RGD:13508589
RGD:9068941
G NOTCH1 notch receptor 1 JBrowse link 9 48,975,972 49,018,985 RGD:9068941
G NPHP3 nephrocystin 3 JBrowse link 23 29,662,486 29,703,629 RGD:9068941
G OVOL2 ovo like zinc finger 2 JBrowse link 24 5,020,608 5,050,487 RGD:9068941
G PKD2 polycystin 2, transient receptor potential cation channel JBrowse link 32 11,383,441 11,437,603 RGD:9068941
G PSEN1 presenilin 1 JBrowse link 8 46,495,551 46,569,532 RGD:13508589
RGD:9068941
G SETDB2 SET domain bifurcated histone lysine methyltransferase 2 JBrowse link 22 2,263,990 2,319,249 RGD:9068941
G SHH sonic hedgehog signaling molecule JBrowse link 16 18,650,553 18,663,571 RGD:13508589
RGD:9068941
G SMAD3 SMAD family member 3 JBrowse link 30 31,246,313 31,360,098 RGD:13508589
RGD:9068941
G SMO smoothened, frizzled class receptor JBrowse link 14 7,518,871 7,527,703 RGD:13508589
RGD:9068941
G SOX17 SRY-box 17 JBrowse link 29 5,979,092 5,981,504 RGD:9068941
G SOX18 SRY-box 18 JBrowse link 24 47,494,581 47,496,563 RGD:9068941
G SRF serum response factor JBrowse link 12 11,664,441 11,673,846 RGD:13508589
RGD:9068941
G STIL STIL centriolar assembly protein JBrowse link 15 13,369,292 13,431,677 RGD:9068941
G SUFU SUFU negative regulator of hedgehog signaling JBrowse link 28 14,992,989 15,115,499 RGD:13508589
RGD:9068941
G TBX2 T-box 2 JBrowse link 9 35,237,323 35,245,066 RGD:13508589
RGD:9068941
G TBX20 T-box 20 JBrowse link 14 46,891,706 46,946,899 RGD:13508589
RGD:9068941
G TBX3 T-box 3 JBrowse link 26 11,694,885 11,709,594 RGD:9068941
G TGFBR2 transforming growth factor beta receptor 2 JBrowse link 23 13,886,869 13,946,480 RGD:13508589
RGD:9068941
G TMED2 transmembrane p24 trafficking protein 2 JBrowse link 26 6,039,046 6,047,490 RGD:9068941
RGD:13508589
G UCP3 uncoupling protein 3 JBrowse link 21 24,272,522 24,290,304 RGD:9068941
G WNT3A Wnt family member 3A JBrowse link 14 864,393 899,698 RGD:9068941
G WNT5A Wnt family member 5A JBrowse link 20 34,756,430 34,790,937 RGD:13508589
RGD:9068941
G ZIC3 Zic family member 3 JBrowse link X 107,822,002 107,833,582 RGD:13508589
RGD:9068941
left/right axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHI1 Abelson helper integration site 1 JBrowse link 1 27,966,101 28,199,163 RGD:13508589
RGD:9068941
G ARL13B ADP ribosylation factor like GTPase 13B JBrowse link 33 1,698,360 1,762,846 RGD:13508589
RGD:9068941
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 JBrowse link 1 31,522,911 31,525,342 RGD:13508589
RGD:9068941
G DLL1 delta like canonical Notch ligand 1 JBrowse link 12 72,265,078 72,272,347 RGD:13508589
RGD:9068941
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 JBrowse link 19 29,916,994 30,063,243 RGD:13508589
RGD:9068941
G HSPB11 heat shock protein family B (small) member 11 JBrowse link 5 55,042,926 55,070,204 RGD:13508589
RGD:9068941
G IFT172 intraflagellar transport 172 JBrowse link 17 21,389,462 21,426,970 RGD:13508589
RGD:9068941
G MNS1 meiosis specific nuclear structural 1 JBrowse link 30 21,648,709 21,682,650 RGD:9068941
G NOTCH1 notch receptor 1 JBrowse link 9 48,975,972 49,018,985 RGD:9068941
G PITX2 paired like homeodomain 2 JBrowse link 32 30,710,161 30,730,162 RGD:13508589
RGD:9068941
G PKD1L1 polycystin 1 like 1, transient receptor potential channel interacting JBrowse link 16 119,639 199,418 RGD:9068941
G SETDB2 SET domain bifurcated histone lysine methyltransferase 2 JBrowse link 22 2,263,990 2,319,249 RGD:9068941
G SMO smoothened, frizzled class receptor JBrowse link 14 7,518,871 7,527,703 RGD:13508589
RGD:9068941
left/right pattern formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DNAAF1 dynein axonemal assembly factor 1 JBrowse link 5 68,184,532 68,205,651 RGD:13508589
RGD:9068941
G DPCD deleted in primary ciliary dyskinesia homolog JBrowse link 28 14,201,302 14,219,121 RGD:13508589
RGD:9068941
G FOXJ1 forkhead box J1 JBrowse link 9 4,512,898 4,517,764 RGD:13508589
RGD:9068941
G IFT57 intraflagellar transport 57 JBrowse link 33 13,432,902 13,486,692 RGD:13508589
RGD:9068941
G MEGF8 multiple EGF like domains 8 JBrowse link 1 112,020,344 112,063,120 RGD:9068941
G SNAI1 snail family transcriptional repressor 1 JBrowse link 24 36,498,343 36,503,623 RGD:9068941
lung induction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTNNB1 catenin beta 1 JBrowse link 23 10,559,722 10,572,933 RGD:13508589
RGD:9068941
G WNT2 Wnt family member 2 JBrowse link 14 56,123,735 56,172,113 RGD:13508589
RGD:9068941
G WNT2B Wnt family member 2B JBrowse link 17 63,034,719 63,054,369 RGD:13508589
RGD:9068941
lung proximal/distal axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FGF10 fibroblast growth factor 10 JBrowse link 4 65,851,130 65,930,944 RGD:13508589
RGD:9068941
mammary gland specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GLI3 GLI family zinc finger 3 JBrowse link 18 7,800,817 8,071,531 RGD:13508589
RGD:9068941
