ONTOLOGY REPORT - ANNOTATIONS


Term:synapse assembly
go back to main search page
Accession:GO:0007416 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a set of components to form a synapse. This process ends when the synapse is mature (functional).
Synonyms:exact_synonym: synapse biogenesis;   synaptogenesis
 xref: Wikipedia:Synaptogenesis


show annotations for term's descendants       view all columns           Sort by:
 
synapse assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ache acetylcholinesterase JBrowse link 12 22,472,358 22,477,052 RGD:1299197
G Add2 adducin 2 JBrowse link 4 117,691,294 117,887,556 RGD:1600115
RGD:1624291
G Adgrf1 adhesion G protein-coupled receptor F1 JBrowse link 9 20,343,730 20,378,686 RGD:1624291
G Adgrl3 adhesion G protein-coupled receptor L3 JBrowse link 14 28,362,176 29,226,085 RGD:1600115
RGD:13792537
RGD:1624291
G Agrn agrin JBrowse link 5 173,589,910 173,622,813 RGD:1578367
G Bdnf brain-derived neurotrophic factor JBrowse link 3 100,768,637 100,819,216 RGD:1624291
RGD:1600115
G Bsn bassoon (presynaptic cytomatrix protein) JBrowse link 8 116,873,721 116,965,396 RGD:1600115
G Cacna1a calcium voltage-gated channel subunit alpha1 A JBrowse link 19 25,453,236 25,749,550 RGD:1600115
RGD:1624291
G Cadm1 cell adhesion molecule 1 JBrowse link 8 51,858,906 52,200,591 RGD:1624291
G Cdh1 cadherin 1 JBrowse link 19 38,768,467 38,838,395 RGD:632466
RGD:13792537
G Cdh2 cadherin 2 JBrowse link 18 8,146,971 8,366,037 RGD:632477
RGD:13792537
G Cdh9 cadherin 9 JBrowse link 2 66,938,796 67,078,897 RGD:13432233
RGD:1624291
G Cdk5 cyclin-dependent kinase 5 JBrowse link 4 7,282,945 7,287,427 RGD:1624291
RGD:1600115
G Clstn3 calsyntenin 3 JBrowse link 4 157,044,736 157,078,013 RGD:1624291
RGD:1600115
G Crkl CRK like proto-oncogene, adaptor protein JBrowse link 11 87,338,606 87,356,644 RGD:1600115
RGD:1624291
G Dbnl drebrin-like JBrowse link 14 86,029,335 86,044,364 RGD:1624291
RGD:1600115
G Dnm3 dynamin 3 JBrowse link 13 79,906,711 80,379,967 RGD:8554738
G Drd1 dopamine receptor D1 JBrowse link 17 11,099,736 11,104,352 RGD:8554073
G Drd2 dopamine receptor D2 JBrowse link 8 53,678,777 53,743,643 RGD:8554073
G Dscam DS cell adhesion molecule JBrowse link 11 37,004,776 37,599,866 RGD:1600115
G Erbb4 erb-b2 receptor tyrosine kinase 4 JBrowse link 9 75,021,790 76,178,936 RGD:1600115
RGD:1624291
G Erc2 ELKS/RAB6-interacting/CAST family member 2 JBrowse link 16 3,258,580 4,283,592 RGD:1299401
G Farp1 FERM, ARH/RhoGEF and pleckstrin domain protein 1 JBrowse link 15 106,375,298 106,625,837 RGD:8554251
G Flrt3 fibronectin leucine rich transmembrane protein 3 JBrowse link 3 134,684,446 134,696,586 RGD:1600115
RGD:1624291
G Gja10 gap junction protein, alpha 10 JBrowse link 5 47,819,484 47,841,138 RGD:1624291
RGD:1600115
G Glra2 glycine receptor, alpha 2 JBrowse link X 30,612,894 30,832,078 RGD:728718
G Gnpat glyceronephosphate O-acyltransferase JBrowse link 19 57,614,813 57,640,524 RGD:1624291
RGD:1600115
G Gphn gephyrin JBrowse link 6 101,327,874 101,859,169 RGD:1599855
G Gpm6a glycoprotein m6a JBrowse link 16 39,367,697 39,719,292 RGD:8554345
G Kirrel3 kirre like nephrin family adhesion molecule 3 JBrowse link 8 35,692,525 36,254,755 RGD:1624291
RGD:1600115
G LOC100911248 crk-like protein-like JBrowse link 11 87,778,338 87,815,049 RGD:1600115
G Map1b microtubule-associated protein 1B JBrowse link 2 29,675,391 29,768,750 RGD:2304009
G Mapt microtubule-associated protein tau JBrowse link 10 92,289,002 92,386,517 RGD:1624291
G Mecp2 methyl CpG binding protein 2 JBrowse link X 156,650,389 156,713,813 RGD:1600115
RGD:1624291
G Myo6 myosin VI JBrowse link 8 87,583,649 87,731,271 RGD:1624291
G Nlgn1 neuroligin 1 JBrowse link 2 111,057,291 111,973,681 RGD:8554205
RGD:1600115
RGD:1624291
G Nlgn2 neuroligin 2 JBrowse link 10 56,431,586 56,444,847 RGD:8554205
G Nlgn3 neuroligin 3 JBrowse link X 71,199,390 71,227,460 RGD:8554205
