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ONTOLOGY REPORT - ANNOTATIONS


Term:endoderm development
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Accession:GO:0007492 term browser browse the term
Definition:The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues.


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endoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arc activity-regulated cytoskeleton-associated protein ISO MGI:MGI:2386454 (MGI:MGI:1355000|PMID:10727859) RGD PMID:10727859 MGI:MGI:1355000 NCBI chr 7:115,907,097...115,911,059
Ensembl chr 7:115,907,097...115,910,541
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO
IEA
(MGI:MGI:5705244|PMID:24835669)
GO_REF:0000107
RGD
Ensembl
PMID:24835669 GO_REF:0000107, MGI:MGI:5705244 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:MGI:2158342 (MGI:MGI:3051920|PMID:15136140) RGD PMID:15136140 MGI:MGI:3051920 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Bptf bromodomain PHD finger transcription factor ISO
IEA
MGI:MGI:3841299 (MGI:MGI:3840601|PMID:18974875)
GO_REF:0000107
RGD
Ensembl
PMID:18974875 GO_REF:0000107, MGI:MGI:3840601 NCBI chr10:95,248,573...95,350,162
Ensembl chr10:95,250,294...95,349,789
JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 ISO MGI:MGI:1857543 (MGI:MGI:2136711|PMID:11412024) RGD PMID:11412024 MGI:MGI:2136711 NCBI chr 9:41,045,352...41,051,979
Ensembl chr 9:41,045,363...41,052,024
JBrowse link
G Dab2 DAB adaptor protein 2 NOT ISO (MGI:MGI:5319462|PMID:22411869)
(MGI:MGI:5319713|PMID:22525672)
RGD PMID:22411869, PMID:22525672 MGI:MGI:5319462, MGI:MGI:5319713 NCBI chr 2:55,747,353...55,768,848
Ensembl chr 2:55,747,318...55,768,270
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO MGI:MGI:2387760 (MGI:MGI:3789532|PMID:18403408) RGD PMID:18403408 MGI:MGI:3789532 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
JBrowse link
G Eomes eomesodermin ISO MGI:MGI:2656539|MGI:MGI:5698524 (MGI:MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:MGI:5697986 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:MGI:3822451 (MGI:MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:MGI:3821807 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO MGI:MGI:1888710 (MGI:MGI:1888607|PMID:10926768) RGD PMID:10926768 MGI:MGI:1888607 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
G Gdf1 growth differentiation factor 1 ISO MGI:MGI:95686 (MGI:MGI:3763867|PMID:17936261) RGD PMID:17936261 MGI:MGI:3763867 NCBI chr16:20,845,580...20,860,789
Ensembl chr16:20,845,576...20,860,767
JBrowse link
G Gdf3 growth differentiation factor 3 ISO MGI:MGI:3612535|MGI:MGI:95683 (MGI:MGI:3611720|PMID:16368929), (MGI:MGI:3763867|PMID:17936261) RGD PMID:16368929, PMID:17936261 MGI:MGI:3611720, MGI:MGI:3763867 NCBI chr 4:155,417,667...155,422,014
Ensembl chr 4:155,417,004...155,421,998
JBrowse link
G Hdac1 histone deacetylase 1 ISO (MGI:MGI:3041938|PMID:15060137) RGD PMID:15060137 MGI:MGI:3041938 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723
JBrowse link
G Hhex hematopoietically expressed homeobox ISO MGI:MGI:2177762 (MGI:MGI:3703395|PMID:16364283) RGD PMID:16364283 MGI:MGI:3703395 NCBI chr 1:256,101,994...256,107,581
Ensembl chr 1:256,101,903...256,107,649
JBrowse link
G Hnf1b HNF1 homeobox B ISO MGI:MGI:1857856|MGI:MGI:2181390 (MGI:MGI:1346632|PMID:10518496), (MGI:MGI:1346633|PMID:10518495), (MGI:MGI:3807614|PMID:18635606) RGD PMID:10518495, PMID:10518496, PMID:18635606 MGI:MGI:1346632, MGI:MGI:1346633, MGI:MGI:3807614 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902
JBrowse link
G Kif16b kinesin family member 16B ISO (MGI:MGI:4889011|PMID:21238925) RGD PMID:21238925 MGI:MGI:4889011 NCBI chr 3:136,596,621...136,936,809