midbrain-hindbrain boundary development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EN1 engrailed homeobox 1 JBrowse link 19 31,124,325 31,129,538 RGD:9068941
G FGF8 fibroblast growth factor 8 JBrowse link 28 14,362,407 14,367,109 RGD:9068941
G LRP6 LDL receptor related protein 6 JBrowse link 27 34,003,334 34,166,334 RGD:9068941
midbrain-hindbrain boundary initiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SSBP3 single stranded DNA binding protein 3 JBrowse link 5 54,690,632 54,826,691 RGD:9068941
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G WNT1 Wnt family member 1 JBrowse link 27 5,588,151 5,592,254 RGD:13508589
RGD:9068941
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GBX2 gastrulation brain homeobox 2 JBrowse link 25 47,005,509 47,008,367 RGD:13508589
RGD:9068941
G HES3 hes family bHLH transcription factor 3 JBrowse link 5 60,134,351 60,136,924 RGD:9068941
G KDM2B lysine demethylase 2B JBrowse link 26 7,625,857 7,746,049 RGD:13508589
RGD:9068941
negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TBX18 T-box 18 JBrowse link 12 44,901,076 44,929,730 RGD:9068941
negative regulation of determination of dorsal identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DDIT3 DNA damage inducible transcript 3 JBrowse link 10 1,606,693 1,612,410 RGD:13508589
RGD:9068941
G SOSTDC1 sclerostin domain containing 1 JBrowse link 14 31,022,599 31,027,155 RGD:9068941
negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FUZ fuzzy planar cell polarity protein JBrowse link 1 106,742,381 106,752,543 RGD:9068941
negative regulation of heart induction by canonical Wnt signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G WNT3A Wnt family member 3A JBrowse link 14 864,393 899,698 RGD:9068941
negative regulation of heart looping term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TBX2 T-box 2 JBrowse link 9 35,237,323 35,245,066 RGD:9068941
negative regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CER1 cerberus 1, DAN family BMP antagonist JBrowse link 11 35,155,568 35,159,085 RGD:9068941
G DAND5 DAN domain BMP antagonist family member 5 JBrowse link 20 49,225,351 49,228,940 RGD:9068941
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase JBrowse link 6 14,631,638 14,640,147 RGD:9068941
G NRARP NOTCH regulated ankyrin repeat protein JBrowse link 9 48,394,568 48,396,849 RGD:13508589
RGD:9068941
negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GPR161 G protein-coupled receptor 161 JBrowse link 7 30,364,999 30,411,038 RGD:13508589
RGD:9068941
G PRKACA protein kinase cAMP-activated catalytic subunit alpha JBrowse link 20 48,416,730 48,425,237 RGD:9068941
G PRKACB protein kinase cAMP-activated catalytic subunit beta JBrowse link 6 63,615,445 63,729,386 RGD:13508589
RGD:9068941
G SUFU SUFU negative regulator of hedgehog signaling JBrowse link 28 14,992,989 15,115,499 RGD:13508589
RGD:9068941
G TRAF3IP1 TRAF3 interacting protein 1 JBrowse link 25 48,782,448 48,836,993 RGD:9068941
G TULP3 tubby like protein 3 JBrowse link 27 41,819,574 41,884,198 RGD:13508589
RGD:9068941
negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IFT122 intraflagellar transport 122 JBrowse link 20 5,644,002 5,716,702 RGD:9068941
G RFX4 regulatory factor X4 JBrowse link 10 31,993,339 32,155,896 RGD:9068941
G TULP3 tubby like protein 3 JBrowse link 27 41,819,574 41,884,198 RGD:13508589
RGD:9068941
negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SFRP1 secreted frizzled related protein 1 JBrowse link 16 24,262,451 24,306,162 RGD:9068941
neural plate anterior/posterior regionalization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CELSR2 cadherin EGF LAG seven-pass G-type receptor 2 JBrowse link 6 42,547,638 42,573,407 RGD:9068941
neural plate axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PTCH1 patched 1 JBrowse link 1 71,246,750 71,309,036 RGD:9068941
G UCP3 uncoupling protein 3 JBrowse link 21 24,272,522 24,290,304 RGD:9068941
neural plate mediolateral regionalization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMPR1A bone morphogenetic protein receptor type 1A JBrowse link 4 34,499,898 34,582,481 RGD:13508589
RGD:9068941
neural tube patterning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ARL13B ADP ribosylation factor like GTPase 13B JBrowse link 33 1,698,360 1,762,846 RGD:13508589
RGD:9068941
G IFT140 intraflagellar transport 140 JBrowse link 6 39,262,887 39,308,912 RGD:9068941
G PTCH1 patched 1 JBrowse link 1 71,246,750 71,309,036 RGD:9068941
G RPGRIP1L RPGRIP1 like JBrowse link 2 62,080,159 62,179,694 RGD:9068941
G TMEM107 transmembrane protein 107 JBrowse link 5 32,991,000 32,993,319 RGD:9068941
G TRAF3IP1 TRAF3 interacting protein 1 JBrowse link 25 48,782,448 48,836,993 RGD:9068941
nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 JBrowse link 1 31,522,911 31,525,342 RGD:13508589
RGD:9068941
