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ONTOLOGY REPORT - ANNOTATIONS


Term:mesoderm development
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Accession:GO:0007498 term browser browse the term
Definition:The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue.


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mesoderm development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 ISO MGI:1931734|MGI:3696672 (MGI:3695845|PMID:17117439) RGD PMID:17117439 MGI:3695845 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Acvr2a activin A receptor type 2A IEA
ISO
GO_REF:0000107
MGI:1857709|MGI:2179547 (MGI:1344152|PMID:10452853)
Ensembl
RGD
PMID:10452853 GO_REF:0000107, MGI:1344152 NCBI chr 3:32,947,901...33,034,598
Ensembl chr 3:32,947,378...33,034,282
JBrowse link
G Acvr2b activin A receptor type 2B IEA
ISO
GO_REF:0000107
MGI:1857709|MGI:2179547 (MGI:1344152|PMID:10452853)
Ensembl
RGD
PMID:10452853 GO_REF:0000107, MGI:1344152 NCBI chr 8:128,087,308...128,126,776
Ensembl chr 8:128,087,345...128,118,746
JBrowse link
G Bmp4 bone morphogenetic protein 4 NAS RGD PMID:12552124 RGD:629544 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Ctdnep1 CTD nuclear envelope phosphatase 1 ISO MGI:5510826 (MGI:5505383|PMID:23469192) RGD PMID:23469192 MGI:5505383 NCBI chr10:56,590,822...56,600,235
Ensembl chr10:56,591,292...56,600,232
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:3822451 (MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:3821807 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
JBrowse link
G Ets2 ETS proto-oncogene 2, transcription factor ISO MGI:1891557 (MGI:5546318|PMID:23552073) RGD PMID:23552073 MGI:5546318 NCBI chr11:36,075,709...36,092,495
Ensembl chr11:36,075,709...36,092,495
JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO MGI:1888710 (MGI:1888607|PMID:10926768) RGD PMID:10926768 MGI:1888607 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
G Foxf1 forkhead box F1 ISO MGI:1197522|MGI:1929432 (MGI:1928688|PMID:11124112), (MGI:2135612|PMID:11493558) RGD PMID:11124112, PMID:11493558 MGI:1928688, MGI:2135612 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
JBrowse link
G Gdf1 growth differentiation factor 1 ISO MGI:95686 (MGI:3763867|PMID:17936261) RGD PMID:17936261 MGI:3763867 NCBI chr16:20,845,580...20,860,789
Ensembl chr16:20,845,576...20,860,767
JBrowse link
G Gdf3 growth differentiation factor 3 ISO MGI:3612535|MGI:95683 (MGI:3611720|PMID:16368929), (MGI:3763867|PMID:17936261) RGD PMID:16368929, PMID:17936261 MGI:3611720, MGI:3763867 NCBI chr 4:155,417,667...155,422,014
Ensembl chr 4:155,417,004...155,421,998
JBrowse link
G Irx3 iroquois homeobox 3 ISO MGI:1347470 (MGI:1928688|PMID:11124112) RGD PMID:11124112 MGI:1928688 NCBI chr19:15,838,714...15,842,135
Ensembl chr19:15,838,714...15,840,990
JBrowse link
G Lhx2 LIM homeobox 2 ISO MGI:1890208 (MGI:1889796|PMID:9247336) RGD PMID:9247336 MGI:1889796 NCBI chr 3:22,628,674...22,658,447
Ensembl chr 3:22,640,545...22,658,446
JBrowse link
G Ovol1 ovo like transcriptional repressor 1 ISO MGI:1926599 (MGI:1312960|PMID:9808631) RGD PMID:9808631 MGI:1312960 NCBI chr 1:220,927,309...220,938,814
Ensembl chr 1:220,925,605...220,938,814
JBrowse link
G Palb2 partner and localizer of BRCA2 ISO MGI:3801303 (MGI:4459579|PMID:20484223) RGD PMID:20484223 MGI:4459579 NCBI chr 1:192,064,586...192,088,547
Ensembl chr 1:192,064,589...192,088,520
JBrowse link
G Pou4f1 POU class 4 homeobox 1 IEA
ISO
GO_REF:0000107
MGI:2387665 (MGI:4367920|PMID:19877281)
Ensembl
RGD
PMID:19877281 GO_REF:0000107, MGI:4367920 NCBI chr15:88,618,255...88,622,712
Ensembl chr15:88,620,470...88,622,413
JBrowse link
G Ppp2ca protein phosphatase 2 catalytic subunit alpha ISO (MGI:1306879|PMID:9770493) RGD PMID:9770493 MGI:1306879 NCBI chr10:37,534,449...37,554,861
Ensembl chr10:37,535,871...37,554,664
JBrowse link
G Smad4 SMAD family member 4 IEA
ISO
GO_REF:0000107
MGI:1858049 (MGI:1195384|PMID:9420335)
Ensembl
RGD
PMID:9420335 GO_REF:0000107, MGI:1195384 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Snai1 snail family transcriptional repressor 1 ISO MGI:2183156 (MGI:3654743|PMID:16801545) RGD PMID:16801545 MGI:3654743 NCBI chr 3:164,274,710...164,279,199
Ensembl chr 3:164,274,710...164,279,378
JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO
GO_REF:0000024
MGI:2179190 (MGI:2138050|PMID:11242110)
UniProt
RGD
PMID:11242110 GO_REF:0000024, MGI:2138050 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tbxt T-box transcription factor T ISO MGI:1857760 (MGI:64493|PMID:8293872) RGD PMID:8293872 MGI:64493 NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832
JBrowse link
G Vegfa vascular endothelial growth factor A ISO MGI:2383985 (MGI:2681060|PMID:12890722) RGD PMID:12890722 MGI:2681060 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:1857489 (MGI:64780|PMID:8299937) RGD PMID:8299937 MGI:64780 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
axial mesoderm development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 ISO MGI:1857546 (MGI:894149|PMID:9230313) RGD PMID:9230313 MGI:894149
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:3578147 (MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:3577662 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
JBrowse link
G Foxh1 forkhead box H1 ISO MGI:2179442 (MGI:1934970|PMID:11358869) RGD PMID:11358869 MGI:1934970 NCBI chr 7:117,730,307...117,733,076
Ensembl chr 7:117,730,307...117,732,387
JBrowse link
G Nog noggin IEA
ISO
GO_REF:0000107
MGI:1862000 (MGI:3640733|PMID:16712836)
Ensembl
RGD
PMID:16712836 GO_REF:0000107, MGI:3640733 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Poglut1 protein O-glucosyltransferase 1 IEA
ISO
GO_REF:0000107
MGI:2137554 (MGI:3577662|PMID:15755804)
Ensembl
RGD
PMID:15755804 GO_REF:0000107, MGI:3577662 NCBI chr11:64,761,493...64,788,210
Ensembl chr11:64,761,146...64,788,208
JBrowse link
G Rpl38 ribosomal protein L38 ISO MGI:1859977|MGI:1861228|MGI:2447994 (MGI:5014009|PMID:21529712) RGD PMID:21529712 MGI:5014009 NCBI chr10:103,198,424...103,202,059
Ensembl chr 2:199,479,007...199,479,309
JBrowse link
axial mesoderm formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 ISO MGI:1857546 (MGI:894149|PMID:9230313) RGD PMID:9230313 MGI:894149
G Epha2 Eph receptor A2 ISO MGI:2448472 (MGI:1934524|PMID:11287184) RGD PMID:11287184 MGI:1934524 NCBI chr 5:159,845,773...159,874,203
Ensembl chr 5:159,845,774...159,874,206
JBrowse link
axial mesoderm morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:3578147 (MGI:3714667|PMID:17507402) RGD PMID:17507402 MGI:3714667 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
JBrowse link
G Tcf7l1 transcription factor 7 like 1 ISO MGI:3044616 (MGI:3043490|PMID:14668413) RGD PMID:14668413 MGI:3043490 NCBI chr 4:100,492,796...100,660,401
Ensembl chr 4:100,491,798...100,660,140
JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor ISO (MGI:2677178|PMID:14511481) RGD PMID:14511481 MGI:2677178 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
BMP signaling pathway involved in mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Etv2 ETS variant transcription factor 2 ISO (MGI:4415813|PMID:18462699) RGD PMID:18462699 MGI:4415813 NCBI chr 1:89,091,239...89,094,570
Ensembl chr 1:89,091,239...89,094,530
JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 ISO MGI:2150346 (MGI:1341493|PMID:10421635) RGD PMID:10421635 MGI:1341493 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
determination of left/right asymmetry in lateral mesoderm term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dand5 DAN domain BMP antagonist family member 5 ISO (MGI:3055649|PMID:15466485) RGD PMID:15466485 MGI:3055649 NCBI chr19:25,929,704...25,937,852
Ensembl chr19:25,930,601...25,936,026
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
GO_REF:0000107
(MGI:5142377|PMID:11517919)
Ensembl
RGD
PMID:11517919 GO_REF:0000107, MGI:5142377 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smo smoothened, frizzled class receptor IEA
ISO
ISS
GO_REF:0000107
(MGI:5142377|PMID:11517919)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:11517919 GO_REF:0000024, GO_REF:0000107, MGI:5142377 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
digestive tract mesoderm development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule IDA RGD PMID:9368764 RGD:2306312 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