Ensembl chr 3:136,657,480...136,936,674
JBrowse link
G Lhx1 LIM homeobox 1 ISO MGI:MGI:2656539|MGI:MGI:5698524 (MGI:MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:MGI:5697986 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Med12 mediator complex subunit 12 ISO MGI:MGI:4839486 (MGI:MGI:4839544|PMID:20589884) RGD PMID:20589884 MGI:MGI:4839544 NCBI chr  X:71,174,653...71,197,812
Ensembl chr  X:71,174,699...71,197,812
JBrowse link
G Mixl1 Mix paired-like homeobox 1 ISO MGI:MGI:2387828 (MGI:MGI:2181739|PMID:12117810) RGD PMID:12117810 MGI:MGI:2181739 NCBI chr13:97,278,258...97,282,299
Ensembl chr13:98,973,041...98,975,426
Ensembl chr13:98,973,041...98,975,426
JBrowse link
G Nckap1 NCK-associated protein 1 ISO MGI:MGI:3578145 (MGI:MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
JBrowse link
G Nkx2-1 NK2 homeobox 1 IEA
ISO
GO_REF:0000107
MGI:MGI:1857494 (MGI:MGI:1335655|PMID:10208743), (MGI:MGI:78065|PMID:8557195)
Ensembl
RGD
PMID:8557195, PMID:10208743 GO_REF:0000107, MGI:MGI:1335655, MGI:MGI:78065 NCBI chr 6:77,418,096...77,423,383
Ensembl chr 6:77,418,096...77,421,286
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:MGI:2158732 (MGI:MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:MGI:2155575 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Nog noggin ISO (MGI:MGI:5705244|PMID:24835669) RGD PMID:24835669 MGI:MGI:5705244 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Notch1 notch receptor 1 ISO MGI:MGI:2684314 (MGI:MGI:2682520|PMID:14657333) RGD PMID:14657333 MGI:MGI:2682520 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Onecut1 one cut homeobox 1 ISO
IEA
MGI:MGI:2179340 (MGI:MGI:1859126|PMID:10825208)
GO_REF:0000107
RGD
Ensembl
PMID:10825208 GO_REF:0000107, MGI:MGI:1859126 NCBI chr 8:81,765,779...81,799,894
Ensembl chr 8:81,766,041...81,793,577
JBrowse link
G Otx2 orthodenticle homeobox 2 ISO MGI:MGI:109448 (MGI:MGI:2136711|PMID:11412024) RGD PMID:11412024 MGI:MGI:2136711 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Pax9 paired box 9 ISO
IEA
MGI:MGI:1857887 (MGI:MGI:2178212|PMID:11932925)
GO_REF:0000107
RGD
Ensembl
PMID:11932925 GO_REF:0000107, MGI:MGI:2178212 NCBI chr 6:77,607,705...77,624,453
Ensembl chr 6:77,608,624...77,621,719
JBrowse link
G Pelo pelota mRNA surveillance and ribosome rescue factor ISO MGI:MGI:3764519|MGI:MGI:5705245 (MGI:MGI:5705244|PMID:24835669) RGD PMID:24835669 MGI:MGI:5705244 NCBI chr 2:47,266,758...47,268,526
Ensembl chr 2:47,266,738...47,268,625
JBrowse link
G Pthlh parathyroid hormone-like hormone ISO (MGI:MGI:1326851|PMID:9921650) RGD PMID:9921650 MGI:MGI:1326851 NCBI chr 4:181,663,425...181,674,181 JBrowse link
G Smad2 SMAD family member 2 ISO MGI:MGI:1201674 (MGI:MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:MGI:3618021 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Smad3 SMAD family member 3 ISO MGI:MGI:108051 (MGI:MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:MGI:3618021 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Smad4 SMAD family member 4 IEA
ISO
GO_REF:0000107
MGI:MGI:1858049|MGI:MGI:2656539|MGI:MGI:5698524 (MGI:MGI:1195384|PMID:9420335), (MGI:MGI:5697986|PMID:26494787)
Ensembl
RGD
PMID:9420335, PMID:26494787 GO_REF:0000107, MGI:MGI:1195384, MGI:MGI:5697986 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO MGI:MGI:2179440|MGI:MGI:3717121 (MGI:MGI:2178090|PMID:11973269), (MGI:MGI:4421275|PMID:19913509), (MGI:MGI:4946462|PMID:21146513) RGD PMID:11973269, PMID:19913509, PMID:21146513 MGI:MGI:2178090, MGI:MGI:4421275, MGI:MGI:4946462 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO (MGI:MGI:1326851|PMID:9921650) RGD PMID:9921650 MGI:MGI:1326851 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C ISO MGI:MGI:4124681 (MGI:MGI:5315650|PMID:22187428) RGD PMID:22187428 MGI:MGI:5315650 NCBI chr10:106,698,359...106,763,639