G FOXH1 forkhead box H1 JBrowse link 13 37,883,554 37,887,324 RGD:9068941
G NODAL nodal growth differentiation factor JBrowse link 4 21,366,828 21,374,623 RGD:13508589
RGD:9068941
organ induction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FGF1 fibroblast growth factor 1 JBrowse link 2 37,467,431 37,554,770 RGD:13508589
RGD:9068941
G FGF10 fibroblast growth factor 10 JBrowse link 4 65,851,130 65,930,944 RGD:13508589
RGD:9068941
G FGF8 fibroblast growth factor 8 JBrowse link 28 14,362,407 14,367,109 RGD:9068941
G FGFR1 fibroblast growth factor receptor 1 JBrowse link 16 27,029,902 27,080,514 RGD:13508589
RGD:9068941
G FRS2 fibroblast growth factor receptor substrate 2 JBrowse link 10 11,445,843 11,552,325 RGD:13508589
RGD:9068941
G GDNF glial cell derived neurotrophic factor JBrowse link 4 70,966,694 70,991,860 RGD:13508589
RGD:9068941
G HOXA11 homeobox A11 JBrowse link 14 40,355,907 40,360,120 RGD:13508589
RGD:9068941
G HOXC11 homeobox C11 JBrowse link 27 1,287,326 1,289,577 RGD:13508589
RGD:9068941
G SIX1 SIX homeobox 1 JBrowse link 8 35,676,705 35,679,534 RGD:13508589
RGD:9068941
G SPRY1 sprouty RTK signaling antagonist 1 JBrowse link 19 16,969,869 16,976,573 RGD:9068941
P granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PLD6 phospholipase D family member 6 JBrowse link 5 42,208,594 42,212,403 RGD:9068941
RGD:13508589
G TDRD5 tudor domain containing 5 JBrowse link 7 20,259,940 20,348,014 RGD:13508589
RGD:9068941
pattern specification involved in metanephros development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G OSR1 odd-skipped related transcription factor 1 JBrowse link 17 14,508,543 14,515,657 RGD:13508589
RGD:9068941
polarity specification of anterior/posterior axis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SHH sonic hedgehog signaling molecule JBrowse link 16 18,650,553 18,663,571 RGD:13508589
RGD:9068941
G WNT8A Wnt family member 8A JBrowse link 11 25,707,058 25,752,724 RGD:9068941
polarity specification of proximal/distal axis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NODAL nodal growth differentiation factor JBrowse link 4 21,366,828 21,374,623 RGD:13508589
RGD:9068941
G WNT8A Wnt family member 8A JBrowse link 11 25,707,058 25,752,724 RGD:9068941
positive regulation of determination of dorsal identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACVR1 activin A receptor type 1 JBrowse link 36 3,743,257 3,818,659 RGD:9068941
G CTNNB1 catenin beta 1 JBrowse link 23 10,559,722 10,572,933 RGD:13508589
RGD:9068941
positive regulation of heart induction by negative regulation of canonical Wnt signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DKK1 dickkopf WNT signaling pathway inhibitor 1 JBrowse link 26 35,697,428 35,701,596 RGD:9068941
G MESP1 mesoderm posterior bHLH transcription factor 1 JBrowse link 3 52,738,333 52,739,962 RGD:9068941
positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NODAL nodal growth differentiation factor JBrowse link 4 21,366,828 21,374,623 RGD:9068941
G SMAD2 SMAD family member 2 JBrowse link 7 43,696,883 43,778,063 RGD:13508589
RGD:9068941
positive regulation of Notch signaling pathway involved in heart induction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA5 GATA binding protein 5 JBrowse link 24 46,417,404 46,427,617 RGD:13508589
RGD:9068941
G MESP1 mesoderm posterior bHLH transcription factor 1 JBrowse link 3 52,738,333 52,739,962 RGD:9068941
G ROBO1 roundabout guidance receptor 1 JBrowse link 31 8,082,363 8,594,623 RGD:9068941
G ROBO2 roundabout guidance receptor 2 JBrowse link 31 9,415,390 11,047,710 RGD:9068941
positive regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GORAB golgin, RAB6 interacting JBrowse link 7 28,220,679 28,241,035 RGD:9068941
posterior compartment specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PBX3 PBX homeobox 3 JBrowse link 9 57,198,531 57,429,820 RGD:9068941
primary heart field specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MEF2C myocyte enhancer factor 2C JBrowse link 3 19,778,997 19,948,203 RGD:13508589
RGD:9068941
primitive streak formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ETS2 ETS proto-oncogene 2, transcription factor JBrowse link 31 33,846,821 33,861,394 RGD:9068941
G FOXA2 forkhead box A2 JBrowse link 24 1,010,370 1,013,791 RGD:13508589
RGD:9068941
G GDF3 growth differentiation factor 3 JBrowse link 27 37,125,845 37,129,567 RGD:13508589
RGD:9068941
G LHX1 LIM homeobox 1 JBrowse link 9 36,760,890 36,768,345 RGD:13508589
RGD:9068941
G LRP6 LDL receptor related protein 6 JBrowse link 27 34,003,334 34,166,334 RGD:9068941
G OTX2 orthodenticle homeobox 2 JBrowse link 8 32,435,169 32,445,093 RGD:13508589
RGD:9068941
G SRF serum response factor JBrowse link 12 11,664,441 11,673,846 RGD:13508589
RGD:9068941
G TBXT T-box transcription factor T JBrowse link 1 54,183,495 54,192,331 RGD:9068941
