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ONTOLOGY REPORT - ANNOTATIONS


Term:response to nutrient
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Accession:GO:0007584 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
Synonyms:exact_synonym: response to nutrients
 narrow_synonym: nutritional response pathway


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response to nutrient term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A2m alpha-2-macroglobulin IEP RGD PMID:9446838 RGD:1598510 NCBI chr 4:154,309,426...154,359,138
Ensembl chr 4:154,309,426...154,359,137
JBrowse link
G Aacs acetoacetyl-CoA synthetase IDA RGD PMID:3082367 RGD:2301027 NCBI chr12:36,512,393...36,555,694
Ensembl chr12:36,512,393...36,555,694
JBrowse link
G Abca1 ATP binding cassette subfamily A member 1 IEP RGD PMID:15710224 RGD:1598545 NCBI chr 5:69,857,717...69,983,042
Ensembl chr 5:69,857,771...69,983,015
JBrowse link
G Abcg5 ATP binding cassette subfamily G member 5 IEP RGD PMID:15710224 RGD:1598545 NCBI chr 6:7,935,771...7,961,207
Ensembl chr 6:7,935,771...7,961,207
JBrowse link
G Abcg8 ATP binding cassette subfamily G member 8 IEP RGD PMID:15710224 RGD:1598545 NCBI chr 6:7,961,413...7,980,708
Ensembl chr 6:7,961,413...7,980,708
JBrowse link
G Acaa1a acetyl-CoA acyltransferase 1A IDA RGD PMID:8954134 RGD:1598676 NCBI chr 8:128,027,880...128,036,471
Ensembl chr 8:128,027,958...128,036,236
JBrowse link
G Acadm acyl-CoA dehydrogenase medium chain IEP RGD PMID:15863369 RGD:1598687 NCBI chr 2:260,124,418...260,148,589
Ensembl chr 2:260,124,418...260,148,589
JBrowse link
G Acsl1 acyl-CoA synthetase long-chain family member 1 IEP RGD PMID:15811777 RGD:1625742 NCBI chr16:48,937,456...49,003,898
Ensembl chr16:48,937,456...49,003,246
JBrowse link
G Acsl3 acyl-CoA synthetase long-chain family member 3 IEP RGD PMID:16772660 RGD:1599807 NCBI chr 9:84,569,601...84,593,565
Ensembl chr 9:84,569,597...84,593,565
JBrowse link
G Acsl4 acyl-CoA synthetase long-chain family member 4 IEP RGD PMID:16772660 RGD:1599807 NCBI chr  X:113,596,247...113,660,024
Ensembl chr  X:113,596,239...113,659,944
JBrowse link
G Acsl5 acyl-CoA synthetase long-chain family member 5 IEP RGD PMID:16772660 RGD:1599807 NCBI chr 1:276,240,703...276,290,012
Ensembl chr 1:276,240,703...276,290,008
JBrowse link
G Acsl6 acyl-CoA synthetase long-chain family member 6 IEP RGD PMID:16772660 RGD:1599807 NCBI chr10:39,654,771...39,717,592
Ensembl chr10:39,655,455...39,719,312
JBrowse link
G Adipoq adiponectin, C1Q and collagen domain containing IEP RGD PMID:17217160 RGD:1599130 NCBI chr11:81,330,845...81,344,488
Ensembl chr11:81,330,293...81,344,488
JBrowse link
G Adipor2 adiponectin receptor 2 IEP RGD PMID:16483885 RGD:1625763 NCBI chr 4:151,412,135...151,480,108
Ensembl chr 4:151,414,684...151,428,894
JBrowse link
G Adsl adenylosuccinate lyase IDA RGD PMID:7128902 RGD:1598767 NCBI chr 7:122,157,201...122,192,328
Ensembl chr 7:122,157,201...122,192,328
JBrowse link
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase IDA RGD PMID:1413626 RGD:1598782 NCBI chr 2:219,788,234...219,843,189
Ensembl chr 2:219,788,234...219,842,986
JBrowse link
G Agtr1b angiotensin II receptor, type 1b IEP RGD PMID:9062366 RGD:1598887 NCBI chr 2:105,149,020...105,224,335
Ensembl chr 2:105,149,020...105,224,295
JBrowse link
G Ahcy adenosylhomocysteinase IDA RGD PMID:11575573 RGD:1598897 NCBI chr 3:150,587,833...150,603,057
Ensembl chr 3:150,587,833...150,603,082
JBrowse link
G Akr1c3 aldo-keto reductase family 1, member C3 ISO (PMID:19007764) RGD PMID:19007764 NCBI chr17:69,761,126...69,778,021
Ensembl chr17:69,761,118...69,778,021
JBrowse link
G Alad aminolevulinate dehydratase IDA RGD PMID:2394940 RGD:1599023 NCBI chr 5:78,368,867...78,379,206
Ensembl chr 5:78,368,867...78,379,346
JBrowse link
G Alb albumin IEP RGD PMID:20227002 RGD:2325685 NCBI chr14:19,176,275...19,191,793
Ensembl chr14:19,176,277...19,191,863
JBrowse link
G Aldh3a1 aldehyde dehydrogenase 3 family, member A1 IEP RGD PMID:7751973 RGD:2300308 NCBI chr10:47,490,168...47,499,855
Ensembl chr10:47,490,153...47,499,876
JBrowse link
G Alox5 arachidonate 5-lipoxygenase IEP RGD PMID:16956363 RGD:1626155 NCBI chr 4:148,398,004...148,446,308
Ensembl chr 4:148,398,892...148,446,303
JBrowse link
G Amelx amelogenin, X-linked IEP RGD PMID:12667550 RGD:1599089 NCBI chr  X:26,439,197...26,450,495
Ensembl chr  X:26,439,197...26,450,495
JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 IEP RGD PMID:14973070 RGD:2325748 NCBI chr 7:31,699,309...31,784,192
Ensembl chr 7:31,699,885...31,784,192
JBrowse link
G Apoa1 apolipoprotein A1 IEP RGD PMID:7556148, PMID:2504861 RGD:1599154, RGD:1599162 NCBI chr 8:50,525,091...50,526,875
Ensembl chr 8:50,525,091...50,526,875
JBrowse link
G Apoc3 apolipoprotein C3 IEP RGD PMID:7811230 RGD:1599187 NCBI chr 8:50,529,318...50,531,498
Ensembl chr 8:50,529,318...50,531,498
JBrowse link
G Arg2 arginase 2 IEP flavanol-containing dietary RGD PMID:18348861 RGD:4143283 NCBI chr 6:102,311,097...102,338,406
Ensembl chr 6:102,311,116...102,338,520
JBrowse link
G Arsa arylsulfatase A IDA RGD PMID:4403 RGD:1599236 NCBI chr 7:130,446,644...130,452,632
Ensembl chr 7:130,446,668...130,451,283
JBrowse link
G Arsb arylsulfatase B IDA RGD PMID:2290353 RGD:1599230 NCBI chr 2:23,385,154...23,543,028
Ensembl chr 2:23,385,183...23,544,963
JBrowse link
G Asl argininosuccinate lyase IEP RGD PMID:2547341 RGD:1599290 NCBI chr12:30,160,922...30,178,348
Ensembl chr12:30,165,694...30,178,341
JBrowse link
G Ass1 argininosuccinate synthase 1 IEP RGD PMID:15257170 RGD:1599306 NCBI chr 3:10,327,411...10,375,847
Ensembl chr 3:10,327,414...10,375,826
JBrowse link