G Nrg1 neuregulin 1 JBrowse link 16 62,969,573 64,065,063 RGD:1600115
RGD:1624291
G Nrxn1 neurexin 1 JBrowse link 6 13,886,757 15,191,660 RGD:1624291
RGD:1600115
G Nrxn2 neurexin 2 JBrowse link 1 221,792,191 221,908,047 RGD:1624291
RGD:1600115
G Nrxn3 neurexin 3 JBrowse link 6 112,133,204 114,069,589 RGD:1624291
G Pclo piccolo (presynaptic cytomatrix protein) JBrowse link 4 16,454,904 17,058,921 RGD:1600115
G Pdgfb platelet derived growth factor subunit B JBrowse link 7 121,215,458 121,233,092 RGD:1624291
G Plxnd1 plexin D1 JBrowse link 4 147,854,309 147,894,170 RGD:1624291
RGD:1600115
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:1624291
G Rab29 RAB29, member RAS oncogene family JBrowse link 13 48,644,575 48,650,229 RGD:1624291
RGD:1600115
G Sdk2 sidekick cell adhesion molecule 2 JBrowse link 10 102,299,593 102,576,554 RGD:1624291
RGD:13792537
G Shank1 SH3 and multiple ankyrin repeat domains 1 JBrowse link 1 100,297,137 100,344,377 RGD:13792537
G Shank2 SH3 and multiple ankyrin repeat domains 2 JBrowse link 1 217,149,156 217,593,950 RGD:1624291
RGD:13792537
RGD:1600115
G Shank3 SH3 and multiple ankyrin repeat domains 3 JBrowse link 7 130,474,278 130,534,679 RGD:1624291
RGD:13792537
RGD:1600115
G Slitrk1 SLIT and NTRK-like family, member 1 JBrowse link 15 93,303,382 93,307,420 RGD:1624291
RGD:1600115
G Slitrk6 SLIT and NTRK-like family, member 6 JBrowse link 15 95,507,632 95,514,259 RGD:1624291
RGD:1600115
G Sptbn2 spectrin, beta, non-erythrocytic 2 JBrowse link 1 219,964,429 220,006,811 RGD:1624291
RGD:1600115
G Vps35 VPS35 retromer complex component JBrowse link 19 27,464,937 27,500,636 RGD:1600115
RGD:1624291
excitatory synapse assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Grid2 glutamate ionotropic receptor delta type subunit 2 JBrowse link 4 94,068,112 95,476,864 RGD:1600115
RGD:1624291
G Lrrc4 leucine rich repeat containing 4 JBrowse link 4 56,110,658 56,114,254 RGD:1624291
RGD:1600115
G Nlgn1 neuroligin 1 JBrowse link 2 111,057,291 111,973,681 RGD:1624291
RGD:1600115
G Nptn neuroplastin JBrowse link 8 63,379,062 63,445,694 RGD:1624291
G Plxnb2 plexin B2 JBrowse link 7 130,135,484 130,161,568 RGD:1600115
RGD:1624291
gephyrin clustering involved in postsynaptic density assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nlgn2 neuroligin 2 JBrowse link 10 56,431,586 56,444,847 RGD:1624291
RGD:1600115
G Nrxn1 neurexin 1 JBrowse link 6 13,886,757 15,191,660 RGD:1600115
RGD:1624291
G Nrxn2 neurexin 2 JBrowse link 1 221,792,191 221,908,047 RGD:1600115
RGD:1624291
inhibitory synapse assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gabra1 gamma-aminobutyric acid type A receptor alpha1 subunit JBrowse link 10 27,310,718 27,371,802 RGD:1600115
RGD:1624291
G Gabra2 gamma-aminobutyric acid type A receptor alpha2 subunit JBrowse link 14 39,662,411 39,801,082 RGD:1600115
RGD:1624291
G Gabrb2 gamma-aminobutyric acid type A receptor beta 2 subunit JBrowse link 10 27,973,694 28,193,072 RGD:1600115
RGD:1624291
G Gabrb3 gamma-aminobutyric acid type A receptor beta 3 subunit JBrowse link 1 113,034,251 113,265,364 RGD:1600115
RGD:1624291
G Gabrg2 gamma-aminobutyric acid type A receptor gamma 2 subunit JBrowse link 10 27,090,913 27,179,786 RGD:1600115
RGD:1624291
G Nlgn2 neuroligin 2 JBrowse link 10 56,431,586 56,444,847 RGD:1624291
RGD:1600115
G Npas4 neuronal PAS domain protein 4 JBrowse link 1 220,260,310 220,278,177 RGD:1624291
RGD:1600115
G Plxnb1 plexin B1 JBrowse link 8 117,832,826 117,858,515 RGD:1600115
RGD:1624291
negative regulation of presynapse assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 JBrowse link 1 248,952,896 248,956,579 RGD:1624291
negative regulation of synapse assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Epha7 Eph receptor A7 JBrowse link 5 43,602,744 43,761,198 RGD:1624291
RGD:1600115
