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ONTOLOGY REPORT - ANNOTATIONS


Term:mesoderm development
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Accession:GO:0007498 term browser browse the term
Definition:The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue.


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mesoderm development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acvr1 activin A receptor type 1 JBrowse link NW_004955449 15,587,958 15,706,432 RGD:9068941
G Acvr2a activin A receptor type 2A JBrowse link NW_004955440 13,849,926 13,931,374 RGD:9068941
G Acvr2b activin A receptor type 2B JBrowse link NW_004955427 25,438,652 25,467,360 RGD:9068941
G Ctdnep1 CTD nuclear envelope phosphatase 1 JBrowse link NW_004955467 9,660,088 9,666,878 RGD:9068941
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 JBrowse link NW_004955459 9,641,926 9,783,718 RGD:9068941
G Ets2 ETS proto-oncogene 2, transcription factor JBrowse link NW_004955407 37,747,152 37,764,170 RGD:9068941
G Ext1 exostosin glycosyltransferase 1 JBrowse link NW_004955417 23,798,044 24,067,759 RGD:9068941
G Foxf1 forkhead box F1 JBrowse link NW_004955541 1,341,715 1,345,397 RGD:9068941
G Gdf3 growth differentiation factor 3 JBrowse link NW_004955413 6,493,734 6,516,315 RGD:9068941
G Irx3 iroquois homeobox 3 JBrowse link NW_004955433 11,944,890 11,948,372 RGD:9068941
G Lhx2 LIM homeobox 2 JBrowse link NW_004955419 3,999,364 4,019,543 RGD:9068941
G Ovol1 ovo like transcriptional repressor 1 JBrowse link NW_004955422 19,524,420 19,528,938 RGD:9068941
G Palb2 partner and localizer of BRCA2 JBrowse link NW_004955493 2,149,053 2,175,482 RGD:9068941
G Pou4f1 POU class 4 homeobox 1 JBrowse link NW_004955404 28,812,762 28,818,024 RGD:9068941
G Ppp2ca protein phosphatase 2 catalytic subunit alpha JBrowse link NW_004955408 5,435,117 5,460,361 RGD:9068941
G Smad4 SMAD family member 4 JBrowse link NW_004955402 35,956,080 36,001,746 RGD:9068941
G Snai1 snail family transcriptional repressor 1 JBrowse link NW_004955445 8,232,084 8,237,893 RGD:9068941
G Tbx1 T-box transcription factor 1 JBrowse link NW_004955442 18,320,674 18,327,062 RGD:9068941
G Tbxt T-box transcription factor T JBrowse link NW_004955439 15,675,680 15,683,542 RGD:9068941
G Vegfa vascular endothelial growth factor A JBrowse link NW_004955437 9,527,445 9,541,908 RGD:9068941
G Wnt3a Wnt family member 3A JBrowse link NW_004955581 351,375 382,541 RGD:9068941
axial mesoderm development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Axin1 axin 1 JBrowse link NW_004955442 16,845,728 16,898,301 RGD:9068941
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 JBrowse link NW_004955459 9,641,926 9,783,718 RGD:9068941
G Foxh1 forkhead box H1 JBrowse link NW_004955454 3,094,015 3,096,060 RGD:9068941
G Nog noggin JBrowse link NW_004955451 6,192,368 6,193,766 RGD:9068941
G Poglut1 protein O-glucosyltransferase 1 JBrowse link NW_004955427 19,188,512 19,206,050 RGD:9068941
G Rpl38 ribosomal protein L38 JBrowse link NW_004955553 1,129,607 1,133,896 RGD:9068941
axial mesoderm formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Axin1 axin 1 JBrowse link NW_004955442 16,845,728 16,898,301 RGD:9068941
G Epha2 EPH receptor A2 JBrowse link NW_004955527 2,120,447 2,151,932 RGD:9068941
axial mesoderm morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 JBrowse link NW_004955459 9,641,926 9,783,718 RGD:9068941
G Tcf7l1 transcription factor 7 like 1 JBrowse link NW_004955424 2,139,576 2,286,183 RGD:9068941