G Bche butyrylcholinesterase IDA RGD PMID:15002734 RGD:1599460 NCBI chr 2:171,104,476...171,196,186
Ensembl chr 2:171,100,140...171,196,395
JBrowse link
G Bckdha branched chain keto acid dehydrogenase E1 subunit alpha IEP RGD PMID:8109974 RGD:1599469 NCBI chr 1:82,423,291...82,452,094
Ensembl chr 1:82,423,277...82,452,281
JBrowse link
G Bckdhb branched chain keto acid dehydrogenase E1 subunit beta IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:8109974, PMID:21873635 RGD:1599469, RGD:13792537 NCBI chr 8:91,464,229...91,656,134
Ensembl chr 8:91,464,229...91,656,134
JBrowse link
G Bcl2 BCL2, apoptosis regulator IEP RGD PMID:16216918 RGD:1599487 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Bdh1 3-hydroxybutyrate dehydrogenase 1 IEP hyperlipidic diet RGD PMID:1804504 RGD:4105447 NCBI chr11:72,577,547...72,619,435
Ensembl chr11:72,578,533...72,614,176
JBrowse link
G Brca1 BRCA1, DNA repair associated IEP RGD PMID:17044772 RGD:1599498 NCBI chr10:89,394,821...89,455,093
Ensembl chr10:89,394,803...89,454,681
JBrowse link
G Brca2 BRCA2, DNA repair associated IEP RGD PMID:14583453 RGD:1342419 NCBI chr12:503,660...544,754
Ensembl chr12:504,007...544,748
JBrowse link
G C2 complement C2 IEP RGD PMID:6776243 RGD:1600580 NCBI chr20:4,542,340...4,561,152
Ensembl chr20:4,542,340...4,561,152
JBrowse link
G Cav1 caveolin 1 IEP RGD PMID:16335790 RGD:2289099 NCBI chr 4:44,597,123...44,630,206
Ensembl chr 4:44,597,123...44,630,200
JBrowse link
G Cckar cholecystokinin A receptor IEP RGD PMID:15127944 RGD:2313376 NCBI chr14:59,610,939...59,619,786
Ensembl chr14:59,611,434...59,619,783
JBrowse link
G Ccl28 C-C motif chemokine ligand 28 IEP high salt diet RGD PMID:19829664 RGD:4892132 NCBI chr 2:52,379,341...52,403,979
Ensembl chr 2:52,379,341...52,404,246
JBrowse link
G Cd36 CD36 molecule IEP RGD PMID:17640331 RGD:2307225 NCBI chr 4:14,150,309...14,191,498
Ensembl chr 4:14,001,761...14,249,749
JBrowse link
G Cd3e CD3e molecule IDA RGD PMID:10498748 RGD:1600792 NCBI chr 8:49,297,604...49,309,370
Ensembl chr 8:49,297,608...49,308,806
JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha IEP RGD PMID:16856317 RGD:1625375 NCBI chr 1:91,363,492...91,366,164
Ensembl chr 1:91,363,492...91,366,164
JBrowse link
G Chat choline O-acetyltransferase IEP RGD PMID:17192613 RGD:1600843 NCBI chr16:8,576,858...8,686,131
Ensembl chr16:8,577,840...8,686,131
JBrowse link
G Cnr1 cannabinoid receptor 1 IEP RGD PMID:19807847 RGD:2314641 NCBI chr 5:49,307,584...49,333,064
Ensembl chr 5:49,311,030...49,333,056
JBrowse link
G Col1a1 collagen type I alpha 1 chain IEP RGD PMID:15042712 RGD:1600915 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Cox4i1 cytochrome c oxidase subunit 4i1 IEP RGD PMID:18725894 RGD:2301376 NCBI chr19:54,245,958...54,252,198
Ensembl chr19:54,245,950...54,252,225
JBrowse link
G Cp ceruloplasmin IEP RGD PMID:16597684 RGD:1599628 NCBI chr 2:104,744,249...104,803,034
Ensembl chr 2:104,744,461...104,799,853
JBrowse link
G Ctrb1 chymotrypsinogen B1 IEP RGD PMID:3885943 RGD:2303368 NCBI chr19:43,906,344...43,911,020
Ensembl chr19:43,906,292...43,911,057
JBrowse link
G Cubn cubilin IMP RGD PMID:15616221 RGD:1599657 NCBI chr17:80,584,921...80,807,181
Ensembl chr17:80,584,878...80,807,243
JBrowse link
G Cybb cytochrome b-245 beta chain IEP RGD PMID:16784966 RGD:1599678 NCBI chr  X:14,578,330...14,610,049
Ensembl chr  X:14,578,264...14,612,547
JBrowse link
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 IEP RGD PMID:16844298 RGD:1599695 NCBI chr 8:62,798,317...62,809,848
Ensembl chr 8:62,779,875...62,809,893
JBrowse link
G Cyp11b2 cytochrome P450, family 11, subfamily b, polypeptide 2 IEP potassium RGD PMID:16882930 RGD:1600074 NCBI chr 7:116,248,759...116,255,205
Ensembl chr 7:116,156,219...116,255,167
JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 IEP soy protein isolate RGD PMID:11739881 RGD:7829754 NCBI chr 6:2,308,179...2,316,739
Ensembl chr 6:2,307,808...2,316,722
JBrowse link
G Cyp2c7 cytochrome P450, family 2, subfamily c, polypeptide 7 IEP RGD PMID:8534269 RGD:2301474 NCBI chr 1:147,422,999...148,119,979
Ensembl chr 1:148,053,687...148,119,857
JBrowse link
G Cyp3a23-3a1 cytochrome P450, family 3, subfamily a, polypeptide 23-polypeptide 1 IEP RGD PMID:16380645 RGD:1625391 NCBI chr12:11,053,888...11,082,742
Ensembl chr12:11,655,402...11,733,136
JBrowse link
G Dad1 defender against cell death 1 IEP RGD PMID:11444866 RGD:1601045 NCBI chr15:32,868,136...32,887,933
Ensembl chr15:32,868,087...32,888,095
JBrowse link
G Ddit3 DNA-damage inducible transcript 3 IEP RGD PMID:12609979 RGD:1299136 NCBI chr 7:70,578,564...70,585,074
Ensembl chr 7:70,580,198...70,585,084
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase IDA RGD PMID:8252488 RGD:1599792 NCBI chr 2:221,823,692...222,694,627
Ensembl chr 2:221,823,687...222,694,627
JBrowse link
G Epo erythropoietin IEP RGD PMID:19136608 RGD:2313644 NCBI chr12:22,274,828...22,278,268
Ensembl chr12:22,274,828...22,278,266
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit IEP RGD PMID:14670002 RGD:2316276 NCBI chr 1:80,256,973...80,268,198
Ensembl chr 1:80,256,973...80,268,198
JBrowse link
G Fads1 fatty acid desaturase 1 IEP RGD PMID:16333142 RGD:1625417 NCBI chr 1:226,234,034...226,249,118
Ensembl chr 1:226,234,074...226,249,138
JBrowse link
G Gatm glycine amidinotransferase IDA RGD PMID:11595668 RGD:1599817 NCBI chr 3:114,711,570...114,728,155
Ensembl chr 3:114,711,562...114,728,410
JBrowse link
G Gclc glutamate-cysteine ligase, catalytic subunit IEP RGD PMID:22906634 RGD:11049541 NCBI chr 8:85,059,051...85,097,471
Ensembl chr 8:85,059,051...85,097,468
JBrowse link
G Gclm glutamate cysteine ligase, modifier subunit IEP RGD PMID:22906634 RGD:11049541 NCBI chr 2:225,827,504...225,847,876