Ensembl chr10:106,712,127...106,762,043
JBrowse link
G Wnt8a Wnt family member 8A ISO (MGI:MGI:3609071|PMID:16256739) RGD PMID:16256739 MGI:MGI:3609071 NCBI chr18:27,331,236...27,336,829
Ensembl chr18:27,331,236...27,336,829
JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 ISO MGI:MGI:2150346 (MGI:MGI:1341493|PMID:10421635) RGD PMID:10421635 MGI:MGI:1341493 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
endoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 ISO MGI:MGI:1858007|MGI:MGI:2148567|MGI:MGI:4418897 (MGI:MGI:3625553|PMID:12194849), (MGI:MGI:5498579|PMID:23824574) RGD PMID:12194849, PMID:23824574 MGI:MGI:3625553, MGI:MGI:5498579 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (MGI:MGI:4415813|PMID:18462699) RGD PMID:18462699 MGI:MGI:4415813 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
JBrowse link
G Dusp1 dual specificity phosphatase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:16,970,642...16,973,425
Ensembl chr10:16,970,626...16,973,418
JBrowse link
G Dusp2 dual specificity phosphatase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:119,776,925...119,779,110
Ensembl chr 3:119,776,925...119,779,099
JBrowse link
G Dusp4 dual specificity phosphatase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:61,080,767...61,090,973
Ensembl chr16:61,078,175...61,091,169
JBrowse link
G Dusp5 dual specificity phosphatase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:274,245,184...274,258,595
Ensembl chr 1:274,245,184...274,258,595
JBrowse link
G Eomes eomesodermin ISO MGI:MGI:3774028 (MGI:MGI:3772748|PMID:18171685), (MGI:MGI:4887279|PMID:21245162), (MGI:MGI:5293253|PMID:21822279) RGD PMID:18171685, PMID:21245162, PMID:21822279 MGI:MGI:3772748, MGI:MGI:4887279, MGI:MGI:5293253 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Gata4 GATA binding protein 4 ISO MGI:MGI:2179511 (MGI:MGI:77407|PMID:8582296) RGD PMID:8582296 MGI:MGI:77407 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Lhx1 LIM homeobox 1 ISO
ISS
MGI:MGI:1857848 (MGI:MGI:3487194|PMID:15355796)
GO_REF:0000024
RGD
UniProt
PMID:15355796 GO_REF:0000024, MGI:MGI:3487194 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Mixl1 Mix paired-like homeobox 1 ISO MGI:MGI:2387829 (MGI:MGI:3695524|PMID:17151016) RGD PMID:17151016 MGI:MGI:3695524 NCBI chr13:97,278,258...97,282,299
Ensembl chr13:98,973,041...98,975,426
Ensembl chr13:98,973,041...98,975,426
JBrowse link
G Nog noggin ISO
IEA
(MGI:MGI:4415813|PMID:18462699)
GO_REF:0000107
RGD
Ensembl
PMID:18462699 GO_REF:0000107, MGI:MGI:4415813 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Smad2 SMAD family member 2 ISO (MGI:MGI:5293253|PMID:21822279) RGD PMID:21822279 MGI:MGI:5293253 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO (PMID:18682240) RGD PMID:18682240 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
G Sox7 SRY-box transcription factor 7 ISO (PMID:18682240) RGD PMID:18682240 NCBI chr15:47,293,699...47,300,460
Ensembl chr15:47,293,699...47,300,460
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C ISO MGI:MGI:4124681 (MGI:MGI:5315650|PMID:22187428) RGD PMID:22187428 MGI:MGI:5315650 NCBI chr10:106,698,359...106,763,639
Ensembl chr10:106,712,127...106,762,043
JBrowse link
endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col11a1 collagen type XI alpha 1 chain ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
JBrowse link
