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ONTOLOGY REPORT - ANNOTATIONS


Term:ectoderm development
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Accession:GO:0007398 term browser browse the term
Definition:The process whose specific outcome is the progression of the ectoderm over time, from its formation to the mature structure. In animal embryos, the ectoderm is the outer germ layer of the embryo, formed during gastrulation.


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ectoderm development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:2158342 (MGI:3051919|PMID:15136139) RGD PMID:15136139 MGI:3051919 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Ctnnb1 catenin beta 1 IEA
ISO
GO_REF:0000107
MGI:1857678 (MGI:77405|PMID:8582267)
Ensembl
RGD
PMID:8582267 GO_REF:0000107, MGI:77405 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Elf5 E74 like ETS transcription factor 5 ISO MGI:3578666 (MGI:3578082|PMID:15829518) RGD PMID:15829518 MGI:3578082 NCBI chr 3:93,333,514...93,374,454
Ensembl chr 3:93,351,619...93,371,656
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:3822451 (MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:3821807 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
JBrowse link
G Grhl3 grainyhead-like transcription factor 3 ISO MGI:2684328 (MGI:2682079|PMID:14608380) RGD PMID:14608380 MGI:2682079 NCBI chr 5:153,893,039...153,925,045
Ensembl chr 5:153,893,039...153,924,896
JBrowse link
G L3mbtl2 L3MBTL histone methyl-lysine binding protein 2 ISO MGI:5810650 (MGI:5700289|PMID:22770845) RGD PMID:22770845 MGI:5700289 NCBI chr 7:122,896,860...122,918,025
Ensembl chr 7:122,896,871...122,918,036
JBrowse link
G Nf2 neurofibromin 2 IEA
ISO
GO_REF:0000107
MGI:1857941 (MGI:707944|PMID:9171370)
Ensembl
RGD
PMID:9171370 GO_REF:0000107, MGI:707944 NCBI chr14:84,996,905...85,088,547
Ensembl chr14:84,996,905...85,088,523
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
GO_REF:0000107
MGI:1857796 (MGI:1928592|PMID:11118883)
Ensembl
RGD
PMID:11118883 GO_REF:0000107, MGI:1928592 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Zbtb17 zinc finger and BTB domain containing 17 ISO MGI:2679766 (MGI:2679173|PMID:14560010) RGD PMID:14560010 MGI:2679173 NCBI chr 5:159,993,799...160,014,899
Ensembl chr 5:159,993,799...160,014,895
JBrowse link
ectoderm formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 ISO MGI:99783 (MGI:1344734|PMID:10498685) RGD PMID:10498685 MGI:1344734 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Lhx1 LIM homeobox 1 ISS
ISO
GO_REF:0000024
MGI:1347476 (MGI:1344734|PMID:10498685)
UniProt
RGD
PMID:10498685 GO_REF:0000024, MGI:1344734 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
ectodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Erf Ets2 repressor factor ISO MGI:3719472 (MGI:3718929|PMID:17502352) RGD PMID:17502352 MGI:3718929 NCBI chr 1:82,112,449...82,120,902
Ensembl chr 1:82,112,449...82,120,902
JBrowse link
G Itga6 integrin subunit alpha 6 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 3:58,442,904...58,515,124
Ensembl chr 3:58,443,101...58,515,124
JBrowse link
G Itgam integrin subunit alpha M ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 1:199,495,312...199,545,738
Ensembl chr 1:199,495,298...199,623,960
JBrowse link
G Vps52 VPS52 subunit of GARP complex ISO (MGI:5449815|PMID:23142660) RGD PMID:23142660 MGI:5449815 NCBI chr20:5,431,997...5,441,736
Ensembl chr20:5,432,004...5,441,706
JBrowse link
ectodermal cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elf5 E74 like ETS transcription factor 5 ISO MGI:95456 (MGI:5616945|PMID:25446535) RGD PMID:25446535 MGI:5616945 NCBI chr 3:93,333,514...93,374,454
Ensembl chr 3:93,351,619...93,371,656
JBrowse link
G Ets2 ETS proto-oncogene 2, transcription factor ISO MGI:1335079 (MGI:5616945|PMID:25446535) RGD PMID:25446535 MGI:5616945 NCBI chr11:36,075,709...36,092,495
Ensembl chr11:36,075,709...36,092,495
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO (MGI:1355046|PMID:10742100) RGD PMID:10742100 MGI:1355046 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
negative regulation of ectoderm development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sall1 spalt-like transcription factor 1 ISO (MGI:4946171|PMID:21062744) RGD PMID:21062744 MGI:4946171 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039
JBrowse link
G Tpt1 tumor protein, translationally-controlled 1 ISO (MGI:4946164|PMID:21076177) RGD PMID:21076177 MGI:4946164 NCBI chr15:57,891,680...57,894,504
Ensembl chr15:57,891,680...57,894,504
JBrowse link
negative regulation of ectodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzd7 frizzled class receptor 7 ISO (PMID:18681827) RGD PMID:18681827 NCBI chr 9:66,305,731...66,308,550
Ensembl chr 9:66,305,731...66,308,550
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        tissue development 2099
          ectoderm development 20
            ectoderm formation + 6
            ectodermal cell differentiation + 8
            mesectoderm development 0
            negative regulation of ectoderm development 2
            positive regulation of ectoderm development 0
            regulation of ectoderm development + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.