Ensembl chr 2:225,827,504...225,847,874
JBrowse link
G Glrx glutaredoxin IEP mRNA:decreased expression:heart: RGD PMID:18163565 RGD:2306160 NCBI chr 2:2,606,032...2,615,944
Ensembl chr 2:2,605,996...2,615,944
JBrowse link
G Gnpat glyceronephosphate O-acyltransferase IEP RGD PMID:1546971 RGD:2313672 NCBI chr19:57,614,813...57,640,524
Ensembl chr19:57,614,628...57,640,726
JBrowse link
G Hat1 histone acetyltransferase 1 IEP RGD PMID:17182829 RGD:2316578 NCBI chr 3:58,022,395...58,070,067
Ensembl chr 3:58,022,238...58,070,068
JBrowse link
G Havcr1 hepatitis A virus cellular receptor 1 IEP RGD PMID:18815216 RGD:2316595 NCBI chr10:31,813,819...31,860,934
Ensembl chr10:31,813,814...31,848,379
JBrowse link
G Hmgcl 3-hydroxy-3-methylglutaryl-CoA lyase IEP high-fat diet RGD PMID:5667251 RGD:2326171 NCBI chr 5:154,294,841...154,308,582
Ensembl chr 5:154,294,806...154,308,640
JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase IEP RGD PMID:16702306 RGD:2313754 NCBI chr 2:27,480,224...27,500,654
Ensembl chr 2:27,480,226...27,500,654
JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 IEP RGD PMID:17103110 RGD:1599890 NCBI chr 2:200,452,623...200,480,785
Ensembl chr 2:200,452,624...200,479,423
JBrowse link
G Hsf1 heat shock transcription factor 1 IEP RGD PMID:24465380 RGD:10402568 NCBI chr 7:117,538,523...117,565,478
Ensembl chr 7:117,538,523...117,565,478
JBrowse link
G Igf1 insulin-like growth factor 1 IEP RGD PMID:2383530 RGD:10046040 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
G Igfbp2 insulin-like growth factor binding protein 2 IEP RGD PMID:15576465 RGD:1626503 NCBI chr 9:80,118,029...80,144,804
Ensembl chr 9:80,118,029...80,144,789
JBrowse link
G Il1b interleukin 1 beta IEP RGD PMID:17437639 RGD:1626622 NCBI chr 3:121,876,256...121,882,637
Ensembl chr 3:121,876,263...121,882,726
JBrowse link
G Il4 interleukin 4 IEP RGD PMID:19608731 RGD:5128779 NCBI chr10:38,963,979...38,969,531
Ensembl chr10:38,963,979...38,969,531
JBrowse link
G Il6st interleukin 6 signal transducer IEP RGD PMID:15371280 RGD:1627569 NCBI chr 2:44,279,199...44,319,427
Ensembl chr 2:44,289,393...44,314,944
JBrowse link
G Klk1 kallikrein 1 IEP RGD PMID:12489811 RGD:1641808 NCBI chr 1:100,131,562...100,135,556
Ensembl chr 1:100,059,967...100,203,329
Ensembl chr 1:100,059,967...100,203,329
Ensembl chr 1:100,059,967...100,203,329
JBrowse link
G Lct lactase IDA RGD PMID:16497337 RGD:1600244 NCBI chr13:44,998,414...45,040,593
Ensembl chr13:44,998,414...45,040,593
JBrowse link
G Ldha lactate dehydrogenase A IEP RGD PMID:15110778 RGD:1600272 NCBI chr 1:102,900,288...102,909,713
Ensembl chr 1:102,900,286...102,909,707
JBrowse link
G Lep leptin IEP protein:altered expression: serum RGD PMID:15616803, PMID:29089335 RGD:1581835, RGD:21410183 NCBI chr 4:56,337,695...56,351,818
Ensembl chr 4:56,337,695...56,351,818
JBrowse link
G Lepr leptin receptor IEP RGD PMID:18755573 RGD:5129092 NCBI chr 5:120,503,475...120,682,281
Ensembl chr 5:120,564,645...120,682,221
JBrowse link
G Lipg lipase G, endothelial type IEP RGD PMID:1935790 RGD:1641820 NCBI chr18:70,903,528...70,924,434
Ensembl chr18:70,901,710...70,924,708
JBrowse link
G Lta lymphotoxin alpha IEP RGD PMID:12122042 RGD:628312 NCBI chr20:4,851,889...4,854,677
Ensembl chr20:4,852,496...4,854,677
JBrowse link
G Mapt microtubule-associated protein tau IDA RGD PMID:16495207 RGD:1599923 NCBI chr10:92,289,002...92,386,517
Ensembl chr10:92,288,910...92,386,517
JBrowse link
G Mgp matrix Gla protein IEP RGD PMID:1757478 RGD:1582514 NCBI chr 4:170,856,783...170,860,105
Ensembl chr 4:170,856,751...170,860,225
JBrowse link
G Mmp9 matrix metallopeptidase 9 IEP RGD PMID:17650800 RGD:1642032 NCBI chr 3:161,413,410...161,421,473
Ensembl chr 3:161,413,298...161,421,520
JBrowse link
G Mt-cyb mitochondrially encoded cytochrome b IEP RGD PMID:5954822 RGD:2298983 NCBI chr MT:14,136...15,278
Ensembl chr MT:14,136...15,278
JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO (PMID:17028174) RGD PMID:17028174 NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 IEP RGD PMID:21057821 RGD:5131436 NCBI chr19:19,342,061...19,389,366
Ensembl chr19:19,332,594...19,377,492
JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 IEP RGD PMID:21092375 RGD:5133236 NCBI chr19:38,422,210...38,437,103
Ensembl chr19:38,422,164...38,437,180
JBrowse link
G Oxct1 3-oxoacid CoA transferase 1 IEP RGD PMID:20025965 RGD:2326188 NCBI chr 2:53,859,738...54,007,733
Ensembl chr 2:53,859,737...54,007,756
JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase IEP RGD PMID:9566595 RGD:1642373 NCBI chr10:46,339,821...46,404,640
Ensembl chr10:46,339,821...46,404,642
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 IEP soybean diet
high-fat diet
RGD PMID:19880292, PMID:19657097 RGD:4107735, RGD:4108477 NCBI chr 2:31,742,326...31,826,882
Ensembl chr 2:31,745,088...31,826,867
JBrowse link
G Pklr pyruvate kinase L/R IEP RGD PMID:11368649 RGD:1625592 NCBI chr 2:188,449,158...188,458,034
Ensembl chr 2:188,449,210...188,459,592
JBrowse link
G Pkm pyruvate kinase M1/2 IEP RGD PMID:7929251 RGD:2303136 NCBI chr 8:64,480,963...64,502,957
Ensembl chr 8:64,481,172...64,502,722
JBrowse link
G Plec plectin IDA RGD PMID:12095991 RGD:729534 NCBI chr 7:117,230,319...117,291,859
Ensembl chr 7:117,230,319...117,289,961
JBrowse link
G Por cytochrome p450 oxidoreductase IEP low protein diet RGD PMID:17392395 RGD:4889828 NCBI chr12:23,998,411...24,017,063
Ensembl chr12:23,998,411...24,046,814
JBrowse link
G Prl prolactin IEP RGD PMID:17447162 RGD:1642572 NCBI chr17:39,814,236...39,824,299
Ensembl chr17:39,814,244...39,824,299
JBrowse link