axial mesodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nodal nodal growth differentiation factor JBrowse link NW_004955437 20,828,448 20,835,486 RGD:9068941
BMP signaling pathway involved in mesodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Etv2 ETS variant transcription factor 2 JBrowse link NW_004955468 4,857,023 4,859,926 RGD:9068941
cell migration involved in mesendoderm migration term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fgf8 fibroblast growth factor 8 JBrowse link NW_004955485 8,517,412 8,521,732 RGD:9068941
determination of left/right asymmetry in lateral mesoderm term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dand5 DAN domain BMP antagonist family member 5 JBrowse link NW_004955415 32,012,637 32,015,965 RGD:9068941
G Shh sonic hedgehog signaling molecule JBrowse link NW_004955491 8,647,133 8,657,381 RGD:9068941
G Smo smoothened, frizzled class receptor JBrowse link NW_004955479 9,963,377 9,991,670 RGD:9068941
digestive tract mesoderm development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Shh sonic hedgehog signaling molecule JBrowse link NW_004955491 8,647,133 8,657,381 RGD:9068941
ectoderm and mesoderm interaction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tp63 tumor protein p63 JBrowse link NW_004955420 18,178,639 18,384,786 RGD:9068941
hemangioblast cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor JBrowse link NW_004955464 11,304,611 11,317,420 RGD:9068941
intermediate mesoderm development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Osr1 odd-skipped related transcription factor 1 JBrowse link NW_004955469 1,954,470 1,961,344 RGD:9068941
intermediate mesodermal cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004955409 9,432,835 9,439,680 RGD:9068941
lateral mesoderm development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmpr1a bone morphogenetic protein receptor type 1A JBrowse link NW_004955510 5,812,571 5,936,312 RGD:9068941
G Tead1 TEA domain transcription factor 1 JBrowse link NW_004955414 28,166,562 28,341,275 RGD:9068941
G Tead2 TEA domain transcription factor 2 JBrowse link NW_004955559 1,450,706 1,465,947 RGD:9068941
G Yap1 Yes1 associated transcriptional regulator JBrowse link NW_004955412 5,423,866 5,533,728 RGD:9068941
lateral mesodermal cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Foxf1 forkhead box F1 JBrowse link NW_004955541 1,341,715 1,345,397 RGD:9068941
mesendoderm development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmpr1a bone morphogenetic protein receptor type 1A JBrowse link NW_004955510 5,812,571 5,936,312 RGD:9068941
G Nodal nodal growth differentiation factor JBrowse link NW_004955437 20,828,448 20,835,486 RGD:9068941
G Zfp36l1 ZFP36 ring finger protein like 1 JBrowse link NW_004955466 1,541,367 1,546,617 RGD:9068941
mesoderm formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acvr1 activin A receptor type 1 JBrowse link NW_004955449 15,587,958 15,706,432 RGD:9068941
G Armc5 armadillo repeat containing 5 JBrowse link NW_004955493 8,295,868 8,302,638 RGD:9068941
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004955409 9,432,835 9,439,680 RGD:9068941
G Bmp7 bone morphogenetic protein 7 JBrowse link NW_004955445 2,154,057 2,235,594 RGD:9068941
G Bmpr1a bone morphogenetic protein receptor type 1A JBrowse link NW_004955510 5,812,571 5,936,312 RGD:9068941
G Bmpr2 bone morphogenetic protein receptor type 2 JBrowse link NW_004955457 12,235,780 12,315,680 RGD:9068941
G Chrd chordin JBrowse link NW_004955420 23,111,690 23,120,038 RGD:9068941