G Mdga1 MAM domain containing glycosylphosphatidylinositol anchor 1 JBrowse link 20 8,515,142 8,574,632 RGD:9743980
G Ptk2 protein tyrosine kinase 2 JBrowse link 7 114,436,419 114,611,317 RGD:1624291
RGD:1600115
G Slit1 slit guidance ligand 1 JBrowse link 1 260,843,481 260,992,366 RGD:1600115
G Tlr2 toll-like receptor 2 JBrowse link 2 182,840,171 182,846,061 RGD:1624291
G Wnt5a Wnt family member 5A JBrowse link 16 4,469,451 4,490,271 RGD:1624291
RGD:1600115
neurexin clustering involved in presynaptic membrane assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nlgn1 neuroligin 1 JBrowse link 2 111,057,291 111,973,681 RGD:1624291
RGD:1600115
neuroligin clustering involved in postsynaptic membrane assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdh2 cadherin 2 JBrowse link 18 8,146,971 8,366,037 RGD:1624291
RGD:1600115
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 JBrowse link 4 10,995,241 12,472,423 RGD:1624291
RGD:1600115
G Nrxn1 neurexin 1 JBrowse link 6 13,886,757 15,191,660 RGD:1600115
RGD:1624291
G Nrxn2 neurexin 2 JBrowse link 1 221,792,191 221,908,047 RGD:1600115
RGD:1624291
positive regulation of excitatory synapse assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sema4a semaphorin 4A JBrowse link 2 187,799,568 187,823,014 RGD:1600115
RGD:1624291
G Vstm5 V-set and transmembrane domain containing 5 JBrowse link 8 13,796,009 13,816,125 RGD:1624291
RGD:1600115
G Wnt7a Wnt family member 7A JBrowse link 4 122,994,425 123,040,609 RGD:1624291
RGD:1600115
positive regulation of inhibitory synapse assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sema4a semaphorin 4A JBrowse link 2 187,799,568 187,823,014 RGD:1600115
RGD:1624291
G Sema4d semaphorin 4D JBrowse link 17 13,516,276 13,538,513 RGD:1600115
RGD:1624291
positive regulation of presynaptic active zone assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nlgn1 neuroligin 1 JBrowse link 2 111,057,291 111,973,681 RGD:8554205
G Nrxn1 neurexin 1 JBrowse link 6 13,886,757 15,191,660 RGD:8554205
positive regulation of synapse assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actr3 actin related protein 3 JBrowse link 13 41,695,520 41,738,622 RGD:2306201
G Adgrb1 adhesion G protein-coupled receptor B1 JBrowse link 7 115,766,484 115,828,514 RGD:1624291
G Adgrb2 adhesion G protein-coupled receptor B2 JBrowse link 5 148,168,530 148,231,587 RGD:1624291
RGD:1600115
G Adgrb3 adhesion G protein-coupled receptor B3 JBrowse link 9 31,280,623 32,022,535 RGD:1624291
RGD:1600115
G Adgre5 adhesion G protein-coupled receptor E5 JBrowse link 19 24,854,981 24,875,712 RGD:1624291
G Adgrl1 adhesion G protein-coupled receptor L1 JBrowse link 19 25,029,037 25,069,146 RGD:1624291
RGD:1600115
G Adgrl2 adhesion G protein-coupled receptor L2 JBrowse link 2 258,792,838 258,997,145 RGD:1624291
G Adgrl3 adhesion G protein-coupled receptor L3 JBrowse link 14 28,362,176 29,226,085 RGD:1624291
RGD:1600115
G Adnp activity-dependent neuroprotector homeobox JBrowse link 3 164,937,188 164,964,819 RGD:2312779
G Amigo1 adhesion molecule with Ig like domain 1 JBrowse link 2 210,977,125 210,982,582 RGD:1624291
RGD:1600115
G Amigo2 adhesion molecule with Ig like domain 2 JBrowse link 7 138,704,124 138,707,221 RGD:1624291
RGD:1600115
G Amigo3 adhesion molecule with Ig like domain 3 JBrowse link 8 116,830,773 116,832,299 RGD:1624291
G Asic2 acid sensing ion channel subunit 2 JBrowse link 10 68,247,800 69,347,223 RGD:1624291
RGD:1600115
G Bdnf brain-derived neurotrophic factor JBrowse link 3 100,768,637 100,819,216 RGD:1624291
RGD:1600115
G Bhlhb9 basic helix-loop-helix family member B9 JBrowse link X 106,359,981 106,393,457 RGD:1624291
RGD:1600115
G Cbln1 cerebellin 1 precursor JBrowse link 19 20,607,507 20,611,316 RGD:1624291
RGD:1600115
G Cbln2 cerebellin 2 precursor JBrowse link 18 83,775,568 83,783,841 RGD:1624291
RGD:1600115
G Clstn1 calsyntenin 1 JBrowse link 5 166,533,262 166,601,686 RGD:1624291