ectoderm and mesoderm interaction term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tp63 tumor protein p63 ISO MGI:1934269|MGI:1934580 (MGI:1335634|PMID:10227293), (MGI:1335635|PMID:10227294) RGD PMID:10227293, PMID:10227294 MGI:1335634, MGI:1335635 NCBI chr11:78,234,853...78,456,559
Ensembl chr11:78,234,800...78,456,501
JBrowse link
gonadal mesoderm development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amh anti-Mullerian hormone IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:11,775,155...11,777,503
Ensembl chr 7:11,775,155...11,777,503
JBrowse link
G Tspy1 testis specific protein, Y-linked 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  Y:151,941...156,587
Ensembl chr  Y:151,937...155,263
JBrowse link
hemangioblast cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor ISO MGI:1857254 (MGI:3580923|PMID:15677567), (MGI:3807430|PMID:18550854), (MGI:3838687|PMID:19182774) RGD PMID:15677567, PMID:18550854, PMID:19182774 MGI:3580923, MGI:3807430, MGI:3838687 NCBI chr 5:133,864,401...133,878,604
Ensembl chr 5:133,864,798...133,878,830
JBrowse link
intermediate mesoderm development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 ISO MGI:3613748 (MGI:3613210|PMID:16223478) RGD PMID:16223478 MGI:3613210 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
intermediate mesodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:10021330)
Ensembl
UniProt
RGD
PMID:10021330 GO_REF:0000024, GO_REF:0000107 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
lateral mesoderm development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:2158343 (MGI:3702797|PMID:16943278) RGD PMID:16943278 MGI:3702797 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Fendrr FOXF1 adjacent non-coding developmental regulatory RNA ISO MGI:5470087 (MGI:5462100|PMID:23369715) RGD PMID:23369715 MGI:5462100 NCBI chr19:52,991,283...53,010,509 JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 ISO (PMID:10393122) RGD PMID:10393122 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
G Tead1 TEA domain transcription factor 1 ISO MGI:103262|MGI:104904 (MGI:3773640|PMID:18332127) RGD PMID:18332127 MGI:3773640 NCBI chr 1:177,495,500...177,714,795
Ensembl chr 1:177,495,782...177,707,061
JBrowse link
G Tead2 TEA domain transcription factor 2 ISO MGI:101876|MGI:103262 (MGI:3773640|PMID:18332127) RGD PMID:18332127 MGI:3773640 NCBI chr 1:101,213,782...101,230,483
Ensembl chr 1:101,213,788...101,230,477
JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO MGI:101876|MGI:104904 (MGI:3773640|PMID:18332127) RGD PMID:18332127 MGI:3773640 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
lateral mesodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 ISO MGI:1929432 (MGI:1928688|PMID:11124112) RGD PMID:11124112 MGI:1928688 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
JBrowse link
mesendoderm development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:2158342 (MGI:3051920|PMID:15136140) RGD PMID:15136140 MGI:3051920 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Eomes eomesodermin ISO MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:5697986 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Foxa2 forkhead box A2 ISO MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:5697986 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Ldb1 LIM domain binding 1 ISO MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:5697986 NCBI chr 1:265,772,729...265,798,442
Ensembl chr 1:265,785,409...265,798,167
JBrowse link
G Lhx1 LIM homeobox 1 ISO MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:5697986 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Nodal nodal growth differentiation factor ISO (PMID:21741376)
MGI:2158732 (MGI:2155575|PMID:11311163), (MGI:2677178|PMID:14511481)
RGD PMID:11311163, PMID:14511481, PMID:21741376 MGI:2155575, MGI:2677178 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Otx2 orthodenticle homeobox 2 ISO MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:5697986 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Smad4 SMAD family member 4 ISO MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:5697986 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Ssbp3 single stranded DNA binding protein 3 ISO MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:5697986 NCBI chr 5:126,511,339...126,649,830
Ensembl chr 5:126,511,350...126,648,661