G Col12a1 collagen type XII alpha 1 chain IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:23154389)
Ensembl
RGD
PMID:23154389, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 8:87,042,820...87,150,701
Ensembl chr 8:87,040,799...87,158,368
JBrowse link
G Col4a2 collagen type IV alpha 2 chain ISO (PMID:23154389) RGD PMID:23154389 NCBI chr16:83,386,388...83,522,169
Ensembl chr16:83,387,364...83,438,561
JBrowse link
G Col6a1 collagen type VI alpha 1 chain ISO (PMID:23154389) RGD PMID:23154389 NCBI chr20:12,657,913...12,676,370
Ensembl chr20:12,658,065...12,675,561
JBrowse link
G Col7a1 collagen type VII alpha 1 chain ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 8:117,694,441...117,726,844
Ensembl chr 8:117,694,605...117,726,844
JBrowse link
G Col8a1 collagen type VIII alpha 1 chain ISO (PMID:23154389) RGD PMID:23154389 NCBI chr11:44,877,690...45,006,203
Ensembl chr11:44,877,859...45,007,891
JBrowse link
G Fn1 fibronectin 1 IEA
ISO
GO_REF:0000107
(PMID:23154389)
Ensembl
RGD
PMID:23154389 GO_REF:0000107 NCBI chr 9:78,900,111...78,969,018
Ensembl chr 9:78,900,103...78,969,078
JBrowse link
G Gata6 GATA binding protein 6 ISO MGI:MGI:2177785 (MGI:MGI:1315079|PMID:9832509) RGD PMID:9832509 MGI:MGI:1315079 NCBI chr18:2,415,821...2,447,087
Ensembl chr18:2,416,552...2,446,338
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO
ISS
(PMID:17624332)
GO_REF:0000024
RGD
UniProt
PMID:17624332 GO_REF:0000024 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G Hsbp1 heat shock factor binding protein 1 ISO (MGI:MGI:5553204|PMID:24380799) RGD PMID:24380799 MGI:MGI:5553204 NCBI chr19:51,985,196...51,989,528
Ensembl chr19:51,985,170...51,989,544
JBrowse link
G Inhba inhibin subunit beta A ISO (PMID:21828274) RGD PMID:21828274 NCBI chr17:51,894,869...51,919,998
Ensembl chr17:51,898,217...51,912,496
JBrowse link
G Itga4 integrin subunit alpha 4 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 3:66,178,745...66,265,547
Ensembl chr 3:66,193,059...66,263,960
JBrowse link
G Itga5 integrin subunit alpha 5 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 7:144,970,444...144,993,652
Ensembl chr 7:144,970,444...144,993,652
JBrowse link
G Itga7 integrin subunit alpha 7 IEA
ISO
GO_REF:0000107
(PMID:23154389)
Ensembl
RGD
PMID:23154389 GO_REF:0000107 NCBI chr 7:3,355,079...3,383,886
Ensembl chr 7:3,355,116...3,384,675
JBrowse link
G Itgav integrin subunit alpha V ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 3:71,113,269...71,205,958
Ensembl chr 3:71,114,100...71,202,411
JBrowse link
G Itgb2 integrin subunit beta 2 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr20:11,777,773...11,815,647
Ensembl chr20:11,777,783...11,815,647
JBrowse link
G Itgb5 integrin subunit beta 5 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr11:70,056,500...70,172,164
Ensembl chr11:70,056,500...70,172,372
JBrowse link
G Lama3 laminin subunit alpha 3 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr18:3,704,866...3,941,215
Ensembl chr18:3,705,916...3,940,838
JBrowse link
G Lamb1 laminin subunit beta 1 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 6:50,528,796...50,596,593
Ensembl chr 6:50,528,823...50,596,079
JBrowse link
G Lamb3 laminin subunit beta 3 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr13:112,031,614...112,073,187
Ensembl chr13:112,031,594...112,073,186
JBrowse link
G Mixl1 Mix paired-like homeobox 1 ISO (MGI:MGI:5447921|PMID:19038793) RGD PMID:19038793 MGI:MGI:5447921 NCBI chr13:97,278,258...97,282,299
Ensembl chr13:98,973,041...98,975,426
Ensembl chr13:98,973,041...98,975,426
JBrowse link
G Mmp14 matrix metallopeptidase 14 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr15:33,074,441...33,083,666