G Prss1 serine protease 1 IEP RGD PMID:2363685 RGD:1599973 NCBI chr 4:70,776,046...70,779,249
Ensembl chr 4:70,776,046...70,779,249
JBrowse link
G Prss2 protease, serine, 2 IEP RGD PMID:2363685 RGD:1599973 NCBI chr 4:70,689,737...70,694,816
Ensembl chr 4:70,689,737...70,694,761
JBrowse link
G Pten phosphatase and tensin homolog IEP RGD PMID:17166883 RGD:2292540 NCBI chr 1:251,421,814...251,487,634
Ensembl chr 1:251,421,596...251,487,832
JBrowse link
G Rps6kb1 ribosomal protein S6 kinase B1 IEP RGD PMID:10913029 RGD:1642983 NCBI chr10:73,824,200...73,865,503
Ensembl chr10:73,824,202...73,865,364
JBrowse link
G Rxra retinoid X receptor alpha IEP RGD PMID:14986719 RGD:1643116 NCBI chr 3:6,272,560...6,295,354
Ensembl chr 3:6,211,789...6,295,908
JBrowse link
G Ryr2 ryanodine receptor 2 IEP RGD PMID:17224993 RGD:1599246 NCBI chr17:65,533,998...65,955,606
Ensembl chr17:65,535,403...65,955,606
JBrowse link
G Serpinc1 serpin family C member 1 IDA RGD PMID:17123684 RGD:1599322 NCBI chr13:78,806,107...78,820,375
Ensembl chr13:78,805,347...78,833,192
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 IEP RGD PMID:17341692 RGD:4107716 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Shank2 SH3 and multiple ankyrin repeat domains 2 IEP dietary phosphate RGD PMID:15917299 RGD:7243142 NCBI chr 1:217,149,156...217,593,950
Ensembl chr 1:217,151,166...217,592,763
JBrowse link
G Si sucrase-isomaltase IEP RGD PMID:7873573 RGD:1625555 NCBI chr 2:170,220,794...170,301,348
Ensembl chr 2:170,221,245...170,301,348
JBrowse link
G Slc27a4 solute carrier family 27 member 4 IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:17638014, PMID:21873635 RGD:2312797, RGD:13792537 NCBI chr 3:8,363,937...8,376,858
Ensembl chr 3:8,363,937...8,376,858
JBrowse link
G Slc34a1 solute carrier family 34 member 1 IEP dietary phosphate RGD PMID:10027934 RGD:7243095 NCBI chr17:9,747,766...9,762,739
Ensembl chr17:9,747,752...9,762,813
JBrowse link
G Slc37a4 solute carrier family 37 member 4 IEP RGD PMID:2996302 RGD:1625652 NCBI chr 8:48,716,914...48,723,024
Ensembl chr 8:48,716,939...48,723,024
JBrowse link
G Slc6a19 solute carrier family 6 member 19 IEP RGD PMID:17264310 RGD:1600036 NCBI chr 1:32,199,869...32,218,628
Ensembl chr 1:32,199,810...32,220,045
JBrowse link
G Slc6a4 solute carrier family 6 member 4 IEP RGD PMID:21068163 RGD:4889469 NCBI chr10:63,153,656...63,188,377
Ensembl chr10:63,153,651...63,176,463
JBrowse link
G Slc8a1 solute carrier family 8 member A1 IEP RGD PMID:17612656 RGD:1642718 NCBI chr 6:4,244,076...4,564,262
Ensembl chr 6:4,258,991...4,520,604
JBrowse link
G Soat2 sterol O-acyltransferase 2 IEP RGD PMID:12563020 RGD:1598705 NCBI chr 7:143,754,892...143,767,989
Ensembl chr 7:143,754,892...143,767,989
JBrowse link
G Star steroidogenic acute regulatory protein IEP RGD PMID:16882930 RGD:1600074 NCBI chr16:71,036,204...71,040,847
Ensembl chr16:71,036,204...71,040,847
JBrowse link
G Stat1 signal transducer and activator of transcription 1 IDA RGD PMID:15454281 RGD:1600101 NCBI chr 9:54,287,540...54,327,958
Ensembl chr 9:54,287,541...54,484,533
JBrowse link
G Suox sulfite oxidase IDA RGD PMID:3404287 RGD:1600116 NCBI chr 7:3,098,228...3,102,179
Ensembl chr 7:3,098,245...3,102,142
JBrowse link
G Tbxa2r thromboxane A2 receptor IEP RGD PMID:14621185 RGD:1601435 NCBI chr 7:11,253,153...11,259,233
Ensembl chr 7:11,253,180...11,257,977
JBrowse link
G Tfrc transferrin receptor IEP RGD PMID:18340409 RGD:2292029 NCBI chr11:71,397,423...71,419,263
Ensembl chr11:71,397,383...71,419,223
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 IEP RGD PMID:11675406 RGD:1601602 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
G Tnfrsf11b TNF receptor superfamily member 11B IEP RGD PMID:16696921 RGD:1624172 NCBI chr 7:93,798,580...93,826,586
Ensembl chr 7:93,798,545...93,826,665
JBrowse link
G Ttpa alpha tocopherol transfer protein IEP RGD PMID:9868180 RGD:1600433 NCBI chr 5:34,007,926...34,029,315
Ensembl chr 5:34,007,920...34,028,452
JBrowse link
G Txn2 thioredoxin 2 IEP Brassica oleracea RGD PMID:18163565 RGD:2306160 NCBI chr 7:119,144,350...119,158,173
Ensembl chr 7:119,144,351...119,158,201
JBrowse link
G Ucp3 uncoupling protein 3 IEP RGD PMID:16962595 RGD:2313536 NCBI chr 1:165,482,912...165,495,895
Ensembl chr 1:165,482,155...165,496,206
JBrowse link
G Ugt1a1 UDP glucuronosyltransferase family 1 member A1 IEP RGD PMID:11299074 RGD:1600448 NCBI chr 9:95,295,701...95,302,822
Ensembl chr 9:95,161,157...95,302,822
JBrowse link
G Vcam1 vascular cell adhesion molecule 1 IEP RGD PMID:19199090 RGD:2313106 NCBI chr 2:219,071,193...219,090,931
Ensembl chr 2:219,071,193...219,097,619
JBrowse link
G Vldlr very low density lipoprotein receptor IEP RGD PMID:11882325 RGD:1625576 NCBI chr 1:245,236,819...245,273,688
Ensembl chr 1:245,237,736...245,269,205
JBrowse link
behavioral response to nutrient term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc16a1 solute carrier family 16 member 1 ISO (MGI:MGI:5545659|PMID:24367518) RGD PMID:24367518 MGI:MGI:5545659 NCBI chr 2:207,108,552...207,129,352
Ensembl chr 2:207,108,552...207,128,554
JBrowse link
cellular response to folic acid term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Folr1 folate receptor alpha ISO (PMID:14722620) RGD PMID:14722620 NCBI chr 1:166,934,457...166,945,864
Ensembl chr 1:166,934,460...166,943,592
JBrowse link
G Folr2 folate receptor beta IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:166,915,045...166,933,377
Ensembl chr 1:166,915,045...166,919,302
JBrowse link
cellular response to L-ascorbic acid term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eln elastin IEP RGD PMID:2859894 RGD:9585689 NCBI chr12:24,978,478...25,021,864
Ensembl chr12:24,978,483...25,021,863