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 ISS
ISO
GO_REF:0000024
(MGI:5784967|PMID:24733888)
UniProt
RGD
PMID:24733888 GO_REF:0000024, MGI:5784967 NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074
JBrowse link
mesoderm formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 IEA
ISO
GO_REF:0000107
MGI:1931734|MGI:3696672 (MGI:1345529|PMID:10479450), (MGI:3695845|PMID:17117439)
Ensembl
RGD
PMID:10479450, PMID:17117439 GO_REF:0000107, MGI:1345529, MGI:3695845 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Armc5 armadillo repeat containing 5 ISO MGI:6157645 (MGI:5913685|PMID:28911199) RGD PMID:28911199 MGI:5913685 NCBI chr 1:199,655,069...199,662,419
Ensembl chr 1:199,655,660...199,662,427
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO (MGI:4415813|PMID:18462699), (MGI:70235|PMID:7799920) RGD PMID:7799920, PMID:18462699 MGI:4415813, MGI:70235 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO MGI:2137520 (MGI:3578079|PMID:15843411) RGD PMID:15843411 MGI:3578079 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:2158342 (MGI:3722226|PMID:17699604) RGD PMID:17699604 MGI:3722226 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO MGI:2158503 (MGI:1855789|PMID:10772805) RGD PMID:10772805 MGI:1855789 NCBI chr 9:66,568,074...66,683,019
Ensembl chr 9:66,568,074...66,676,494
JBrowse link
G Chrd chordin IEA
ISO
GO_REF:0000107
MGI:2157350 (MGI:2662951|PMID:12810603)
Ensembl
RGD
PMID:12810603 GO_REF:0000107, MGI:2662951 NCBI chr11:83,858,503...83,867,543
Ensembl chr11:83,858,503...83,867,203
JBrowse link
G Crb2 crumbs cell polarity complex component 2 ISS
ISO
GO_REF:0000024
(MGI:5296388|PMID:22072575), (MGI:5823085|PMID:27870829)
UniProt
RGD
PMID:22072575, PMID:27870829 GO_REF:0000024, MGI:5296388, MGI:5823085 NCBI chr 3:22,037,812...22,061,247
Ensembl chr 3:22,038,357...22,058,871
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (MGI:4415813|PMID:18462699) RGD PMID:18462699 MGI:4415813 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
JBrowse link
G Ecsit ECSIT signaling integrator ISO MGI:2683025 (MGI:2682456|PMID:14633973) RGD PMID:14633973 MGI:2682456 NCBI chr 8:23,085,598...23,099,064
Ensembl chr 8:23,085,590...23,099,042
JBrowse link
G Eomes eomesodermin ISO
IBA
MGI:2182814 (MGI:1354065|PMID:10716450)
PMID:21873635
RGD PMID:10716450, PMID:21873635 MGI:1354065, RGD:13792537 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Etv2 ETS variant transcription factor 2 ISO (MGI:4415813|PMID:18462699) RGD PMID:18462699 MGI:4415813 NCBI chr 1:89,091,239...89,094,570
Ensembl chr 1:89,091,239...89,094,530
JBrowse link
G Ext2 exostosin glycosyltransferase 2 ISO MGI:3608690 (MGI:3608483|PMID:16236767) RGD PMID:16236767 MGI:3608483 NCBI chr 3:82,602,784...82,734,557
Ensembl chr 3:82,602,785...82,734,533
JBrowse link
G Gpi glucose-6-phosphate isomerase ISO MGI:2177275 (MGI:84014|PMID:8922529) RGD PMID:8922529 MGI:84014 NCBI chr 1:90,063,411...90,091,287
Ensembl chr 1:90,063,411...90,091,287
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 ISO MGI:2153824 (MGI:1197801|PMID:9500550) RGD PMID:9500550 MGI:1197801 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Inhba inhibin subunit beta A ISO (MGI:70235|PMID:7799920) RGD PMID:7799920 MGI:70235 NCBI chr17:51,894,869...51,919,998
Ensembl chr17:51,898,217...51,912,496
JBrowse link
G Macf1 microtubule-actin crosslinking factor 1 ISO MGI:3652899 (MGI:3640889|PMID:16815997) RGD PMID:16815997 MGI:3640889 NCBI chr 5:141,039,455...141,363,524
Ensembl chr 5:141,039,468...141,363,524
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:141,550,633...141,553,239
Ensembl chr 1:141,550,633...141,553,230
JBrowse link
G Msgn1 mesogenin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:36,876,165...36,876,805
Ensembl chr 6:36,876,165...36,876,805
JBrowse link
G Nf2 neurofibromin 2 IEA
ISO
GO_REF:0000107
MGI:1857941 (MGI:707944|PMID:9171370)
Ensembl
RGD
PMID:9171370 GO_REF:0000107, MGI:707944 NCBI chr14:84,996,905...85,088,547
Ensembl chr14:84,996,905...85,088,523
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Nog noggin IEA
ISO
GO_REF:0000107
(MGI:4415813|PMID:18462699)
Ensembl
RGD
PMID:18462699 GO_REF:0000107, MGI:4415813 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 ISO MGI:3043761 (MGI:3042044|PMID:13129926) RGD PMID:13129926 MGI:3042044 NCBI chr 5:63,781,801...63,822,890