G WNT5A Wnt family member 5A JBrowse link 20 34,756,430 34,790,937 RGD:13508589
RGD:9068941
pronephric field specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PAX2 paired box 2 JBrowse link 28 13,442,894 13,519,853 RGD:9068941
G PAX8 paired box 8 JBrowse link 17 37,307,130 37,331,729 RGD:13508589
RGD:9068941
proximal/distal axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SIX3 SIX homeobox 3 JBrowse link 10 47,332,875 47,369,359 RGD:9068941
proximal/distal pattern formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 JBrowse link 30 23,074,432 23,170,374 RGD:13508589
RGD:9068941
G CHSY1 chondroitin sulfate synthase 1 JBrowse link 3 39,844,227 39,916,484 RGD:13508589
RGD:9068941
G CTNNB1 catenin beta 1 JBrowse link 23 10,559,722 10,572,933 RGD:13508589
RGD:9068941
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 JBrowse link 17 50,633,397 50,653,882 RGD:13508589
RGD:9068941
G DLL1 delta like canonical Notch ligand 1 JBrowse link 12 72,265,078 72,272,347 RGD:13508589
RGD:9068941
G DLX1 distal-less homeobox 1 JBrowse link 36 16,485,158 16,489,397 RGD:9068941
G DLX2 distal-less homeobox 2 JBrowse link 36 16,499,009 16,502,365 RGD:13508589
RGD:9068941
G EN1 engrailed homeobox 1 JBrowse link 19 31,124,325 31,129,538 RGD:9068941
G GLI1 GLI family zinc finger 1 JBrowse link 10 1,565,306 1,575,971 RGD:13508589
RGD:9068941
G GLI2 GLI family zinc finger 2 JBrowse link 19 29,128,401 29,383,324 RGD:9068941
G GLI3 GLI family zinc finger 3 JBrowse link 18 7,800,817 8,071,531 RGD:13508589
RGD:9068941
G GREM1 gremlin 1, DAN family BMP antagonist JBrowse link 30 2,219,535 2,231,868 RGD:13508589
RGD:9068941
G HOXA10 homeobox A10 JBrowse link 14 40,346,462 40,348,900 RGD:9068941
G HOXA11 homeobox A11 JBrowse link 14 40,355,907 40,360,120 RGD:13508589
RGD:9068941
G HOXA9 homeobox A9 JBrowse link 14 40,336,829 40,340,533 RGD:13508589
RGD:9068941
G HOXC10 homeobox C10 JBrowse link 27 1,272,272 1,277,411 RGD:13508589
RGD:9068941
G HOXC11 homeobox C11 JBrowse link 27 1,287,326 1,289,577 RGD:13508589
RGD:9068941
G HOXD10 homeobox D10 JBrowse link 36 19,924,352 19,927,706 RGD:13508589
RGD:9068941
G HOXD9 homeobox D9 JBrowse link 36 19,929,479 19,932,861 RGD:9068941
G LRP4 LDL receptor related protein 4 JBrowse link 18 42,616,683 42,667,297 RGD:13508589
RGD:9068941
G PBX1 PBX homeobox 1 JBrowse link 38 18,378,997 18,703,694 RGD:9068941
G PBX2 PBX homeobox 2 JBrowse link 12 1,577,639 1,582,609 RGD:9068941
G TP63 tumor protein p63 JBrowse link 34 21,766,861 21,985,095 RGD:9068941
proximal/distal pattern formation involved in metanephric nephron development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IRX1 iroquois homeobox 1 JBrowse link 34 9,537,231 9,544,029 RGD:9068941
G IRX2 iroquois homeobox 2 JBrowse link 34 10,228,067 10,233,214 RGD:13508589
RGD:9068941
radial pattern formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NR2F2 nuclear receptor subfamily 2 group F member 2 JBrowse link 3 44,135,143 44,148,836 RGD:9068941
regulation of adaxial/abaxial pattern formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMI1 BMI1 proto-oncogene, polycomb ring finger JBrowse link 2 10,818,232 10,828,473 RGD:13508589
G EED embryonic ectoderm development JBrowse link 21 13,260,062 13,289,511 RGD:13508589
RGD:9068941
regulation of cell motility involved in somitogenic axis elongation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NKD1 NKD inhibitor of WNT signaling pathway 1 JBrowse link 2 64,720,059 64,806,868 RGD:9068941
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha JBrowse link 23 32,441,130 32,628,588 RGD:9068941
regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NOG noggin JBrowse link 9 31,453,604 31,456,060 RGD:9068941
regulation of heart induction by regulation of canonical Wnt signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G POU5F1 POU class 5 homeobox 1 JBrowse link 12 860,702 866,099 RGD:9068941
regulation of heart looping term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RNF207 ring finger protein 207 JBrowse link 5 60,105,200 60,119,902 RGD:9068941
regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SHH sonic hedgehog signaling molecule JBrowse link 16 18,650,553 18,663,571 RGD:9068941
regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MKS1 MKS transition zone complex subunit 1 JBrowse link 9 32,865,972 32,878,712 RGD:13508589
RGD:9068941
regulation of somitogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDX1 caudal type homeobox 1 JBrowse link 4 58,897,914 58,915,573 RGD:13508589
RGD:9068941
G CDX2 caudal type homeobox 2 JBrowse link 25 11,701,134 11,707,883 RGD:13508589
RGD:9068941
G DLL1 delta like canonical Notch ligand 1 JBrowse link 12 72,265,078 72,272,347 RGD:13508589
RGD:9068941
G DMRT2 doublesex and mab-3 related transcription factor 2 JBrowse link 1 89,873,380 89,880,944 RGD:9068941