RGD:13792537
G Clstn2 calsyntenin 2 JBrowse link 8 105,322,577 106,036,821 RGD:1624291
RGD:13792537
RGD:1600115
G Clstn3 calsyntenin 3 JBrowse link 4 157,044,736 157,078,013 RGD:1624291
RGD:13792537
RGD:1600115
G Cux2 cut-like homeobox 2 JBrowse link 12 40,016,774 40,221,067 RGD:1624291
RGD:1600115
G Dlg5 discs large MAGUK scaffold protein 5 JBrowse link 15 120,213 230,312 RGD:1624291
RGD:1600115
G Eef2k eukaryotic elongation factor-2 kinase JBrowse link 1 190,780,211 190,839,926 RGD:10401235
G Efna5 ephrin A5 JBrowse link 9 110,054,002 110,329,878 RGD:1624291
G Ephb1 Eph receptor B1 JBrowse link 8 110,376,954 110,813,193 RGD:1624291
RGD:1600115
G Ephb2 Eph receptor B2 JBrowse link 5 155,024,478 155,143,539 RGD:1624291
RGD:1600115
G Ephb3 Eph receptor B3 JBrowse link 11 83,527,960 83,546,742 RGD:1624291
RGD:1600115
G Flrt1 fibronectin leucine rich transmembrane protein 1 JBrowse link 1 222,340,481 222,417,915 RGD:1624291
RGD:1600115
G Flrt2 fibronectin leucine rich transmembrane protein 2 JBrowse link 6 119,518,459 119,613,534 RGD:1624291
RGD:1600115
G Flrt3 fibronectin leucine rich transmembrane protein 3 JBrowse link 3 134,684,446 134,696,586 RGD:1624291
RGD:1600115
G Ghrl ghrelin and obestatin prepropeptide JBrowse link 4 145,674,157 145,678,066 RGD:1624291
RGD:1600115
G Grid2 glutamate ionotropic receptor delta type subunit 2 JBrowse link 4 94,068,112 95,476,864 RGD:1600115
RGD:1624291
G Il1rap interleukin 1 receptor accessory protein JBrowse link 11 77,456,648 77,593,208 RGD:1600115
RGD:1624291
G Il1rapl1 interleukin 1 receptor accessory protein-like 1 JBrowse link X 55,439,388 57,004,865 RGD:1624291
RGD:1600115
G Lingo2 leucine rich repeat and Ig domain containing 2 JBrowse link 5 51,466,367 51,638,161 RGD:1624291
G Lingo4 leucine rich repeat and Ig domain containing 4 JBrowse link 2 195,617,044 195,643,502 RGD:1624291
G LOC102547963 leucine-rich repeat and transmembrane domain-containing protein 1-like JBrowse link 16 5,078,506 5,089,888 RGD:1624291
G Lrrc24 leucine rich repeat containing 24 JBrowse link 7 117,779,733 117,786,872 RGD:1624291
RGD:1600115
G Lrrc4b leucine rich repeat containing 4B JBrowse link 1 100,434,418 100,468,914 RGD:1624291
RGD:1600115
G Lrrn1 leucine rich repeat neuronal 1 JBrowse link 4 139,633,310 139,679,730 RGD:1624291
RGD:1600115
G Lrrn3 leucine rich repeat neuronal 3 JBrowse link 6 61,374,328 61,405,195 RGD:1624291
RGD:1600115
G LRRTM1 leucine rich repeat transmembrane neuronal 1 JBrowse link 4 108,300,927 108,316,373 RGD:1624291
RGD:1600115
G Lrrtm2 leucine rich repeat transmembrane neuronal 2 JBrowse link 18 28,012,877 28,017,925 RGD:1624291
RGD:1600115
G Lrrtm3 leucine rich repeat transmembrane neuronal 3 JBrowse link 20 25,990,304 26,163,656 RGD:1624291
RGD:1600115
G Lrrtm4 leucine rich repeat transmembrane neuronal 4 JBrowse link 4 110,699,577 111,497,643 RGD:1624291
G Lrtm1 leucine-rich repeats and transmembrane domains 1 JBrowse link 16 4,993,728 5,005,110 RGD:1624291
G Lrtm2 leucine-rich repeats and transmembrane domains 2 JBrowse link 4 151,375,568 151,397,485 RGD:1624291
RGD:1600115
G Nlgn1 neuroligin 1 JBrowse link 2 111,057,291 111,973,681 RGD:1624291
RGD:8553502
RGD:8554205
G Nlgn2 neuroligin 2 JBrowse link 10 56,431,586 56,444,847 RGD:8554205
G Nlgn3 neuroligin 3 JBrowse link X 71,199,390 71,227,460 RGD:8554205
RGD:1600115
RGD:1624291
G Nrxn1 neurexin 1 JBrowse link 6 13,886,757 15,191,660 RGD:1624291
RGD:1600115
RGD:8554205
G Ntrk1 neurotrophic receptor tyrosine kinase 1 JBrowse link 2 187,143,568 187,160,373 RGD:1624291
RGD:1600115
G Ntrk2 neurotrophic receptor tyrosine kinase 2 JBrowse link 17 5,934,651 6,245,778 RGD:1624291
RGD:1600115
G Ntrk3 neurotrophic receptor tyrosine kinase 3 JBrowse link 1 139,890,537 140,262,503 RGD:1624291
RGD:1600115
G Oxt oxytocin/neurophysin I prepropeptide JBrowse link 3 123,106,694 123,107,534 RGD:2304173