Ensembl chr 5:63,781,801...63,821,637
JBrowse link
G Pofut2 protein O-fucosyltransferase 2 ISO MGI:3604508|MGI:4127173 (MGI:4838381|PMID:20637190) RGD PMID:20637190 MGI:4838381 NCBI chr20:12,117,811...12,128,747
Ensembl chr20:12,117,811...12,128,747
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha IEA
ISO
GO_REF:0000107
MGI:97592 (MGI:2183097|PMID:12004056)
Ensembl
RGD
PMID:12004056 GO_REF:0000107, MGI:2183097 NCBI chr19:25,095,089...25,118,869
Ensembl chr19:25,095,089...25,118,860
JBrowse link
G Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha ISO MGI:2183602 (MGI:2183097|PMID:12004056) RGD PMID:12004056 MGI:2183097 NCBI chr10:97,940,705...97,959,199
Ensembl chr10:97,940,705...97,957,336
JBrowse link
G Scx scleraxis bHLH transcription factor ISO (MGI:1343990|PMID:10477299) RGD PMID:10477299 MGI:1343990 NCBI chr 7:117,519,075...117,521,093
Ensembl chr 7:117,519,075...117,521,093
JBrowse link
G Smad2 SMAD family member 2 ISS
ISO
GO_REF:0000024
MGI:1857691 (MGI:3039049|PMID:15084457)
UniProt
RGD
PMID:15084457 GO_REF:0000024, MGI:3039049 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Smad3 SMAD family member 3 ISO MGI:1857696 (MGI:3039049|PMID:15084457) RGD PMID:15084457 MGI:3039049 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Snai1 snail family transcriptional repressor 1 ISO (MGI:2153695|PMID:11689706) RGD PMID:11689706 MGI:2153695 NCBI chr 3:164,274,710...164,279,199
Ensembl chr 3:164,274,710...164,279,378
JBrowse link
G Srf serum response factor ISO MGI:2158696 (MGI:1312998|PMID:9799237), (MGI:1927031|PMID:11060034) RGD PMID:9799237, PMID:11060034 MGI:1312998, MGI:1927031 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Tbx19 T-box transcription factor 19 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:83,403,263...83,426,305
Ensembl chr13:83,403,264...83,425,641
JBrowse link
G Tbx6 T-box transcription factor 6 ISO MGI:2447721|MGI:3578143 (MGI:2447720|PMID:9490412), (MGI:3577662|PMID:15755804) RGD PMID:9490412, PMID:15755804 MGI:2447720, MGI:3577662 NCBI chr 1:198,214,797...198,218,706
Ensembl chr 1:198,214,797...198,218,706
JBrowse link
G Tbxt T-box transcription factor T IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832
JBrowse link
G Tlx2 T-cell leukemia homeobox 2 ISO MGI:1857514 (MGI:1267265|PMID:9550720) RGD PMID:9550720 MGI:1267265 NCBI chr 4:114,766,401...114,768,243
Ensembl chr 4:114,766,714...114,768,029
Ensembl chr 4:114,766,714...114,768,029
JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 ISO MGI:103302 (MGI:3578079|PMID:15843411) RGD PMID:15843411 MGI:3578079 NCBI chr 9:113,699,151...113,732,601
Ensembl chr 9:113,699,170...113,732,622
JBrowse link
G Txnrd1 thioredoxin reductase 1 IEA
ISO
GO_REF:0000107
MGI:3722092 (MGI:3721365|PMID:17697936)
Ensembl
RGD
PMID:17697936 GO_REF:0000107, MGI:3721365 NCBI chr 7:26,946,124...26,984,400
Ensembl chr 7:26,946,125...26,984,400
JBrowse link
G Wls Wnt ligand secretion mediator ISO (MGI:4397730|PMID:19841259) RGD PMID:19841259 MGI:4397730 NCBI chr 2:266,315,036...266,431,220
Ensembl chr 2:266,315,036...266,432,558
JBrowse link
G Wnt3 Wnt family member 3 ISO MGI:2178826 (MGI:1341483|PMID:10431240) RGD PMID:10431240 MGI:1341483 NCBI chr10:91,830,709...91,874,907
Ensembl chr10:91,830,654...91,874,793
JBrowse link
mesoderm migration involved in gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:3822451 (MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:3821807 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
JBrowse link
G LOC100912649 uncharacterized LOC100912649 ISS GO_REF:0000024 UniProt GO_REF:0000024
G Tbxt T-box transcription factor T ISO MGI:1857760 (MGI:71468|PMID:7720590) RGD PMID:7720590 MGI:71468 NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832
JBrowse link
mesoderm morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO (MGI:4431136|PMID:20133625) RGD PMID:20133625 MGI:4431136 NCBI chr 8:118,802,478...118,888,224
Ensembl chr 8:118,803,075...118,888,224
JBrowse link
G Tbx3 T-box transcription factor 3 ISO
ISS
(PMID:9207801)
GO_REF:0000024
RGD
UniProt
PMID:9207801 GO_REF:0000024 NCBI chr12:42,479,518...42,494,588
Ensembl chr12:42,480,560...42,492,526
JBrowse link
mesodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 ISO (MGI:70235|PMID:7799920) RGD PMID:7799920 MGI:70235 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IEP RGD PMID:7803853 RGD:632663 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO
ISS
(PMID:17624332)
GO_REF:0000024
RGD
UniProt
PMID:17624332 GO_REF:0000024 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G Inhba inhibin subunit beta A ISO (MGI:70235|PMID:7799920) RGD PMID:7799920 MGI:70235 NCBI chr17:51,894,869...51,919,998
Ensembl chr17:51,898,217...51,912,496
JBrowse link
G Itga2 integrin subunit alpha 2 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 2:46,996,904...47,097,011
Ensembl chr 2:47,000,323...47,096,961
JBrowse link
G Itga3 integrin subunit alpha 3 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr10:82,855,841...82,887,755
Ensembl chr10:82,855,613...82,887,497
JBrowse link
G Itga8 integrin subunit alpha 8 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr17:79,321,893...79,676,927
Ensembl chr17:79,321,900...79,676,499
JBrowse link
G Itgb1 integrin subunit beta 1 IEA
ISO
GO_REF:0000107
(PMID:23154389)
Ensembl
RGD
PMID:23154389 GO_REF:0000107 NCBI chr19:61,677,512...61,725,537
Ensembl chr19:61,677,542...61,725,535
JBrowse link
G Itgb3 integrin subunit beta 3 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr10:92,667,869...92,783,413
Ensembl chr10:92,667,869...92,783,410
JBrowse link
G Itgb4 integrin subunit beta 4 IEA
ISO
GO_REF:0000107
(PMID:23154389)
Ensembl
RGD
PMID:23154389 GO_REF:0000107 NCBI chr10:104,524,000...104,560,180
Ensembl chr10:104,523,996...104,561,078
JBrowse link
G Kdm6a lysine demethylase 6A ISO MGI:5448754|MGI:5448825 (MGI:5448135|PMID:22949634) RGD PMID:22949634 MGI:5448135 NCBI chr  X:4,805,493...4,945,788
Ensembl chr  X:4,806,277...4,945,944
JBrowse link
G Kdm6b lysine demethylase 6B ISO (MGI:5574281|PMID:23856522) RGD PMID:23856522 MGI:5574281 NCBI chr10:56,000,494...56,009,582
Ensembl chr10:56,001,799...56,008,885
JBrowse link
mesodermal cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nanog Nanog homeobox ISO MGI:109452 (MGI:3654744|PMID:16801560) RGD PMID:16801560 MGI:3654744 NCBI chr 4:155,531,906...155,539,268
Ensembl chr 4:155,531,906...155,539,268
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO (MGI:1355046|PMID:10742100) RGD PMID:10742100 MGI:1355046 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Smad1 SMAD family member 1 IEA
ISO
GO_REF:0000107
MGI:1919200 (MGI:3654744|PMID:16801560)
Ensembl
RGD
PMID:16801560 GO_REF:0000107, MGI:3654744 NCBI chr19:32,182,942...32,248,694
Ensembl chr19:32,188,267...32,248,684
JBrowse link
mesodermal cell fate determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IEA
ISO
GO_REF:0000107
MGI:1857137 (MGI:76261|PMID:7657163)
Ensembl
RGD
PMID:7657163 GO_REF:0000107, MGI:76261 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO (MGI:3768605|PMID:17785448) RGD PMID:17785448 MGI:3768605 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
JBrowse link
G Hoxa11 homeobox A11 ISO (MGI:3768605|PMID:17785448) RGD PMID:17785448 MGI:3768605 NCBI chr 4:82,296,888...82,301,419
Ensembl chr 4:82,298,152...82,300,503
Ensembl chr 4:82,298,152...82,300,503
JBrowse link
G Pax2 paired box 2 ISS
ISO
GO_REF:0000024
(MGI:3768605|PMID:17785448)
UniProt
RGD
PMID:17785448 GO_REF:0000024, MGI:3768605 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Six2 SIX homeobox 2 ISO (MGI:3768605|PMID:17785448) RGD PMID:17785448 MGI:3768605 NCBI chr 6:8,952,572...8,955,893
Ensembl chr 6:8,952,572...8,956,276
JBrowse link
negative regulation of mesoderm development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cer1 cerberus 1, DAN family BMP antagonist ISO (PMID:9660951)
(MGI:1858315|PMID:10748465)
RGD PMID:9660951, PMID:10748465 MGI:1858315 NCBI chr 5:101,003,019...101,006,375
Ensembl chr 5:101,003,023...101,006,375
JBrowse link
G Rps6ka6 ribosomal protein S6 kinase A6 ISO (MGI:3041939|PMID:15121846) RGD PMID:15121846 MGI:3041939 NCBI chr  X:82,641,679...82,743,771
Ensembl chr  X:82,641,687...82,743,753
JBrowse link
G Sall1 spalt-like transcription factor 1 ISO (MGI:4946171|PMID:21062744) RGD PMID:21062744 MGI:4946171 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039
JBrowse link