G HES7 hes family bHLH transcription factor 7 JBrowse link 5 32,944,351 32,950,433 RGD:9068941
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase JBrowse link 6 14,631,638 14,640,147 RGD:9068941
G NOTCH1 notch receptor 1 JBrowse link 9 48,975,972 49,018,985 RGD:9068941
regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EVX1 even-skipped homeobox 1 JBrowse link 14 40,416,167 40,422,412 RGD:9068941
G NKX6-1 NK6 homeobox 1 JBrowse link 32 8,256,513 8,263,238 RGD:9068941
G NKX6-2 NK6 homeobox 2 JBrowse link 28 40,568,948 40,570,240 RGD:9068941
regulation of transcription involved in anterior/posterior axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DDIT3 DNA damage inducible transcript 3 JBrowse link 10 1,606,693 1,612,410 RGD:13508589
RGD:9068941
G WNT8A Wnt family member 8A JBrowse link 11 25,707,058 25,752,724 RGD:9068941
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 JBrowse link 30 23,074,432 23,170,374 RGD:13508589
RGD:9068941
rostrocaudal neural tube patterning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP6AP2 ATPase H+ transporting accessory protein 2 JBrowse link X 35,050,588 35,073,633 RGD:9068941
G BMI1 BMI1 proto-oncogene, polycomb ring finger JBrowse link 2 10,818,232 10,828,473 RGD:13508589
G SOX17 SRY-box 17 JBrowse link 29 5,979,092 5,981,504 RGD:9068941
secondary heart field specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AXIN2 axin 2 JBrowse link 9 14,559,476 14,588,950 RGD:13508589
RGD:9068941
G BMP4 bone morphogenetic protein 4 JBrowse link 8 29,997,563 30,254,307 RGD:13508589
RGD:9068941
G FOXH1 forkhead box H1 JBrowse link 13 37,883,554 37,887,324 RGD:9068941
G ISL1 ISL LIM homeobox 1 JBrowse link 4 63,638,009 63,648,492 RGD:9068941
G LRP2 LDL receptor related protein 2 JBrowse link 36 13,910,450 14,107,081 RGD:9068941
G MEF2C myocyte enhancer factor 2C JBrowse link 3 19,778,997 19,948,203 RGD:13508589
RGD:9068941
G MESP1 mesoderm posterior bHLH transcription factor 1 JBrowse link 3 52,738,333 52,739,962 RGD:9068941
G RBPJ recombination signal binding protein for immunoglobulin kappa J region JBrowse link 3 84,060,417 84,286,008 RGD:13508589
RGD:9068941
G SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 JBrowse link 16 15,279,295 15,311,210 RGD:13508589
RGD:9068941
segment specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMI1 BMI1 proto-oncogene, polycomb ring finger JBrowse link 2 10,818,232 10,828,473 RGD:9068941
G DVL2 dishevelled segment polarity protein 2 JBrowse link 5 32,194,326 32,201,922 RGD:13508589
RGD:9068941
G HOXA2 homeobox A2 JBrowse link 14 40,273,992 40,276,975 RGD:13508589
RGD:9068941
G MAFB MAF bZIP transcription factor B JBrowse link 24 28,769,904 28,772,519 RGD:9068941
G MLLT3 MLLT3, super elongation complex subunit JBrowse link 11 39,923,165 40,203,574 RGD:13508589
RGD:9068941
G MSGN1 mesogenin 1 JBrowse link 17 13,266,674 13,267,968 RGD:13508589
RGD:9068941
G MTF2 metal response element binding transcription factor 2 JBrowse link 6 55,950,814 56,010,935 RGD:9068941
segmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACD ACD shelterin complex subunit and telomerase recruitment factor JBrowse link 5 81,789,915 81,792,725 RGD:9068941
sensory organ boundary specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NTF4 neurotrophin 4 JBrowse link 1 107,371,335 107,377,238 RGD:13508589
RGD:9068941
smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GLI2 GLI family zinc finger 2 JBrowse link 19 29,128,401 29,383,324 RGD:9068941
G GLI3 GLI family zinc finger 3 JBrowse link 18 7,800,817 8,071,531 RGD:13508589
RGD:9068941
G IFT122 intraflagellar transport 122 JBrowse link 20 5,644,002 5,716,702 RGD:9068941
G PTCH1 patched 1 JBrowse link 1 71,246,750 71,309,036 RGD:9068941
G TBC1D32 TBC1 domain family member 32 JBrowse link 1 60,662,704 60,873,881 RGD:9068941
G TULP3 tubby like protein 3 JBrowse link 27 41,819,574 41,884,198 RGD:13508589
RGD:9068941
G WDR19 WD repeat domain 19 JBrowse link 3 73,115,560 73,213,823 RGD:9068941
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GLI2 GLI family zinc finger 2 JBrowse link 19 29,128,401 29,383,324 RGD:9068941
G GLI3 GLI family zinc finger 3 JBrowse link 18 7,800,817 8,071,531 RGD:13508589
RGD:9068941
G SUFU SUFU negative regulator of hedgehog signaling JBrowse link 28 14,992,989 15,115,499 RGD:13508589
RGD:9068941
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GLI2 GLI family zinc finger 2 JBrowse link 19 29,128,401 29,383,324 RGD:9068941
G GLI3 GLI family zinc finger 3 JBrowse link 18 7,800,817 8,071,531 RGD:13508589
RGD:9068941
G SUFU SUFU negative regulator of hedgehog signaling JBrowse link 28 14,992,989 15,115,499 RGD:13508589
RGD:9068941
smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMO smoothened, frizzled class receptor JBrowse link 14 7,518,871 7,527,703 RGD:13508589
RGD:9068941