G Oxtr oxytocin receptor JBrowse link 4 144,399,326 144,417,598 RGD:2304173
G Prkca protein kinase C, alpha JBrowse link 10 96,186,509 96,585,168 RGD:2293299
G Ptprd protein tyrosine phosphatase, receptor type, D JBrowse link 5 92,862,229 93,514,071 RGD:1624291
G Slitrk1 SLIT and NTRK-like family, member 1 JBrowse link 15 93,303,382 93,307,420 RGD:1624291
RGD:1600115
G Slitrk2 SLIT and NTRK-like family, member 2 JBrowse link X 151,099,388 151,111,816 RGD:1624291
RGD:1600115
G Slitrk3 SLIT and NTRK-like family, member 3 JBrowse link 2 170,446,582 170,461,513 RGD:1624291
RGD:1600115
G Slitrk4 SLIT and NTRK-like family, member 4 JBrowse link X 147,582,195 147,589,529 RGD:1624291
G Slitrk5 SLIT and NTRK-like family, member 5 JBrowse link 15 96,817,907 96,826,760 RGD:1624291
RGD:1600115
G Slitrk6 SLIT and NTRK-like family, member 6 JBrowse link 15 95,507,632 95,514,259 RGD:1624291
RGD:1600115
G Srpx2 sushi-repeat-containing protein, X-linked 2 JBrowse link X 104,734,035 104,760,658 RGD:8553698
RGD:1624291
G Stau2 staufen double-stranded RNA binding protein 2 JBrowse link 5 2,257,910 2,497,429 RGD:10043163
G Syndig1 synapse differentiation inducing 1 JBrowse link 3 145,031,427 145,199,273 RGD:8554654
RGD:1624291
G Thbs2 thrombospondin 2 JBrowse link 1 56,653,929 56,683,571 RGD:1580068
G Tpbg trophoblast glycoprotein JBrowse link 8 93,491,761 93,495,132 RGD:1624291
RGD:1600115
G Ube2v2 ubiquitin conjugating enzyme E2 V2 JBrowse link 11 89,557,273 89,591,175 RGD:1299567
G Wnt7a Wnt family member 7A JBrowse link 4 122,994,425 123,040,609 RGD:1624291
positive regulation of synaptic growth at neuromuscular junction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agrn agrin JBrowse link 5 173,589,910 173,622,813 RGD:1624291
RGD:1600115
G Musk muscle associated receptor tyrosine kinase JBrowse link 5 75,392,790 75,498,694 RGD:2317108
postsynaptic density assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:1624291
RGD:1600115
G Shank1 SH3 and multiple ankyrin repeat domains 1 JBrowse link 1 100,297,137 100,344,377 RGD:13792537
G Shank2 SH3 and multiple ankyrin repeat domains 2 JBrowse link 1 217,149,156 217,593,950 RGD:13792537
G Shank3 SH3 and multiple ankyrin repeat domains 3 JBrowse link 7 130,474,278 130,534,679 RGD:1624291
RGD:13792537
RGD:1600115
postsynaptic membrane assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cel carboxyl ester lipase JBrowse link 3 7,134,021 7,141,522 RGD:13792537
G Ephb2 Eph receptor B2 JBrowse link 5 155,024,478 155,143,539 RGD:13702452
G Lrp4 LDL receptor related protein 4 JBrowse link 3 80,362,643 80,416,684 RGD:1624291
RGD:1600115
G Nlgn1 neuroligin 1 JBrowse link 2 111,057,291 111,973,681 RGD:1600115
RGD:13792537
RGD:1624291
G Nlgn2 neuroligin 2 JBrowse link 10 56,431,586 56,444,847 RGD:1624291
RGD:13792537
RGD:1600115
G Nlgn3 neuroligin 3 JBrowse link X 71,199,390 71,227,460 RGD:1624291
RGD:13792537
RGD:1600115
G Nrxn1 neurexin 1 JBrowse link 6 13,886,757 15,191,660 RGD:1600115
RGD:1624291
G Nrxn2 neurexin 2 JBrowse link 1 221,792,191 221,908,047 RGD:1600115
RGD:1624291
postsynaptic specialization assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nlgn1 neuroligin 1 JBrowse link 2 111,057,291 111,973,681 RGD:1600115
RGD:1624291
G Nlgn2 neuroligin 2 JBrowse link 10 56,431,586 56,444,847 RGD:1624291
G Nlgn3 neuroligin 3 JBrowse link X 71,199,390 71,227,460 RGD:9831151
G Ntng2 netrin G2 JBrowse link 3 7,742,511 7,800,834 RGD:1600115
RGD:1624291
presynapse assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cadm1 cell adhesion molecule 1 JBrowse link 8 51,858,906 52,200,591 RGD:1624291
G Cntn5 contactin 5 JBrowse link 8 7,812,371 9,033,962 RGD:1600115
RGD:1624291
G Dvl1 dishevelled segment polarity protein 1 JBrowse link 5 173,295,948 173,308,014 RGD:1600115
RGD:1624291
G Efnb1 ephrin B1 JBrowse link X 68,891,227 68,904,034 RGD:13702172