JBrowse link
G Lep leptin IEP RGD PMID:20400526 RGD:5128594 NCBI chr 4:56,337,695...56,351,818
Ensembl chr 4:56,337,695...56,351,818
JBrowse link
cellular response to methionine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase IEP RGD PMID:1201245 RGD:6893692 NCBI chr17:66,210,444...66,295,014
Ensembl chr17:66,210,461...66,295,014
JBrowse link
cellular response to nutrient term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat2 acetyl-CoA acetyltransferase 2 IEP N-acetylcysteine RGD PMID:12563020 RGD:1598705 NCBI chr 1:47,972,399...47,992,654
Ensembl chr 1:47,972,399...47,992,653
JBrowse link
G Ccne1 cyclin E1 IEP RGD PMID:17979132 RGD:2289272 NCBI chr 1:94,485,830...94,495,112
Ensembl chr 1:94,485,832...94,494,980
JBrowse link
G Cdkn2b cyclin-dependent kinase inhibitor 2B ISO
IEA
(PMID:17597576)
GO_REF:0000107
RGD
Ensembl
PMID:17597576 GO_REF:0000107 NCBI chr 5:107,834,353...107,857,428
Ensembl chr 5:107,845,951...107,858,104
JBrowse link
G Cyp11b2 cytochrome P450, family 11, subfamily b, polypeptide 2 IEP potassium RGD PMID:16876110 RGD:4891413 NCBI chr 7:116,248,759...116,255,205
Ensembl chr 7:116,156,219...116,255,167
JBrowse link
G Dbi diazepam binding inhibitor, acyl-CoA binding protein IEP RGD PMID:15825833 RGD:2316268 NCBI chr13:36,147,667...36,156,076
Ensembl chr13:36,117,119...36,174,908
JBrowse link
G Hmox1 heme oxygenase 1 IEP RGD PMID:15531134 RGD:1582714 NCBI chr19:14,508,634...14,515,455
Ensembl chr19:14,508,616...14,515,456
JBrowse link
G Lpl lipoprotein lipase ISO (MGI:MGI:6282942|PMID:21986524) RGD PMID:21986524 MGI:MGI:6282942 NCBI chr16:22,537,687...22,561,487
Ensembl chr16:22,537,056...22,561,496
JBrowse link
G Pdk2 pyruvate dehydrogenase kinase 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5428826|PMID:22360721)
Ensembl
UniProt
RGD
PMID:22360721 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5428826 NCBI chr10:82,838,270...82,852,758
Ensembl chr10:82,839,153...82,852,660
JBrowse link
G Prdm4 PR/SET domain 4 IEP fetal calf serum RGD PMID:10485890 RGD:633619 NCBI chr 7:23,959,932...23,986,535
Ensembl chr 7:23,960,378...23,985,525
JBrowse link
G Scd4 stearoyl-coenzyme A desaturase 4 ISO (MGI:MGI:2673743|PMID:12815040) RGD PMID:12815040 MGI:MGI:2673743 NCBI chr 1:264,094,007...264,105,473
Ensembl chr 1:264,094,080...264,105,344
JBrowse link
G Tnks tankyrase IEP RGD PMID:25876076 RGD:13628743 NCBI chr16:60,925,093...61,067,192
Ensembl chr16:60,925,093...61,067,192
JBrowse link
G Xbp1 X-box binding protein 1 ISO (MGI:MGI:4442277|PMID:20348926) RGD PMID:20348926 MGI:MGI:4442277 NCBI chr14:85,753,736...85,758,820
Ensembl chr14:85,753,760...85,758,145
JBrowse link
cellular response to vitamin term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brip1 BRCA1 interacting protein C-terminal helicase 1 IEP RGD PMID:16771696 RGD:2326085 NCBI chr10:73,507,009...73,632,742
Ensembl chr10:73,507,100...73,629,581
JBrowse link
cellular response to vitamin A term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ltc4s leukotriene C4 synthase IEP RGD PMID:12767051 RGD:724432 NCBI chr10:35,736,486...35,743,088
Ensembl chr10:35,737,664...35,739,625
JBrowse link
cellular response to vitamin B1 term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mdm2 MDM2 proto-oncogene IEP RGD PMID:15656374 RGD:2317394 NCBI chr 7:60,719,060...60,743,618
Ensembl chr 7:60,719,066...60,743,328
JBrowse link
cellular response to vitamin B3 term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt1 sirtuin 1 IEP RGD PMID:23555824 RGD:10047117 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
cellular response to vitamin D term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 IEP RGD PMID:11108265 RGD:9681746 NCBI chr11:25,342,119...25,350,938
Ensembl chr11:25,342,126...25,350,974
JBrowse link
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 IEP RGD PMID:11277270 RGD:2317730 NCBI chr 7:41,114,606...41,223,138
Ensembl chr 7:41,114,697...41,220,579
JBrowse link
G Bglap bone gamma-carboxyglutamate protein IEP RGD PMID:6607920, PMID:3257212 RGD:2316174, RGD:6483560 NCBI chr 2:187,741,770...187,748,445
Ensembl chr 2:187,741,770...187,742,747
JBrowse link
G Casr calcium-sensing receptor IEP 1,25-dihydroxycholecalciferol (calcitriol) RGD PMID:21940515 RGD:7205697 NCBI chr11:67,188,204...67,262,261
Ensembl chr11:67,188,630...67,258,771
JBrowse link
G Fes FES proto-oncogene, tyrosine kinase ISO (PMID:28389358) RGD PMID:28389358 NCBI chr 1:142,174,648...142,183,884
Ensembl chr 1:142,174,648...142,183,884
JBrowse link
G Fgf23 fibroblast growth factor 23 IEP RGD PMID:23263654 RGD:10044209 NCBI chr 4:159,622,404...159,630,082
Ensembl chr 4:159,622,404...159,630,082
JBrowse link
G Fzd1 frizzled class receptor 1 IEP RGD PMID:1334084 RGD:61590 NCBI chr 4:26,470,864...26,475,262
Ensembl chr 4:26,470,864...26,475,262
JBrowse link
G Fzd2 frizzled class receptor 2 IEP RGD PMID:1334084 RGD:61590 NCBI chr10:90,550,147...90,552,057
Ensembl chr10:90,550,147...90,552,057
JBrowse link
G Gdap1 ganglioside-induced differentiation-associated-protein 1 IEP RGD PMID:25449168 RGD:12738378 NCBI chr 5:1,328,963...1,347,946
Ensembl chr 5:1,328,913...1,347,921
JBrowse link
G Il15 interleukin 15 IEP RGD PMID:15637289 RGD:2311387 NCBI chr19:23,542,606...23,624,366
Ensembl chr19:23,542,889...23,554,594
JBrowse link
G Itgb1 integrin subunit beta 1 IEP calcitriol RGD PMID:20304064 RGD:2325261 NCBI chr19:61,677,512...61,725,537
Ensembl chr19:61,677,542...61,725,535
JBrowse link
G Ltbp1 latent transforming growth factor beta binding protein 1 IEP RGD PMID:10025676 RGD:10412059 NCBI chr 6:21,203,502...21,600,441
Ensembl chr 6:21,203,502...21,600,451
JBrowse link