Ensembl chr15:33,074,441...33,083,655
JBrowse link
G Mmp15 matrix metallopeptidase 15 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr19:10,079,881...10,101,380
Ensembl chr19:10,079,765...10,101,451
JBrowse link
G Mmp2 matrix metallopeptidase 2 IEA
ISO
GO_REF:0000107
(PMID:23154389)
Ensembl
RGD
PMID:23154389 GO_REF:0000107 NCBI chr19:15,542,771...15,570,589
Ensembl chr19:15,542,765...15,570,611
JBrowse link
G Mmp8 matrix metallopeptidase 8 IEA
ISO
GO_REF:0000107
(PMID:23154389)
Ensembl
RGD
PMID:23154389 GO_REF:0000107 NCBI chr 8:5,768,808...5,777,741
Ensembl chr 8:5,768,811...5,778,702
JBrowse link
G Mmp9 matrix metallopeptidase 9 IEA
ISO
GO_REF:0000107
(PMID:23154389)
Ensembl
RGD
PMID:23154389 GO_REF:0000107 NCBI chr 3:161,413,410...161,421,473
Ensembl chr 3:161,413,298...161,421,520
JBrowse link
G Nodal nodal growth differentiation factor ISO (PMID:21741376) RGD PMID:21741376 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO (MGI:MGI:5908786|PMID:25242323) RGD PMID:25242323 MGI:MGI:5908786 NCBI chr 8:118,802,478...118,888,224
Ensembl chr 8:118,803,075...118,888,224
JBrowse link
G Vtn vitronectin ISO (PMID:23154389) RGD PMID:23154389 NCBI chr10:65,767,960...65,771,040
Ensembl chr10:65,767,053...65,771,038
JBrowse link
endodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3849235|PMID:19345177)
Ensembl
UniProt
RGD
PMID:19345177 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3849235 NCBI chr13:60,403,771...60,496,511
Ensembl chr13:60,403,771...60,496,511
JBrowse link
G Ctnnb1 catenin beta 1 ISO
IEA
MGI:MGI:1858007|MGI:MGI:2148567 (MGI:MGI:3625553|PMID:12194849)
GO_REF:0000107
RGD
Ensembl
PMID:12194849 GO_REF:0000107, MGI:MGI:3625553 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO (MGI:MGI:3849235|PMID:19345177) RGD PMID:19345177 MGI:MGI:3849235 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component ISO
ISS
(MGI:MGI:3849235|PMID:19345177)
GO_REF:0000024
RGD
UniProt
PMID:19345177 GO_REF:0000024, MGI:MGI:3849235 NCBI chr 8:82,380,906...82,405,293
Ensembl chr 8:82,380,757...82,405,644
JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component ISO
ISS
(MGI:MGI:3849235|PMID:19345177)
GO_REF:0000024
RGD
UniProt
PMID:19345177 GO_REF:0000024, MGI:MGI:3849235 NCBI chr 1:85,362,421...85,367,999
Ensembl chr 1:85,362,268...85,368,031
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO (MGI:MGI:1355046|PMID:10742100) RGD PMID:10742100 MGI:MGI:1355046 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) ISO (MGI:MGI:3849235|PMID:19345177) RGD PMID:19345177 MGI:MGI:3849235 NCBI chr 3:111,478,350...111,537,941
Ensembl chr 3:111,478,382...111,537,941
JBrowse link
endodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata6 GATA binding protein 6 ISO
IEA
(MGI:MGI:4442295|PMID:20308546)
GO_REF:0000107
RGD
Ensembl
PMID:20308546 GO_REF:0000107, MGI:MGI:4442295 NCBI chr18:2,415,821...2,447,087
Ensembl chr18:2,416,552...2,446,338
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO (MGI:MGI:4442295|PMID:20308546) RGD PMID:20308546 MGI:MGI:4442295 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin ISO
IBA
MGI:MGI:3774028 (MGI:MGI:4887279|PMID:21245162)
PMID:21873635
RGD PMID:21245162, PMID:21873635 MGI:MGI:4887279, RGD:13792537 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Hnf1b HNF1 homeobox B ISO MGI:MGI:1857856 (MGI:MGI:3807614|PMID:18635606) RGD PMID:18635606 MGI:MGI:3807614 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902
JBrowse link
G Nanog Nanog homeobox ISO (PMID:20713518) RGD PMID:20713518 NCBI chr 4:155,531,906...155,539,268
Ensembl chr 4:155,531,906...155,539,268