G Efnb2 ephrin B2 JBrowse link 16 86,631,151 86,672,050 RGD:13702172
G Fzd5 frizzled class receptor 5 JBrowse link 9 71,443,784 71,445,541 RGD:13702329
G Lrrtm3 leucine rich repeat transmembrane neuronal 3 JBrowse link 20 25,990,304 26,163,656 RGD:1600115
RGD:1624291
G Nrxn1 neurexin 1 JBrowse link 6 13,886,757 15,191,660 RGD:13702298
G Sdcbp syndecan binding protein JBrowse link 5 19,471,664 19,498,499 RGD:13702172
presynaptic active zone assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bsn bassoon (presynaptic cytomatrix protein) JBrowse link 8 116,873,721 116,965,396 RGD:14390063
G Pcdh17 protocadherin 17 JBrowse link 15 67,555,835 67,647,990 RGD:1624291
RGD:1600115
G Pclo piccolo (presynaptic cytomatrix protein) JBrowse link 4 16,454,904 17,058,921 RGD:14390063
presynaptic membrane assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cel carboxyl ester lipase JBrowse link 3 7,134,021 7,141,522 RGD:13792537
G Il1rapl1 interleukin 1 receptor accessory protein-like 1 JBrowse link X 55,439,388 57,004,865 RGD:1624291
G Lrp4 LDL receptor related protein 4 JBrowse link 3 80,362,643 80,416,684 RGD:1624291
RGD:1600115
G Nlgn1 neuroligin 1 JBrowse link 2 111,057,291 111,973,681 RGD:8554205
RGD:13792537
RGD:1624291
RGD:8554379
G Nlgn2 neuroligin 2 JBrowse link 10 56,431,586 56,444,847 RGD:8554205
RGD:13792537
RGD:1624291
RGD:1600115
G Nlgn3 neuroligin 3 JBrowse link X 71,199,390 71,227,460 RGD:8554205
RGD:13792537
G Nrxn1 neurexin 1 JBrowse link 6 13,886,757 15,191,660 RGD:1624291
RGD:1600115
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:1624291
RGD:1600115
G Ptprd protein tyrosine phosphatase, receptor type, D JBrowse link 5 92,862,229 93,514,071 RGD:1624291
regulation of inhibitory synapse assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lhfpl4 LHFPL tetraspan subfamily member 4 JBrowse link 4 145,117,533 145,147,397 RGD:1600115
RGD:1624291
regulation of postsynaptic density assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbln1 cerebellin 1 precursor JBrowse link 19 20,607,507 20,611,316 RGD:1600115
RGD:1624291
G Grid2 glutamate ionotropic receptor delta type subunit 2 JBrowse link 4 94,068,112 95,476,864 RGD:1600115
RGD:1624291
G Il1rap interleukin 1 receptor accessory protein JBrowse link 11 77,456,648 77,593,208 RGD:1624291
RGD:1600115
G Lrfn1 leucine rich repeat and fibronectin type III domain containing 1 JBrowse link 1 85,290,887 85,308,498 RGD:13702351
G Lrfn4 leucine rich repeat and fibronectin type III domain containing 4 JBrowse link 1 219,850,037 219,855,771 RGD:13702463
G Lrrc4b leucine rich repeat containing 4B JBrowse link 1 100,434,418 100,468,914 RGD:13702321
G LRRTM1 leucine rich repeat transmembrane neuronal 1 JBrowse link 4 108,300,927 108,316,373 RGD:8554788
G Lrrtm2 leucine rich repeat transmembrane neuronal 2 JBrowse link 18 28,012,877 28,017,925 RGD:8554788
G Nptx1 neuronal pentraxin 1 JBrowse link 10 108,682,637 108,691,592 RGD:13702141
G Nrxn1 neurexin 1 JBrowse link 6 13,886,757 15,191,660 RGD:1624291
G Ntrk3 neurotrophic receptor tyrosine kinase 3 JBrowse link 1 139,890,537 140,262,503 RGD:13702219
G Ptprd protein tyrosine phosphatase, receptor type, D JBrowse link 5 92,862,229 93,514,071 RGD:13702141
RGD:1624291
G Ptprs protein tyrosine phosphatase, receptor type, S JBrowse link 9 10,585,360 10,646,205 RGD:1600115
RGD:1624291
RGD:13702219
G Sipa1l1 signal-induced proliferation-associated 1 like 1 JBrowse link 6 106,052,212 106,163,249 RGD:8554032
regulation of postsynaptic specialization assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arhgef9 Cdc42 guanine nucleotide exchange factor 9 JBrowse link X 64,249,576 64,428,444 RGD:1624291
G Gap43 growth associated protein 43 JBrowse link 11 58,624,198 58,717,916 RGD:13702431
G Nptxr neuronal pentraxin receptor JBrowse link 7 121,011,678 121,029,754 RGD:1624291