G Crb2 crumbs cell polarity complex component 2 JBrowse link NW_004955419 4,604,883 4,626,675 RGD:9068941
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 JBrowse link NW_004955425 7,353,964 7,357,599 RGD:9068941
G Ecsit ECSIT signaling integrator JBrowse link NW_004955495 2,375,992 2,385,962 RGD:9068941
G Eomes eomesodermin JBrowse link NW_004955430 19,280,460 19,287,060 RGD:9068941
G Etv2 ETS variant transcription factor 2 JBrowse link NW_004955468 4,857,023 4,859,926 RGD:9068941
G Ext2 exostosin glycosyltransferase 2 JBrowse link NW_004955422 3,303,948 3,438,381 RGD:9068941
G Gpi glucose-6-phosphate isomerase JBrowse link NW_004955468 3,980,999 4,007,553 RGD:9068941
G Hand1 heart and neural crest derivatives expressed 1 JBrowse link NW_004955408 8,848,723 8,851,804 RGD:9068941
G Inhba inhibin subunit beta A JBrowse link NW_004955460 2,054,879 2,066,628 RGD:9068941
G Macf1 microtubule actin crosslinking factor 1 JBrowse link NW_004955452 16,684,784 17,025,940 RGD:9068941
G Nf2 neurofibromin 2 JBrowse link NW_004955455 3,862,804 3,950,669 RGD:9068941
G Nodal nodal growth differentiation factor JBrowse link NW_004955437 20,828,448 20,835,486 RGD:9068941
G Nog noggin JBrowse link NW_004955451 6,192,368 6,193,766 RGD:9068941
G Nr4a3 nuclear receptor subfamily 4 group A member 3 JBrowse link NW_004955419 25,779,368 25,817,445 RGD:9068941
G Pofut2 protein O-fucosyltransferase 2 JBrowse link NW_004955407 41,972,833 41,984,095 RGD:9068941
G Prkaca protein kinase cAMP-activated catalytic subunit alpha JBrowse link NW_004955415 32,794,172 32,807,944 RGD:9068941
G Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha JBrowse link NW_004955478 4,241,283 4,262,119 RGD:9068941
G Scx scleraxis bHLH transcription factor JBrowse link NW_004955454 2,886,981 2,888,829 RGD:9068941
G Smad2 SMAD family member 2 JBrowse link NW_004955402 33,131,760 33,217,144 RGD:9068941
G Smad3 SMAD family member 3 JBrowse link NW_004955450 8,747,651 8,842,003 RGD:9068941
G Snai1 snail family transcriptional repressor 1 JBrowse link NW_004955445 8,232,084 8,237,893 RGD:9068941
G Srf serum response factor JBrowse link NW_004955437 9,100,546 9,109,305 RGD:9068941
G Tbx6 T-box transcription factor 6 JBrowse link NW_004955493 6,888,832 6,894,840 RGD:9068941
G Tlx2 T cell leukemia homeobox 2 JBrowse link NW_004955424 11,269,426 11,275,200 RGD:9068941
G Twsg1 twisted gastrulation BMP signaling modulator 1 JBrowse link NW_004955402 2,652,020 2,685,350 RGD:9068941
G Txnrd1 thioredoxin reductase 1 JBrowse link NW_004955405 38,863,762 38,928,615 RGD:9068941
G Wls Wnt ligand secretion mediator JBrowse link NW_004955423 23,374,401 23,465,308 RGD:9068941
mesoderm migration involved in gastrulation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 JBrowse link NW_004955459 9,641,926 9,783,718 RGD:9068941
G Tbxt T-box transcription factor T JBrowse link NW_004955439 15,675,680 15,683,542 RGD:9068941
mesoderm morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Setd2 SET domain containing 2, histone lysine methyltransferase JBrowse link NW_004955420 25,070,626 25,178,410 RGD:9068941
G Tbx3 T-box transcription factor 3 JBrowse link NW_004955455 15,988,153 16,000,156 RGD:9068941
mesodermal cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004955409 9,432,835 9,439,680 RGD:9068941
G Fgfr2 fibroblast growth factor receptor 2 JBrowse link NW_004955551 2,321,190 2,427,000 RGD:9068941
G Hmga2 high mobility group AT-hook 2 JBrowse link NW_004955458 12,493,790 12,624,805 RGD:9068941
G Inhba inhibin subunit beta A JBrowse link NW_004955460 2,054,879 2,066,628 RGD:9068941