somite rostral/caudal axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 JBrowse link 19 29,916,994 30,063,243 RGD:13508589
RGD:9068941
G GDF3 growth differentiation factor 3 JBrowse link 27 37,125,845 37,129,567 RGD:13508589
RGD:9068941
G KDM6A lysine demethylase 6A JBrowse link X 38,745,854 38,964,029 RGD:13508589
RGD:9068941
G LHX1 LIM homeobox 1 JBrowse link 9 36,760,890 36,768,345 RGD:13508589
RGD:9068941
G NRARP NOTCH regulated ankyrin repeat protein JBrowse link 9 48,394,568 48,396,849 RGD:13508589
RGD:9068941
G RIPPLY1 ripply transcriptional repressor 1 JBrowse link X 80,457,529 80,461,281 RGD:9068941
G RIPPLY2 ripply transcriptional repressor 2 JBrowse link 12 44,144,821 44,168,236 RGD:9068941
G SMAD4 SMAD family member 4 JBrowse link 1 23,875,989 23,930,027 RGD:9068941
G TBX6 T-box 6 JBrowse link 6 18,093,201 18,098,592 RGD:9068941
G TMED2 transmembrane p24 trafficking protein 2 JBrowse link 26 6,039,046 6,047,490 RGD:9068941
RGD:13508589
somite specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G COBL cordon-bleu WH2 repeat protein JBrowse link 18 2,206,957 2,386,333 RGD:9068941
G DLL1 delta like canonical Notch ligand 1 JBrowse link 12 72,265,078 72,272,347 RGD:13508589
RGD:9068941
G MEOX1 mesenchyme homeobox 1 JBrowse link 9 19,614,568 19,641,426 RGD:9068941
G MEOX2 mesenchyme homeobox 2 JBrowse link 14 30,258,737 30,324,438 RGD:9068941
G RIPPLY1 ripply transcriptional repressor 1 JBrowse link X 80,457,529 80,461,281 RGD:9068941
somitogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABI1 abl interactor 1 JBrowse link 2 6,941,752 7,059,466 RGD:9068941
G AXIN2 axin 2 JBrowse link 9 14,559,476 14,588,950 RGD:13508589
RGD:9068941
G BHLHE40 basic helix-loop-helix family member e40 JBrowse link 20 12,641,872 12,647,519 RGD:9068941
G BHLHE41 basic helix-loop-helix family member e41 JBrowse link 27 21,464,302 21,469,119 RGD:9068941
G BMPR1A bone morphogenetic protein receptor type 1A JBrowse link 4 34,499,898 34,582,481 RGD:13508589
RGD:9068941
G CRB2 crumbs cell polarity complex component 2 JBrowse link 9 59,427,661 59,450,436 RGD:9068941
G DLL1 delta like canonical Notch ligand 1 JBrowse link 12 72,265,078 72,272,347 RGD:9068941
G DLL3 delta like canonical Notch ligand 3 JBrowse link 1 113,737,662 113,745,936 RGD:9068941
G FOXB1 forkhead box B1 JBrowse link 30 24,822,137 24,825,833 RGD:13508589
RGD:9068941
G FOXC2 forkhead box C2 JBrowse link 5 66,234,336 66,296,007 RGD:13508589
G FOXF1 forkhead box F1 JBrowse link 5 66,343,776 66,347,785 RGD:9068941
G HES2 hes family bHLH transcription factor 2 JBrowse link 5 60,275,645 60,279,327 RGD:9068941
G HES3 hes family bHLH transcription factor 3 JBrowse link 5 60,134,351 60,136,924 RGD:9068941
G HES4 hes family bHLH transcription factor 4 JBrowse link 5 56,221,509 56,226,938 RGD:9068941
G HES5 hes family bHLH transcription factor 5 JBrowse link 5 57,387,961 57,389,412 RGD:9068941
G HES6 hes family bHLH transcription factor 6 JBrowse link 25 48,710,694 48,713,392 RGD:9068941
G HES7 hes family bHLH transcription factor 7 JBrowse link 5 32,944,351 32,950,433 RGD:9068941
G KAT2A lysine acetyltransferase 2A JBrowse link 9 20,778,434 20,787,057 RGD:9068941
G LEF1 lymphoid enhancer binding factor 1 JBrowse link 32 28,516,002 28,633,759 RGD:9068941
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase JBrowse link 6 14,631,638 14,640,147 RGD:9068941
G LOC485469 protocadherin-8 JBrowse link 22 9,860,590 9,865,298 RGD:9068941
G MESP1 mesoderm posterior bHLH transcription factor 1 JBrowse link 3 52,738,333 52,739,962 RGD:9068941
G MESP2 mesoderm posterior bHLH transcription factor 2 JBrowse link 3 52,757,581 52,759,987 RGD:9068941
G MIB1 mindbomb E3 ubiquitin protein ligase 1 JBrowse link 7 66,173,414 66,289,477 RGD:9068941
G MSGN1 mesogenin 1 JBrowse link 17 13,266,674 13,267,968 RGD:9068941
G MYF5 myogenic factor 5 JBrowse link 15 23,049,235 23,051,604 RGD:13508589
RGD:9068941
G MYF6 myogenic factor 6 JBrowse link 15 23,039,090 23,041,092 RGD:9068941
G NKX3-1 NK3 homeobox 1 JBrowse link 25 33,815,343 33,817,465 RGD:9068941
G NLE1 notchless homolog 1 JBrowse link 9 38,222,083 38,230,819 RGD:9068941
G PALB2 partner and localizer of BRCA2 JBrowse link 6 22,209,711 22,237,798 RGD:9068941
G PAX1 paired box 1 JBrowse link 24 1,742,570 1,752,593 RGD:9068941
G PLXNA2 plexin A2 JBrowse link 7 6,863,518 7,049,301 RGD:9068941
G POFUT1 protein O-fucosyltransferase 1 JBrowse link 24 21,608,905 21,636,084 RGD:9068941
G POGLUT1 protein O-glucosyltransferase 1 JBrowse link 33 23,122,682 23,150,863 RGD:9068941
G PRKDC protein kinase, DNA-activated, catalytic subunit JBrowse link 29 24,904 243,926 RGD:9068941
G PSEN1 presenilin 1 JBrowse link 8 46,495,551 46,569,532 RGD:13508589
RGD:9068941
G RBPJ recombination signal binding protein for immunoglobulin kappa J region JBrowse link 3 84,060,417 84,286,008 RGD:13508589
RGD:9068941