G Mmp1 matrix metallopeptidase 1 IEP RGD PMID:22064970 RGD:7207281 NCBI chr 8:5,703,206...5,723,593
Ensembl chr 8:5,703,206...5,723,591
JBrowse link
G Nos2 nitric oxide synthase 2 IEP RGD PMID:18534083 RGD:4891908 NCBI chr10:66,188,290...66,221,621
Ensembl chr10:66,189,786...66,313,190
JBrowse link
G Pdia3 protein disulfide isomerase family A, member 3 IDA RGD PMID:15862831 RGD:9999173 NCBI chr 3:113,376,983...113,400,707
Ensembl chr 3:113,376,983...113,400,707
JBrowse link
G Penk proenkephalin IEP RGD PMID:8584038 RGD:10003035 NCBI chr 5:17,056,412...17,061,762
Ensembl chr 5:17,056,419...17,061,837
JBrowse link
G Phex phosphate regulating endopeptidase homolog, X-linked IEP RGD PMID:15337762 RGD:11556251 NCBI chr  X:40,460,047...40,717,982
Ensembl chr  X:40,460,047...40,717,982
JBrowse link
G Ptn pleiotrophin IEP RGD PMID:21153232 RGD:9831436 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 IEA
ISO
GO_REF:0000107
(PMID:16149051)
Ensembl
RGD
PMID:16149051 GO_REF:0000107 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Sult2a1 sulfotransferase family 2A member 1 IDA RGD PMID:14978251 RGD:2317006 NCBI chr 1:76,558,721...76,614,315
Ensembl chr 1:76,252,329...76,780,230
JBrowse link
G Tnc tenascin C IEP RGD PMID:10502285 RGD:4889620 NCBI chr 5:79,789,686...79,874,555
Ensembl chr 5:79,789,671...79,874,671
JBrowse link
G Vdr vitamin D receptor IEP RGD PMID:9753201 RGD:8158092 NCBI chr 7:139,344,452...139,394,138
Ensembl chr 7:139,342,063...139,394,166
JBrowse link
cellular response to vitamin E term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen type I alpha 1 chain IEP RGD PMID:23722449 RGD:8552711 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Col2a1 collagen type II alpha 1 chain IEP RGD PMID:23722449 RGD:8552711 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Pawr pro-apoptotic WT1 regulator IEP RGD PMID:10428045 RGD:9835341 NCBI chr 7:51,273,764...51,353,700
Ensembl chr 7:51,273,771...51,353,068
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma IEP RGD PMID:11752099 RGD:8553036 NCBI chr 4:147,274,055...147,399,383
Ensembl chr 4:147,274,107...147,399,380
JBrowse link
cellular response to vitamin K term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl5 C-C motif chemokine ligand 5 IEP menadione (K3) RGD PMID:19291322 RGD:4889997 NCBI chr10:70,739,764...70,744,303
Ensembl chr10:70,739,800...70,744,315
JBrowse link
G Gas6 growth arrest specific 6 ISO
ISS
(PMID:16359517)
GO_REF:0000024
RGD
UniProt
PMID:16359517 GO_REF:0000024 NCBI chr16:81,213,364...81,243,824
Ensembl chr16:81,213,364...81,243,757
JBrowse link
G Postn periostin ISO (PMID:18450759)
(MGI:MGI:3804342|PMID:18450759)
RGD PMID:18450759 MGI:MGI:3804342 NCBI chr 2:143,656,820...143,688,087
Ensembl chr 2:143,656,793...143,688,087
JBrowse link
negative regulation of transcription from RNA polymerase II promoter by glucose term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 ISO (MGI:MGI:5142372|PMID:11875061) RGD PMID:11875061 MGI:MGI:5142372 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
negative regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kank2 KN motif and ankyrin repeat domains 2 ISO
IBA
(PMID:24671081)
PMID:21873635
RGD PMID:24671081, PMID:21873635 RGD:13792537 NCBI chr 8:22,792,000...22,821,459
Ensembl chr 8:22,791,995...22,821,397
JBrowse link
G Snai2 snail family transcriptional repressor 2 ISO (PMID:19502595) RGD PMID:19502595 NCBI chr11:90,404,421...90,406,730
Ensembl chr11:90,403,333...90,406,797
JBrowse link
positive regulation of transcription by glucose term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srf serum response factor IMP RGD PMID:20655308 RGD:5131625 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
positive regulation of transcription from RNA polymerase II promoter by galactose term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncoa1 nuclear receptor coactivator 1 ISO (PMID:10207113)
(MGI:MGI:5297786|PMID:16723356)
RGD PMID:10207113, PMID:16723356 MGI:MGI:5297786 NCBI chr 6:28,677,563...28,931,844
Ensembl chr 6:28,677,540...28,931,843
JBrowse link
positive regulation of transcription from RNA polymerase II promoter by glucose term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 ISO (MGI:MGI:5142372|PMID:11875061) RGD PMID:11875061 MGI:MGI:5142372 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Usf1 upstream transcription factor 1 ISO (PMID:7852331)
(MGI:MGI:1330677|PMID:9890958)
RGD PMID:7852331, PMID:9890958 MGI:MGI:1330677 NCBI chr13:89,797,750...89,805,561
Ensembl chr13:89,797,800...89,805,558
JBrowse link
G Usf2 upstream transcription factor 2, c-fos interacting ISO
IEA
(PMID:7852331)
GO_REF:0000107
(MGI:MGI:1330677|PMID:9890958)
RGD
Ensembl
PMID:7852331, PMID:9890958 GO_REF:0000107, MGI:MGI:1330677 NCBI chr 1:89,371,798...89,383,005
Ensembl chr 1:89,371,794...89,382,463
JBrowse link
positive regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 ISO (PMID:16549446) RGD PMID:16549446 NCBI chr 7:70,333,150...70,340,006
Ensembl chr 7:70,335,061...70,340,005
JBrowse link
G Mn1 MN1 proto-oncogene, transcriptional regulator ISO (PMID:15890672) RGD PMID:15890672 NCBI chr12:51,214,192...51,250,230
Ensembl chr12:51,214,192...51,250,230
JBrowse link
G Snw1 SNW domain containing 1 ISO (PMID:11514567), (PMID:9632709) RGD PMID:9632709, PMID:11514567 NCBI chr 6:111,483,698...111,507,782
Ensembl chr 6:111,483,703...111,507,782
JBrowse link
regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Med1 mediator complex subunit 1 ISO MGI:MGI:1861125 (MGI:MGI:3655015|PMID:16324150) RGD PMID:16324150 MGI:MGI:3655015 NCBI chr10:86,101,560...86,145,271
Ensembl chr10:86,103,600...86,144,880
JBrowse link