G Itga2 integrin subunit alpha 2 JBrowse link NW_004955446 14,309,516 14,421,991 RGD:9068941
G Itga3 integrin subunit alpha 3 JBrowse link NW_004955451 11,563,120 11,590,119 RGD:9068941
G Itga8 integrin subunit alpha 8 JBrowse link NW_004955429 11,932,764 12,120,757 RGD:9068941
G Itgb1 integrin subunit beta 1 JBrowse link NW_004955462 4,454,809 4,483,227 RGD:9068941
G Itgb3 integrin subunit beta 3 JBrowse link NW_004955478 9,788,192 9,830,254 RGD:9068941
G Itgb4 integrin subunit beta 4 JBrowse link NW_004955506 6,493,466 6,526,778 RGD:9068941
G Kdm6a lysine demethylase 6A JBrowse link NW_004955516 3,151,350 3,346,832 RGD:9068941
G Kdm6b lysine demethylase 6B JBrowse link NW_004955467 9,085,239 9,106,658 RGD:9068941
mesodermal cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nanog Nanog homeobox JBrowse link NW_004955413 6,561,323 6,565,770 RGD:9068941
G Pou5f1 POU class 5 homeobox 1 JBrowse link NW_004955583 995,707 1,003,202 RGD:9068941
G Smad1 SMAD family member 1 JBrowse link NW_004955428 1,357,398 1,429,521 RGD:9068941
mesodermal cell fate determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004955409 9,432,835 9,439,680 RGD:9068941
mesodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eya1 EYA transcriptional coactivator and phosphatase 1 JBrowse link NW_004955444 8,336,071 8,655,041 RGD:9068941
G Hoxa11 homeobox A11 JBrowse link NW_004955410 28,875,780 28,879,643 RGD:9068941
G Pax2 paired box 2 JBrowse link NW_004955485 9,351,913 9,430,607 RGD:9068941
G Six2 SIX homeobox 2 JBrowse link NW_004955441 12,029,530 12,033,214 RGD:9068941
negative regulation of mesoderm development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cer1 cerberus 1, DAN family BMP antagonist JBrowse link NW_004955434 17,738,281 17,740,823 RGD:9068941
G Rps6ka6 ribosomal protein S6 kinase A6 JBrowse link NW_004955529 3,115,652 3,296,505 RGD:9068941
G Sall1 spalt like transcription factor 1 JBrowse link NW_004955433 9,146,074 9,161,171 RGD:9068941
G Tp63 tumor protein p63 JBrowse link NW_004955420 18,178,639 18,384,786 RGD:9068941
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 JBrowse link NW_004955425 7,353,964 7,357,599 RGD:9068941
G Sfrp2 secreted frizzled related protein 2 JBrowse link NW_004955471 8,103,937 8,112,596 RGD:9068941
nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 JBrowse link NW_004955436 20,370,950 20,372,677 RGD:9068941
G Nodal nodal growth differentiation factor JBrowse link NW_004955437 20,828,448 20,835,486 RGD:9068941
paraxial mesoderm development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmpr1a bone morphogenetic protein receptor type 1A JBrowse link NW_004955510 5,812,571 5,936,312 RGD:9068941
G Dll3 delta like canonical Notch ligand 3 JBrowse link NW_004955468 70,714 78,831 RGD:9068941
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 JBrowse link NW_004955459 9,641,926 9,783,718 RGD:9068941
G Fgfr1 fibroblast growth factor receptor 1 JBrowse link NW_004955463 14,013,247 14,064,354 RGD:9068941
G Nckap1 NCK associated protein 1 JBrowse link NW_004955403 14,476,689 14,554,380 RGD:9068941
G Nup133 nucleoporin 133 JBrowse link NW_004955492 8,583,902 8,641,891 RGD:9068941
G Poglut1 protein O-glucosyltransferase 1 JBrowse link NW_004955427 19,188,512 19,206,050 RGD:9068941
G Tcf15 transcription factor 15 JBrowse link NW_004955597 446,489 452,003 RGD:9068941
G Tead1 TEA domain transcription factor 1 JBrowse link NW_004955414 28,166,562 28,341,275 RGD:9068941
G Tead2 TEA domain transcription factor 2 JBrowse link NW_004955559 1,450,706 1,465,947 RGD:9068941