G RIPPLY2 ripply transcriptional repressor 2 JBrowse link 12 44,144,821 44,168,236 RGD:9068941
G ROR2 receptor tyrosine kinase like orphan receptor 2 JBrowse link 1 95,209,122 95,280,956 RGD:9068941
G SEMA3C semaphorin 3C JBrowse link 18 20,457,683 20,748,008 RGD:13508589
RGD:9068941
G SMAD3 SMAD family member 3 JBrowse link 30 31,246,313 31,360,098 RGD:13508589
RGD:9068941
G TBXT T-box transcription factor T JBrowse link 1 54,183,495 54,192,331 RGD:13508589
RGD:9068941
G TCAP titin-cap JBrowse link 9 22,811,792 22,812,980 RGD:13508589
RGD:9068941
G TCF15 transcription factor 15 JBrowse link 24 20,274,113 20,281,081 RGD:13508589
RGD:9068941
G WNT5A Wnt family member 5A JBrowse link 20 34,756,430 34,790,937 RGD:13508589
RGD:9068941
G XRCC2 X-ray repair cross complementing 2 JBrowse link 16 16,402,821 16,429,095 RGD:13508589
RGD:9068941
G ZC3H7B zinc finger CCCH-type containing 7B JBrowse link 10 23,882,379 23,944,850 RGD:9068941
G ZEB2 zinc finger E-box binding homeobox 2 JBrowse link 19 46,419,812 46,541,888 RGD:9068941
specification of animal organ identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TBR1 T-box, brain 1 JBrowse link 36 6,989,644 6,997,916 RGD:13508589
RGD:9068941
specification of animal organ position term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 8 29,997,563 30,254,307 RGD:13508589
RGD:9068941
G HOXA3 homeobox A3 JBrowse link 14 40,280,866 40,326,559 RGD:13508589
RGD:9068941
G TBX3 T-box 3 JBrowse link 26 11,694,885 11,709,594 RGD:9068941
specification of anterior mesonephric tubule identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G OSR1 odd-skipped related transcription factor 1 JBrowse link 17 14,508,543 14,515,657 RGD:13508589
RGD:9068941
specification of axis polarity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHI1 Abelson helper integration site 1 JBrowse link 1 27,966,101 28,199,163 RGD:13508589
RGD:9068941
G BCOR BCL6 corepressor JBrowse link X 34,621,314 34,735,502 RGD:9068941
specification of loop of Henle identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HES5 hes family bHLH transcription factor 5 JBrowse link 5 57,387,961 57,389,412 RGD:13508589
RGD:9068941
G IRX1 iroquois homeobox 1 JBrowse link 34 9,537,231 9,544,029 RGD:9068941
G IRX2 iroquois homeobox 2 JBrowse link 34 10,228,067 10,233,214 RGD:13508589
RGD:9068941
G IRX3 iroquois homeobox 3 JBrowse link 2 61,555,608 61,559,185 RGD:13508589
RGD:9068941
specification of posterior mesonephric tubule identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G OSR1 odd-skipped related transcription factor 1 JBrowse link 17 14,508,543 14,515,657 RGD:13508589
RGD:9068941
specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 8 29,997,563 30,254,307 RGD:13508589
RGD:9068941
spinal cord anterior/posterior patterning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GDF11 growth differentiation factor 11 JBrowse link 10 142,039 152,537 RGD:9068941
spinal cord dorsal/ventral patterning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GLI2 GLI family zinc finger 2 JBrowse link 19 29,128,401 29,383,324 RGD:9068941
G INTU inturned planar cell polarity protein JBrowse link 19 13,193,252 13,276,593 RGD:13508589
RGD:9068941
G SHH sonic hedgehog signaling molecule JBrowse link 16 18,650,553 18,663,571 RGD:13508589
RGD:9068941
spinal cord patterning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RELN reelin JBrowse link 18 16,275,822 16,773,875 RGD:13508589
RGD:9068941
telencephalon regionalization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP2 bone morphogenetic protein 2 JBrowse link 24 15,199,667 15,211,509 RGD:13508589
RGD:9068941
G BMP4 bone morphogenetic protein 4 JBrowse link 8 29,997,563 30,254,307 RGD:13508589
RGD:9068941
G GSX2 GS homeobox 2 JBrowse link 13 46,640,172 46,642,405 RGD:9068941
G LHX2 LIM homeobox 2 JBrowse link 9 58,825,505 58,859,311 RGD:13508589
RGD:9068941
G SHH sonic hedgehog signaling molecule JBrowse link 16 18,650,553 18,663,571 RGD:13508589
RGD:9068941
G SIX3 SIX homeobox 3 JBrowse link 10 47,332,875 47,369,359 RGD:9068941
thorax and anterior abdomen determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BASP1 brain abundant membrane attached signal protein 1 JBrowse link 4 86,360,641 86,417,408 RGD:9068941
G NEUROG1 neurogenin 1 JBrowse link 11 23,563,128 23,564,819 RGD:13508589
RGD:9068941
G TIFAB TIFA inhibitor JBrowse link 11 23,492,317 23,495,825 RGD:13508589
RGD:9068941
G WT1 Wilms tumor 1 JBrowse link 18 35,099,660 35,148,767 RGD:9068941
transforming growth factor beta receptor signaling pathway involved in primitive streak formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NODAL nodal growth differentiation factor JBrowse link 4 21,366,828 21,374,623 RGD:13508589
RGD:9068941
ventral midline determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMO smoothened, frizzled class receptor JBrowse link 14 7,518,871 7,527,703 RGD:13508589
