ONTOLOGY REPORT - ANNOTATIONS


Term:dosage compensation
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Accession:GO:0007549 term browser browse the term
Definition:Compensating for the variation in the unpaired sex chromosome:autosome chromosome ratios between sexes by activation or inactivation of genes on one or both of the sex chromosomes.
Synonyms:xref: Wikipedia:Dosage_compensation


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dosage compensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G H2afy H2A histone family, member Y JBrowse link 17 9,282,109 9,344,698 RGD:1624291
RGD:1600115
G H2afy2 H2A histone family, member Y2 JBrowse link 20 31,352,924 31,402,483 RGD:1624291
RGD:1600115
dosage compensation by inactivation of X chromosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brca1 BRCA1, DNA repair associated JBrowse link 10 89,394,821 89,455,093 RGD:1624291
RGD:13792537
G Eif1 eukaryotic translation initiation factor 1 JBrowse link 10 88,227,455 88,229,546 RGD:1624291
RGD:1600115
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
RGD:1600115
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1624291
RGD:1600115
G Lrif1 ligand dependent nuclear receptor interacting factor 1 JBrowse link 2 209,358,668 209,448,123 RGD:1600115
RGD:1624291
G Mettl3 methyltransferase-like 3 JBrowse link 15 28,710,299 28,721,491 RGD:1600115
RGD:1624291
G Rbm15 RNA binding motif protein 15 JBrowse link 2 210,079,678 210,090,200 RGD:1600115
RGD:1624291
G Rbm15b RNA binding motif protein 15B JBrowse link 8 115,618,242 115,623,068 RGD:1600115
RGD:1624291
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 JBrowse link 9 119,675,750 119,818,620 RGD:1624291
G Upf1 UPF1, RNA helicase and ATPase JBrowse link 16 20,824,888 20,845,632 RGD:1600115
RGD:1624291
G Ythdc1 YTH domain containing 1 JBrowse link 14 22,971,834 23,002,326 RGD:1600115
RGD:1624291
inactivation of paternal X chromosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prdm14 PR/SET domain 14 JBrowse link 5 5,710,076 5,730,560 RGD:1624291
RGD:1600115
inactivation of X chromosome by DNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dnmt3b DNA methyltransferase 3 beta JBrowse link 3 149,131,541 149,170,061 RGD:1624291
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 JBrowse link 9 119,675,750 119,818,620 RGD:1624291
RGD:1600115
inactivation of X chromosome by genetic imprinting term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pcgf3 polycomb group ring finger 3 JBrowse link 14 2,247,805 2,297,155 RGD:1624291
RGD:13792537
G Pcgf5 polycomb group ring finger 5 JBrowse link 1 254,974,688 255,090,925 RGD:1624291
RGD:13792537
G Pcgf6 polycomb group ring finger 6 JBrowse link 1 266,811,418 266,831,022 RGD:13792537
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 JBrowse link 9 119,675,750 119,818,620 RGD:1600115
RGD:1624291
random inactivation of X chromosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdyl chromodomain Y-like JBrowse link 17 29,672,925 29,895,416 RGD:1624291
RGD:1600115
G LOC100910646 E3 ubiquitin-protein ligase RLIM-like JBrowse link X 73,757,664 73,778,757 RGD:1624291
G NEWGENE_1559832 ring finger protein, LIM domain interacting JBrowse link X 74,838,159 74,859,561 RGD:13792537
G Rlim ring finger protein, LIM domain interacting JBrowse link X 73,757,664 73,778,763 RGD:1624291
RGD:13792537
regulation of dosage compensation by inactivation of X chromosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ftx FTX transcript, XIST regulator JBrowse link X 74,440,265 74,484,164 RGD:1624291
G Jpx JPX transcript, XIST activator JBrowse link X 74,360,739 74,410,973 RGD:1624291
G LOC100910646 E3 ubiquitin-protein ligase RLIM-like JBrowse link X 73,757,664 73,778,757 RGD:1624291
G NEWGENE_1559832 ring finger protein, LIM domain interacting JBrowse link X 74,838,159 74,859,561 RGD:13792537
G Rlim ring finger protein, LIM domain interacting JBrowse link X 73,757,664 73,778,763 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17928
    regulation of biological process 11965
      regulation of metabolic process 6144
        regulation of macromolecule metabolic process 5660
          regulation of gene expression 3937
            regulation of gene expression, epigenetic 258
              dosage compensation 24
                dosage compensation by hyperactivation of X chromosome + 0
                dosage compensation by hypoactivation of X chromosome + 0
                dosage compensation by inactivation of X chromosome + 22
                dosage compensation complex assembly + 0
Path 2
Term Annotations click to browse term
  biological_process 17928
    biological regulation 12623
      regulation of biological process 11965
        regulation of metabolic process 6144
          regulation of macromolecule metabolic process 5660
            regulation of gene expression 3937
              regulation of gene expression, epigenetic 258
                dosage compensation 24
                  dosage compensation by hyperactivation of X chromosome + 0
                  dosage compensation by hypoactivation of X chromosome + 0
                  dosage compensation by inactivation of X chromosome + 22
                  dosage compensation complex assembly + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.