G Yap1 Yes1 associated transcriptional regulator JBrowse link NW_004955412 5,423,866 5,533,728 RGD:9068941
paraxial mesoderm formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exoc4 exocyst complex component 4 JBrowse link NW_004955410 33,937,825 34,672,790 RGD:9068941
G Hnf1a HNF1 homeobox A JBrowse link NW_004955455 10,694,102 10,717,613 RGD:9068941
G Htt huntingtin JBrowse link NW_004955514 1,906,189 2,042,357 RGD:9068941
G Lef1 lymphoid enhancer binding factor 1 JBrowse link NW_004955496 1,728,840 1,827,749 RGD:9068941
G Wnt11 Wnt family member 11 JBrowse link NW_004955414 15,674,478 15,694,758 RGD:9068941
G Wnt5a Wnt family member 5A JBrowse link NW_004955430 5,304,817 5,325,684 RGD:9068941
paraxial mesoderm morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nckap1 NCK associated protein 1 JBrowse link NW_004955403 14,476,689 14,554,380 RGD:9068941
G Smad2 SMAD family member 2 JBrowse link NW_004955402 33,131,760 33,217,144 RGD:9068941
G Smad3 SMAD family member 3 JBrowse link NW_004955450 8,747,651 8,842,003 RGD:9068941
paraxial mesoderm structural organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmpr1a bone morphogenetic protein receptor type 1A JBrowse link NW_004955510 5,812,571 5,936,312 RGD:9068941
paraxial mesodermal cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wnt3a Wnt family member 3A JBrowse link NW_004955581 351,375 382,541 RGD:9068941
positive regulation of mesoderm development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Etv2 ETS variant transcription factor 2 JBrowse link NW_004955468 4,857,023 4,859,926 RGD:9068941
G Mixl1 Mix paired-like homeobox JBrowse link NW_004955489 418,650 422,428 RGD:9068941
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gja1 gap junction protein alpha 1 JBrowse link NW_004955436 3,612,533 3,618,095 RGD:9068941
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wnt3a Wnt family member 3A JBrowse link NW_004955581 351,375 382,541 RGD:9068941
positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smad2 SMAD family member 2 JBrowse link NW_004955402 33,131,760 33,217,144 RGD:9068941
G Zic2 Zic family member 2 JBrowse link NW_004955404 10,731,987 10,735,599 RGD:9068941
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmpr1a bone morphogenetic protein receptor type 1A JBrowse link NW_004955510 5,812,571 5,936,312 RGD:9068941
G Fgfr1 fibroblast growth factor receptor 1 JBrowse link NW_004955463 14,013,247 14,064,354 RGD:9068941
regulation of mesoderm development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pus7 pseudouridine synthase 7 JBrowse link NW_004955410 10,062,768 10,119,751 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11825
    developmental process 5547
      anatomical structure development 5189
        tissue development 1843
          mesoderm development 109
            axial mesoderm development + 9
            digestive tract mesoderm development 1
            ectoderm and mesoderm interaction 1
            gonadal mesoderm development 0
            intermediate mesoderm development + 2
            lateral mesoderm development + 13
            mesectoderm development 0
            mesendoderm development + 4
            mesoderm morphogenesis + 71
            negative regulation of mesoderm development + 6
            paraxial mesoderm development + 20
            positive regulation of mesoderm development + 6
            regulation of mesoderm development + 15
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.