G Nrxn1 neurexin 1 JBrowse link 6 13,886,757 15,191,660 RGD:1624291
G Numb NUMB, endocytic adaptor protein JBrowse link 6 107,279,917 107,325,345 RGD:2302413
regulation of presynapse assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G App amyloid beta precursor protein JBrowse link 11 24,425,013 24,641,872 RGD:1600115
RGD:1624291
G Arf6 ADP-ribosylation factor 6 JBrowse link 6 91,697,109 91,698,257 RGD:8554141
G Cbln1 cerebellin 1 precursor JBrowse link 19 20,607,507 20,611,316 RGD:1600115
RGD:1624291
G Cbln2 cerebellin 2 precursor JBrowse link 18 83,775,568 83,783,841 RGD:1600115
RGD:1624291
G Clstn3 calsyntenin 3 JBrowse link 4 157,044,736 157,078,013 RGD:1600115
RGD:1624291
G Eif4g1 eukaryotic translation initiation factor 4 gamma, 1 JBrowse link 11 83,907,659 83,927,683 RGD:1624291
RGD:1600115
G Farp1 FERM, ARH/RhoGEF and pleckstrin domain protein 1 JBrowse link 15 106,375,298 106,625,837 RGD:8554251
G Fzd1 frizzled class receptor 1 JBrowse link 4 26,470,864 26,475,262 RGD:1600115
RGD:1624291
G Gpc4 glypican 4 JBrowse link X 139,354,325 139,464,876 RGD:13702303
G Grid2 glutamate ionotropic receptor delta type subunit 2 JBrowse link 4 94,068,112 95,476,864 RGD:13702347
RGD:13702257
G Il1rap interleukin 1 receptor accessory protein JBrowse link 11 77,456,648 77,593,208 RGD:1624291
RGD:1600115
G Il1rapl1 interleukin 1 receptor accessory protein-like 1 JBrowse link X 55,439,388 57,004,865 RGD:1600115
RGD:1624291
G Il1rapl2 interleukin 1 receptor accessory protein-like 2 JBrowse link X 108,287,034 109,851,075 RGD:1600115
RGD:1624291
G Lrfn3 leucine rich repeat and fibronectin type III domain containing 3 JBrowse link 1 88,819,439 88,827,002 RGD:13702184
G Lrfn4 leucine rich repeat and fibronectin type III domain containing 4 JBrowse link 1 219,850,037 219,855,771 RGD:1600115
RGD:1624291
G Lrfn5 leucine rich repeat and fibronectin type III domain containing 5 JBrowse link 6 83,082,593 83,438,601 RGD:1600115
RGD:1624291
G Lrrc4b leucine rich repeat containing 4B JBrowse link 1 100,434,418 100,468,914 RGD:13702321
G LRRTM1 leucine rich repeat transmembrane neuronal 1 JBrowse link 4 108,300,927 108,316,373 RGD:8554788
G Mdga1 MAM domain containing glycosylphosphatidylinositol anchor 1 JBrowse link 20 8,515,142 8,574,632 RGD:1600115
RGD:1624291
G Mdga2 MAM domain containing glycosylphosphatidylinositol anchor 2 JBrowse link 6 88,442,620 89,292,454 RGD:1624291
G Nlgn2 neuroligin 2 JBrowse link 10 56,431,586 56,444,847 RGD:13702379
G Nrxn1 neurexin 1 JBrowse link 6 13,886,757 15,191,660 RGD:1624291
G Ntng2 netrin G2 JBrowse link 3 7,742,511 7,800,834 RGD:1600115
RGD:1624291
G Ntrk3 neurotrophic receptor tyrosine kinase 3 JBrowse link 1 139,890,537 140,262,503 RGD:13702219
G Ptprd protein tyrosine phosphatase, receptor type, D JBrowse link 5 92,862,229 93,514,071 RGD:1600115
RGD:1624291
G Ptprs protein tyrosine phosphatase, receptor type, S JBrowse link 9 10,585,360 10,646,205 RGD:13702219
G Slitrk1 SLIT and NTRK-like family, member 1 JBrowse link 15 93,303,382 93,307,420 RGD:1600115
RGD:1624291
G Slitrk2 SLIT and NTRK-like family, member 2 JBrowse link X 151,099,388 151,111,816 RGD:1624291
G Slitrk3 SLIT and NTRK-like family, member 3 JBrowse link 2 170,446,582 170,461,513 RGD:1600115
RGD:1624291
G Snca synuclein alpha JBrowse link 4 90,782,412 90,883,236 RGD:1624291
RGD:1600115
G Wnt3a Wnt family member 3A JBrowse link 10 45,598,898 45,643,151 RGD:1600115
RGD:1624291
G Wnt7a Wnt family member 7A JBrowse link 4 122,994,425 123,040,609 RGD:1600115
RGD:1624291
regulation of synapse assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adgrb1 adhesion G protein-coupled receptor B1 JBrowse link 7 115,766,484 115,828,514 RGD:13831359
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit JBrowse link 2 189,088,570 189,096,785 RGD:1624291
RGD:1600115
G Ephb2 Eph receptor B2 JBrowse link 5 155,024,478 155,143,539 RGD:1624291