G Tp63 tumor protein p63 ISO MGI:1934269 (MGI:5433834|PMID:21127502) RGD PMID:21127502 MGI:5433834 NCBI chr11:78,234,853...78,456,559
Ensembl chr11:78,234,800...78,456,501
JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (PMID:20559569) RGD PMID:20559569 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 ISO (MGI:4441249|PMID:18593560) RGD PMID:18593560 MGI:4441249 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:98956 (MGI:3711603|PMID:17462603) RGD PMID:17462603 MGI:3711603 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
negative regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cer1 cerberus 1, DAN family BMP antagonist IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:101,003,019...101,006,375
Ensembl chr 5:101,003,023...101,006,375
JBrowse link
G Dand5 DAN domain BMP antagonist family member 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:25,929,704...25,937,852
Ensembl chr19:25,930,601...25,936,026
JBrowse link
nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO (MGI:3054669|PMID:15475956) RGD PMID:15475956 MGI:3054669 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Nodal nodal growth differentiation factor ISO (MGI:5315339|PMID:17507406) RGD PMID:17507406 MGI:5315339 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
paraxial mesoderm development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:2158343|MGI:95522 (MGI:3702797|PMID:16943278) RGD PMID:16943278 MGI:3702797 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Dll3 delta like canonical Notch ligand 3 IEA
ISO
GO_REF:0000107
MGI:1857008 (MGI:3620337|PMID:15170697)
Ensembl
RGD
PMID:15170697 GO_REF:0000107, MGI:3620337 NCBI chr 1:85,485,875...85,493,683
Ensembl chr 1:85,485,289...85,493,685
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:3578147 (MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:3577662 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 IEA
ISO
GO_REF:0000107
MGI:1338938 (MGI:3702797|PMID:16943278)
Ensembl
RGD
PMID:16943278 GO_REF:0000107, MGI:3702797 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
JBrowse link
G Nckap1 NCK-associated protein 1 ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
JBrowse link
G Nup133 nucleoporin 133 ISO MGI:3578539 (MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:3577662 NCBI chr19:56,681,965...56,731,404
Ensembl chr19:56,681,979...56,731,372
JBrowse link
G Poglut1 protein O-glucosyltransferase 1 IEA
ISO
GO_REF:0000107
MGI:2137554 (MGI:1267118|PMID:9636176), (MGI:3577662|PMID:15755804)
Ensembl
RGD
PMID:9636176, PMID:15755804 GO_REF:0000107, MGI:1267118, MGI:3577662 NCBI chr11:64,761,493...64,788,210
Ensembl chr11:64,761,146...64,788,208
JBrowse link
G Tcf15 transcription factor 15 ISO MGI:1929775 (MGI:84545|PMID:8955271) RGD PMID:8955271 MGI:84545 NCBI chr 3:147,643,250...147,649,511
Ensembl chr 3:147,643,250...147,649,504
JBrowse link
G Tead1 TEA domain transcription factor 1 ISO MGI:103262|MGI:104904 (MGI:3773640|PMID:18332127) RGD PMID:18332127 MGI:3773640 NCBI chr 1:177,495,500...177,714,795
Ensembl chr 1:177,495,782...177,707,061
JBrowse link
G Tead2 TEA domain transcription factor 2 ISO MGI:101876|MGI:103262 (MGI:3773640|PMID:18332127) RGD PMID:18332127 MGI:3773640 NCBI chr 1:101,213,782...101,230,483
Ensembl chr 1:101,213,788...101,230,477
JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO MGI:101876|MGI:104904 (MGI:3773640|PMID:18332127) RGD PMID:18332127 MGI:3773640 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
paraxial mesoderm formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exoc4 exocyst complex component 4 IEA
ISO
GO_REF:0000107
MGI:4975171 (MGI:1195048|PMID:9441674)
Ensembl
RGD
PMID:9441674 GO_REF:0000107, MGI:1195048 NCBI chr 4:60,549,128...61,358,305
Ensembl chr 4:60,549,197...61,355,994
JBrowse link
G Foxc1 forkhead box C1 ISO MGI:1347481 (MGI:2150572|PMID:11562355), (MGI:3047050|PMID:15196959) RGD PMID:11562355, PMID:15196959 MGI:2150572, MGI:3047050 NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
JBrowse link
G Foxc2 forkhead box C2 ISO MGI:1347466 (MGI:2150572|PMID:11562355) RGD PMID:11562355 MGI:2150572 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Hnf1a HNF1 homeobox A ISO MGI:96770 (MGI:1334099|PMID:10090727) RGD PMID:10090727 MGI:1334099 NCBI chr12:47,407,811...47,433,342
Ensembl chr12:47,407,811...47,433,342