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO (PMID:20713518) RGD PMID:20713518 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO (PMID:21245162) RGD PMID:21245162 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
mesendoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:MGI:2158342 (MGI:MGI:3051920|PMID:15136140) RGD PMID:15136140 MGI:MGI:3051920 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Eomes eomesodermin ISO MGI:MGI:2656539|MGI:MGI:5698524 (MGI:MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:MGI:5697986 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Foxa2 forkhead box A2 ISO MGI:MGI:2656539|MGI:MGI:5698524 (MGI:MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:MGI:5697986 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Ldb1 LIM domain binding 1 ISO MGI:MGI:2656539|MGI:MGI:5698524 (MGI:MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:MGI:5697986 NCBI chr 1:265,772,729...265,798,442
Ensembl chr 1:265,785,409...265,798,167
JBrowse link
G Lhx1 LIM homeobox 1 ISO MGI:MGI:2656539|MGI:MGI:5698524 (MGI:MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:MGI:5697986 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Nodal nodal growth differentiation factor ISO (PMID:21741376)
MGI:MGI:2158732 (MGI:MGI:2155575|PMID:11311163), (MGI:MGI:2677178|PMID:14511481)
RGD PMID:11311163, PMID:14511481, PMID:21741376 MGI:MGI:2155575, MGI:MGI:2677178 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Otx2 orthodenticle homeobox 2 ISO MGI:MGI:2656539|MGI:MGI:5698524 (MGI:MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:MGI:5697986 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Smad4 SMAD family member 4 ISO MGI:MGI:2656539|MGI:MGI:5698524 (MGI:MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:MGI:5697986 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Ssbp3 single stranded DNA binding protein 3 ISO MGI:MGI:2656539|MGI:MGI:5698524 (MGI:MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:MGI:5697986 NCBI chr 5:126,511,339...126,649,830
Ensembl chr 5:126,511,350...126,648,661
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 ISO
ISS
(MGI:MGI:5784967|PMID:24733888)
GO_REF:0000024
RGD
UniProt
PMID:24733888 GO_REF:0000024, MGI:MGI:5784967 NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074
JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain IEA
ISO
GO_REF:0000107
(PMID:23154389)
Ensembl
RGD
PMID:23154389 GO_REF:0000107 NCBI chr 3:6,430,180...6,581,010
Ensembl chr 3:6,430,201...6,578,882
JBrowse link
G Col5a2 collagen type V alpha 2 chain ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 9:52,091,088...52,238,735
Ensembl chr 9:52,092,511...52,238,564
JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior bHLH transcription factor 1 ISO (MGI:MGI:4441249|PMID:18593560) RGD PMID:18593560 MGI:MGI:4441249 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone ISO (PMID:23595991) RGD PMID:23595991 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (PMID:20559569) RGD PMID:20559569 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
JBrowse link
regulation of transcription from RNA polymerase II promoter involved in definitive endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox17 SRY-box transcription factor 17 ISO (MGI:MGI:4946573|PMID:21305474) RGD PMID:21305474 MGI:MGI:4946573 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    developmental process 6813
      anatomical structure development 6256
        tissue development 2094
          endoderm development 87
            endoderm formation + 56
            mesendoderm development + 11
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.