G Snw1 SNW domain containing 1 ISO (PMID:14985122) RGD PMID:14985122 NCBI chr 6:111,483,698...111,507,782
Ensembl chr 6:111,483,703...111,507,782
JBrowse link
G Trim24 tripartite motif-containing 24 ISO MGI:MGI:3772051 (MGI:MGI:3776949|PMID:18287084) RGD PMID:18287084 MGI:MGI:3776949 NCBI chr 4:65,632,278...65,684,746
Ensembl chr 4:65,637,407...65,684,743
JBrowse link
response to biotin term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hlcs holocarboxylase synthetase IEP
ISO
(PMID:17904341) RGD PMID:17904341, PMID:16359899 RGD:2313678 NCBI chr11:34,357,372...34,537,798
Ensembl chr11:34,352,287...34,526,931
JBrowse link
G Otc ornithine carbamoyltransferase IEP RGD PMID:8558326 RGD:4144076 NCBI chr  X:13,524,804...13,601,074
Ensembl chr  X:13,524,607...13,601,069
JBrowse link
response to cobalamin term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd40 CD40 molecule IEP RGD PMID:16716410 RGD:2313422 NCBI chr 3:161,519,789...161,534,943
Ensembl chr 3:161,519,743...161,534,704
JBrowse link
G Cd40lg CD40 ligand IEP RGD PMID:16716410 RGD:2313422 NCBI chr  X:159,703,703...159,714,886
Ensembl chr  X:159,703,578...159,716,562
JBrowse link
G Egfr epidermal growth factor receptor IEP RGD PMID:21185268 RGD:5131503 NCBI chr14:99,919,485...100,104,136
Ensembl chr14:99,919,485...100,098,796
JBrowse link
G Hp haptoglobin IEP RGD PMID:12769818 RGD:1643101 NCBI chr19:42,096,255...42,100,805
Ensembl chr19:42,097,995...42,100,804
JBrowse link
G Mt-cyb mitochondrially encoded cytochrome b IEP RGD PMID:7508436 RGD:2298965 NCBI chr MT:14,136...15,278
Ensembl chr MT:14,136...15,278
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit IEP RGD PMID:18183619 RGD:2298839 NCBI chr 1:220,992,770...221,003,249
Ensembl chr 1:220,992,770...221,003,249
JBrowse link
G Sds serine dehydratase IEP RGD PMID:17761010 RGD:2311256 NCBI chr12:41,620,429...41,627,741
Ensembl chr12:41,620,393...41,627,741
JBrowse link
response to folic acid term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcg2 ATP binding cassette subfamily G member 2 IEP RGD PMID:19552531 RGD:2316102 NCBI chr 4:88,765,441...88,890,268
Ensembl chr 4:88,832,178...88,890,621
JBrowse link
G Ascl1 achaete-scute family bHLH transcription factor 1 IEP RGD PMID:19001765 RGD:2314143 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Bche butyrylcholinesterase IDA RGD PMID:16442260 RGD:1599454 NCBI chr 2:171,104,476...171,196,186
Ensembl chr 2:171,100,140...171,196,395
JBrowse link
G Bcl2 BCL2, apoptosis regulator IEP RGD PMID:18156304 RGD:2290422 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Cbs cystathionine beta synthase ISO MGI:MGI:1857139 (MGI:MGI:1890086|PMID:10993757) RGD PMID:10993757 MGI:MGI:1890086 NCBI chr20:10,361,987...10,386,663
Ensembl chr20:10,361,988...10,386,751
JBrowse link
G Eef2 eukaryotic translation elongation factor 2 IEP RGD PMID:12899944 RGD:1599867 NCBI chr 7:11,401,501...11,406,771
Ensembl chr 7:11,401,501...11,406,771
JBrowse link
G Gpx1 glutathione peroxidase 1 IEP RGD PMID:16251605 RGD:2306623 NCBI chr 8:117,117,430...117,118,528
Ensembl chr 8:117,117,430...117,118,522
JBrowse link
G Gsn gelsolin IEP RGD PMID:12899944 RGD:1599867 NCBI chr 3:14,456,106...14,508,922
Ensembl chr 3:14,467,330...14,508,911
JBrowse link
G Hspa9 heat shock protein family A (Hsp70) member 9 IEP RGD PMID:16251605 RGD:2306623 NCBI chr18:27,731,072...27,749,235
Ensembl chr18:27,731,072...27,749,235
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:MGI:1861309 (MGI:MGI:3697543|PMID:17050573) RGD PMID:17050573 MGI:MGI:3697543 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase IEP RGD PMID:20051376 RGD:2316897 NCBI chr 1:209,237,255...209,464,189
Ensembl chr 1:209,237,233...209,464,190
JBrowse link
G Mog myelin oligodendrocyte glycoprotein IEP RGD PMID:20090312 RGD:9685541 NCBI chr20:2,003,871...2,014,284
Ensembl chr20:2,004,052...2,014,286
JBrowse link
G Mthfr methylenetetrahydrofolate reductase IEP RGD PMID:15313378 RGD:6893667 NCBI chr 5:164,844,642...164,864,360
Ensembl chr 5:164,845,925...164,860,910
JBrowse link
G Nrf1 nuclear respiratory factor 1 IEP RGD PMID:17709439 RGD:2302403 NCBI chr 4:57,335,732...57,445,317
Ensembl chr 4:57,378,069...57,445,341
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase IEP RGD PMID:20051376 RGD:2316897 NCBI chr 4:145,282,828...145,289,367
Ensembl chr 4:145,282,797...145,289,326
JBrowse link
G Timp3 TIMP metallopeptidase inhibitor 3 IEP RGD PMID:18156304 RGD:2290422 NCBI chr 7:23,543,125...23,594,170
Ensembl chr 7:23,544,215...23,594,133
JBrowse link
G Tyms thymidylate synthetase IEP RGD PMID:9528665 RGD:5133428 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564
JBrowse link
G Vegfa vascular endothelial growth factor A IEP RGD PMID:17482424 RGD:7421601 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
G Zfp354a zinc finger protein 354A IEP RGD PMID:8382778 RGD:1300202 NCBI chr10:36,586,495...36,600,172
Ensembl chr10:36,589,181...36,600,469
JBrowse link
response to L-ascorbic acid term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp5 acid phosphatase 5, tartrate resistant IEP RGD PMID:19110235 RGD:2315908 NCBI chr 8:23,142,733...23,149,067
Ensembl chr 8:23,142,734...23,148,396
JBrowse link
G Bcl2 BCL2, apoptosis regulator IEP RGD PMID:18758938 RGD:2311242 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Cat catalase IEP RGD PMID:20698742 RGD:9068891 NCBI chr 3:93,379,872...93,412,058
Ensembl chr 3:93,379,874...93,412,058
JBrowse link
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 IEP in PCB-treated rats RGD PMID:17280759 RGD:4891016 NCBI chr 8:62,798,317...62,809,848
Ensembl chr 8:62,779,875...62,809,893
JBrowse link
G Gstp1 glutathione S-transferase pi 1 IEP RGD PMID:9834927 RGD:2317836 NCBI chr 1:219,291,679...219,294,147