JBrowse link
G Htt huntingtin ISO MGI:1857180 (MGI:3609520|PMID:16109169) RGD PMID:16109169 MGI:3609520 NCBI chr14:81,105,139...81,254,637
Ensembl chr14:81,105,139...81,254,637
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 IEA
ISO
GO_REF:0000107
MGI:98504 (MGI:1334099|PMID:10090727)
Ensembl
RGD
PMID:10090727 GO_REF:0000107, MGI:1334099 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
G Wnt11 Wnt family member 11 ISO MGI:98958 (MGI:5634837|PMID:25813538) RGD PMID:25813538 MGI:5634837 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
JBrowse link
G Wnt5a Wnt family member 5A IEA
ISO
GO_REF:0000107
MGI:101948 (MGI:5634837|PMID:25813538)
Ensembl
RGD
PMID:25813538 GO_REF:0000107, MGI:5634837 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
paraxial mesoderm morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
JBrowse link
G Smad2 SMAD family member 2 ISS
ISO
GO_REF:0000024
MGI:1857691 (MGI:3039049|PMID:15084457)
UniProt
RGD
PMID:15084457 GO_REF:0000024, MGI:3039049 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Smad3 SMAD family member 3 ISO MGI:1857696 (MGI:3039049|PMID:15084457) RGD PMID:15084457 MGI:3039049 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
paraxial mesoderm structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:2158343 (MGI:3702797|PMID:16943278) RGD PMID:16943278 MGI:3702797 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc2 forkhead box C2 ISO MGI:1857865 (MGI:86990|PMID:9106663) RGD PMID:9106663 MGI:86990 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:1857489 (MGI:86727|PMID:9126297) RGD PMID:9126297 MGI:86727 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
positive regulation of mesoderm development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Etv2 ETS variant transcription factor 2 ISO (MGI:4415813|PMID:18462699) RGD PMID:18462699 MGI:4415813 NCBI chr 1:89,091,239...89,094,570
Ensembl chr 1:89,091,239...89,094,530
JBrowse link
G Mixl1 Mix paired-like homeobox 1 ISO (MGI:3773385|PMID:16403910), (MGI:5448529|PMID:19711456) RGD PMID:16403910, PMID:19711456 MGI:3773385, MGI:5448529 NCBI chr13:97,278,258...97,282,299
Ensembl chr13:98,973,041...98,975,426
Ensembl chr13:98,973,041...98,975,426
JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja1 gap junction protein, alpha 1 ISO (PMID:30599359) RGD PMID:30599359 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt3a Wnt family member 3A ISO (PMID:20559569) RGD PMID:20559569 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad2 SMAD family member 2 ISO (PMID:17239842) RGD PMID:17239842 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Zic2 Zic family member 2 ISO MGI:1862004 (MGI:5584215|PMID:24585447) RGD PMID:24585447 MGI:5584215 NCBI chr15:108,908,366...108,913,812
Ensembl chr15:108,908,607...108,912,737
JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:95522 (MGI:3702797|PMID:16943278) RGD PMID:16943278 MGI:3702797 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 IEA
ISO
GO_REF:0000107
MGI:1338938 (MGI:3702797|PMID:16943278)
Ensembl
RGD
PMID:16943278 GO_REF:0000107, MGI:3702797 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
JBrowse link
regulation of mesoderm development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pus7 pseudouridine synthase 7 ISO (PMID:29628141) RGD PMID:29628141 NCBI chr 4:7,889,727...7,931,357
Ensembl chr 4:7,889,869...7,930,706
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20030
    developmental process 6828
      anatomical structure development 6270
        tissue development 2099
          mesoderm development 126
            axial mesoderm development + 9
            digestive tract mesoderm development 1
            ectoderm and mesoderm interaction 1
            gonadal mesoderm development 2
            intermediate mesoderm development + 2
            lateral mesoderm development + 16
            mesectoderm development 0
            mesendoderm development + 11
            mesoderm morphogenesis + 79
            negative regulation of mesoderm development + 4
            paraxial mesoderm development + 22
            positive regulation of mesoderm development + 2
            regulation of mesoderm development + 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.