G Ghsr growth hormone secretagogue receptor JBrowse link 2 113,065,953 113,071,265 RGD:1624291
RGD:1600115
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 JBrowse link 3 2,507,745 2,534,664 RGD:1624291
RGD:1600115
G Lrrtm4 leucine rich repeat transmembrane neuronal 4 JBrowse link 4 110,699,577 111,497,643 RGD:1624291
G Mef2c myocyte enhancer factor 2C JBrowse link 2 11,658,534 11,822,788 RGD:1624291
RGD:1600115
G Nectin1 nectin cell adhesion molecule 1 JBrowse link 8 48,094,233 48,198,499 RGD:1599809
G Nrg2 neuregulin 2 JBrowse link 18 28,835,391 29,015,552 RGD:11070025
G Ntn1 netrin 1 JBrowse link 10 54,761,925 54,982,072 RGD:1600115
RGD:1624291
G Pdlim5 PDZ and LIM domain 5 JBrowse link 2 247,815,214 247,989,198 RGD:8554803
G Ppp1r9a protein phosphatase 1, regulatory subunit 9A JBrowse link 4 29,976,485 30,247,371 RGD:10043779
G Rab17 RAB17, member RAS oncogene family JBrowse link 9 98,118,907 98,131,883 RGD:1624291
RGD:1600115
G Snap25 synaptosome associated protein 25 JBrowse link 3 129,697,408 129,788,417 RGD:1581079
regulation of synaptic growth at neuromuscular junction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agrn agrin JBrowse link 5 173,589,910 173,622,813 RGD:1624291
RGD:1600115
G Colq collagen like tail subunit of asymmetric acetylcholinesterase JBrowse link 16 7,626,380 7,681,621 RGD:1624291
RGD:1600115
G Musk muscle associated receptor tyrosine kinase JBrowse link 5 75,392,790 75,498,694 RGD:1624291
RGD:1600115
G Six1 SIX homeobox 1 JBrowse link 6 95,929,060 95,934,296 RGD:1624291
RGD:1600115
G Six4 SIX homeobox 4 JBrowse link 6 95,984,868 95,999,709 RGD:1624291
RGD:1600115
synapse assembly involved in innervation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fbxo45 F-box protein 45 JBrowse link 11 71,795,977 71,811,858 RGD:1624291
RGD:13792537
synaptic growth at neuromuscular junction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G App amyloid beta precursor protein JBrowse link 11 24,425,013 24,641,872 RGD:1624291
RGD:1600115
G Lrp4 LDL receptor related protein 4 JBrowse link 3 80,362,643 80,416,684 RGD:1600115
RGD:1624291
G Shank1 SH3 and multiple ankyrin repeat domains 1 JBrowse link 1 100,297,137 100,344,377 RGD:13792537
G Shank2 SH3 and multiple ankyrin repeat domains 2 JBrowse link 1 217,149,156 217,593,950 RGD:13792537
G Shank3 SH3 and multiple ankyrin repeat domains 3 JBrowse link 7 130,474,278 130,534,679 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17896
    cellular process 16040
      cellular component organization 6046
        cellular component assembly 2909
          synapse assembly 184
            excitatory synapse assembly + 27
            inhibitory synapse assembly + 11
            negative regulation of synapse assembly + 7
            positive regulation of synapse assembly + 76
            postsynapse assembly + 32
            presynapse assembly + 49
            regulation of synapse assembly + 120
            synapse assembly involved in innervation 1
            synaptic growth at neuromuscular junction + 10
Path 2
Term Annotations click to browse term
  biological_process 17896
    developmental process 6323
      anatomical structure development 5930
        multicellular organism development 5425
          system development 5004
            nervous system development 2550
              synapse assembly 184
                excitatory synapse assembly + 27
                inhibitory synapse assembly + 11
                negative regulation of synapse assembly + 7
                positive regulation of synapse assembly + 76
                postsynapse assembly + 32
                presynapse assembly + 49
                regulation of synapse assembly + 120
                synapse assembly involved in innervation 1
                synaptic growth at neuromuscular junction + 10
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.