RGD:9068941
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ASCL1 achaete-scute family bHLH transcription factor 1 JBrowse link 15 41,694,021 41,696,933 RGD:13508589
RGD:9068941
G DLL4 delta like canonical Notch ligand 4 JBrowse link 30 8,059,463 8,068,742 RGD:9068941
G FOXN4 forkhead box N4 JBrowse link 26 17,730,638 17,757,173 RGD:9068941
ventral spinal cord interneuron fate determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NKX2-2 NK2 homeobox 2 JBrowse link 24 1,933,176 1,935,875 RGD:13508589
RGD:9068941
ventral spinal cord interneuron specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DBX1 developing brain homeobox 1 JBrowse link 21 42,207,205 42,214,954 RGD:9068941
G DMRT3 doublesex and mab-3 related transcription factor 3 JBrowse link 1 89,798,215 89,813,140 RGD:9068941
G LHX3 LIM homeobox 3 JBrowse link 9 49,248,555 49,254,128 RGD:9068941
G SOX1 SRY-box 1 JBrowse link 22 59,902,113 59,903,820 RGD:9068941
ventral trunk neural crest cell migration term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NRP1 neuropilin 1 JBrowse link 2 3,416,062 3,553,929 RGD:13508589
RGD:9068941
G NRP2 neuropilin 2 JBrowse link 37 14,293,545 14,408,984 RGD:13508589
RGD:9068941
G SEMA3A semaphorin 3A JBrowse link 18 23,411,607 23,866,631 RGD:13508589
RGD:9068941
G SEMA3F semaphorin 3F JBrowse link 20 39,135,580 39,165,381 RGD:9068941
vertebrate eye-specific patterning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C1QA complement C1q A chain JBrowse link 2 76,668,086 76,671,082 RGD:9068941
G C3 complement C3 JBrowse link 20 53,566,226 53,598,365 RGD:9068941
G ITGAM integrin subunit alpha M JBrowse link 6 16,944,062 16,996,525 RGD:9068941
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DKK1 dickkopf WNT signaling pathway inhibitor 1 JBrowse link 26 35,697,428 35,701,596 RGD:9068941
G LRP6 LDL receptor related protein 6 JBrowse link 27 34,003,334 34,166,334 RGD:9068941
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha JBrowse link 23 32,441,130 32,628,588 RGD:9068941
G SFRP1 secreted frizzled related protein 1 JBrowse link 16 24,262,451 24,306,162 RGD:9068941
G SFRP2 secreted frizzled related protein 2 JBrowse link 15 51,541,197 51,548,765 RGD:9068941
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PCSK6 proprotein convertase subtilisin/kexin type 6 JBrowse link 3 39,582,804 39,768,838 RGD:13508589
RGD:9068941
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CXXC4 CXXC finger protein 4 JBrowse link 32 25,469,736 25,492,226 RGD:9068941
G SMAD2 SMAD family member 2 JBrowse link 7 43,696,883 43,778,063 RGD:13508589
RGD:9068941
G SMAD6 SMAD family member 6 JBrowse link 30 30,938,908 31,014,259 RGD:13508589
RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15713
    multicellular organismal process 7113
      pattern specification process 427
        axis specification + 82
        cell fate commitment involved in pattern specification + 14
        embryonic pattern specification + 60
        head segmentation + 0
        imaginal disc lineage restriction + 0
        internode patterning 0
        intracellular mRNA localization involved in pattern specification process + 0
        lung pattern specification process + 1
        maintenance of left/right asymmetry + 0
        neural plate pattern specification + 8
        ommatidial rotation 0
        pattern specification involved in kidney development + 8
        regionalization + 333
        regulation of R8 cell spacing in compound eye + 0
        renal system pattern specification + 8
        segment specification + 17
        specification of axis polarity + 5
        specification of symmetry + 123
Path 2
Term Annotations click to browse term
  biological_process 15713
    developmental process 5898
      anatomical structure development 5538
        multicellular organism development 5089
          pattern specification process 427
            axis specification + 82
            cell fate commitment involved in pattern specification + 14
            embryonic pattern specification + 60
            head segmentation + 0
            imaginal disc lineage restriction + 0
            internode patterning 0
            intracellular mRNA localization involved in pattern specification process + 0
            lung pattern specification process + 1
            maintenance of left/right asymmetry + 0
            neural plate pattern specification + 8
            ommatidial rotation 0
            pattern specification involved in kidney development + 8
            regionalization + 333
            regulation of R8 cell spacing in compound eye + 0
            renal system pattern specification + 8
            segment specification + 17
            specification of axis polarity + 5
            specification of symmetry + 123
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.