Ensembl chr 1:219,291,679...219,294,147
JBrowse link
G Hp haptoglobin IEP RGD PMID:9566989 RGD:1643102 NCBI chr19:42,096,255...42,100,805
Ensembl chr19:42,097,995...42,100,804
JBrowse link
G Hsd17b3 hydroxysteroid (17-beta) dehydrogenase 3 IEP in PCB-treated rats RGD PMID:17280759 RGD:4891016 NCBI chr17:1,579,319...1,610,745
Ensembl chr17:1,579,319...1,610,745
JBrowse link
G Hsd3b1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 IEP in PCB-treated rats RGD PMID:17280759 RGD:4891016
G Il1a interleukin 1 alpha IEP RGD PMID:18983910 RGD:2311086 NCBI chr 3:121,824,712...121,836,122
Ensembl chr 3:121,825,412...121,836,086
JBrowse link
G Il1b interleukin 1 beta IEP RGD PMID:18983910 RGD:2311086 NCBI chr 3:121,876,256...121,882,637
Ensembl chr 3:121,876,263...121,882,726
JBrowse link
G Itga2 integrin subunit alpha 2 IEP RGD PMID:9275042 RGD:2307414 NCBI chr 2:46,996,904...47,097,011
Ensembl chr 2:47,000,323...47,096,961
JBrowse link
G Sod2 superoxide dismutase 2 IEP RGD PMID:20122981 RGD:2317376 NCBI chr 1:47,914,757...47,921,587
Ensembl chr 1:47,914,759...47,921,587
JBrowse link
G Sparc secreted protein acidic and cysteine rich IEP RGD PMID:9495521 RGD:2300067 NCBI chr10:40,742,390...40,764,232
Ensembl chr10:40,742,400...40,764,185
JBrowse link
G Vwf von Willebrand factor IEP RGD PMID:14737039 RGD:1601646 NCBI chr 4:158,085,059...158,219,525
Ensembl chr 4:158,088,505...158,219,523
JBrowse link
response to vitamin term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase IEP vitamin C RGD PMID:9559098 RGD:4144791 NCBI chr 5:78,368,867...78,379,206
Ensembl chr 5:78,368,867...78,379,346
JBrowse link
G Hmbs hydroxymethylbilane synthase IEP vitamin C RGD PMID:9559098 RGD:4144791 NCBI chr 8:48,667,278...48,674,673
Ensembl chr 8:48,667,275...48,674,748
JBrowse link
G Nnt nicotinamide nucleotide transhydrogenase IEP RGD PMID:25761734 RGD:13513980 NCBI chr 2:52,189,523...52,283,095
Ensembl chr 2:52,189,529...52,282,548
JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 IEP biotin RGD PMID:11833042 RGD:2311192 NCBI chr12:9,496,044...9,501,211
Ensembl chr12:9,496,044...9,501,213
JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase IDA RGD PMID:7766014 RGD:1642377 NCBI chr10:46,339,821...46,404,640
Ensembl chr10:46,339,821...46,404,642
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 IEP choline RGD PMID:23413810 RGD:9491848 NCBI chr 2:196,495,867...196,527,412
Ensembl chr 2:196,495,867...196,527,127
JBrowse link
response to vitamin A term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP binding cassette subfamily B member 1A IEP RGD PMID:26729079 RGD:11041096 NCBI chr 4:22,339,829...22,517,642
Ensembl chr 4:22,133,521...22,425,515
JBrowse link
G Abcb1b ATP-binding cassette, subfamily B (MDR/TAP), member 1B IEP RGD PMID:26729079 RGD:11041096 NCBI chr 4:22,225,123...22,307,577
Ensembl chr 4:22,133,521...22,425,515
JBrowse link
G Ager advanced glycosylation end product-specific receptor IEP RGD PMID:22274401 RGD:7245566 NCBI chr20:4,363,152...4,366,079
Ensembl chr20:4,363,152...4,366,079
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 IEP RGD PMID:11169459 RGD:2306337 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Apoc3 apolipoprotein C3 IEP RGD PMID:7811230 RGD:1599187 NCBI chr 8:50,529,318...50,531,498
Ensembl chr 8:50,529,318...50,531,498
JBrowse link
G Arg1 arginase 1 IEP RGD PMID:18271400 RGD:4142841 NCBI chr 1:21,525,421...21,537,872
Ensembl chr 1:21,525,421...21,537,863
JBrowse link
G Bdnf brain-derived neurotrophic factor IEP RGD PMID:21188516 RGD:4891124 NCBI chr 3:100,768,637...100,819,216
Ensembl chr 3:100,768,637...100,819,210
JBrowse link
G Cat catalase IEP RGD PMID:23485553 RGD:9068476 NCBI chr 3:93,379,872...93,412,058
Ensembl chr 3:93,379,874...93,412,058
JBrowse link
G Cd44 CD44 molecule (Indian blood group) IEP RGD PMID:16804311 RGD:2289372 NCBI chr 3:92,695,083...92,783,820
Ensembl chr 3:92,696,313...92,783,658
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IEP Retinal or retinol RGD PMID:10381141 RGD:2306682 NCBI chr 8:62,472,087...62,478,122
Ensembl chr 8:62,472,095...62,478,147
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 IEP RGD PMID:19700416 RGD:6484694 NCBI chr 1:256,382,861...256,386,729
Ensembl chr 1:256,382,791...256,386,729
JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 IEP RGD PMID:19700416 RGD:6484694 NCBI chr 4:116,261,796...116,278,615
Ensembl chr 4:116,261,796...116,278,615
JBrowse link
G Dnmt1 DNA methyltransferase 1 IEP RGD PMID:23333085 RGD:9588314 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha IEP RGD PMID:23333085 RGD:9588314 NCBI chr 6:28,205,375...28,346,052
Ensembl chr 6:28,235,695...28,340,577
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta IEP RGD PMID:23333085 RGD:9588314 NCBI chr 3:149,131,541...149,170,061
Ensembl chr 3:149,131,785...149,208,786
JBrowse link
G Epo erythropoietin IEP RGD PMID:9027729 RGD:2313658 NCBI chr12:22,274,828...22,278,268
Ensembl chr12:22,274,828...22,278,266
JBrowse link
G Fads1 fatty acid desaturase 1 IEP RGD PMID:11414679 RGD:632758 NCBI chr 1:226,234,034...226,249,118
Ensembl chr 1:226,234,074...226,249,138
JBrowse link
G Gata4 GATA binding protein 4 IEP RGD PMID:23333085 RGD:9588314 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Gsr glutathione-disulfide reductase IEP RGD PMID:22984325 RGD:7257533 NCBI chr16:62,197,617...62,239,987
Ensembl chr16:62,197,617...62,241,361
JBrowse link
G Hamp hepcidin antimicrobial peptide IEP RGD PMID:24998947 RGD:11041625 NCBI chr 1:89,368,021...89,369,960
Ensembl chr 1:89,368,021...89,369,960
JBrowse link
G Lrat lecithin retinol acyltransferase IEP RGD PMID:19700416 RGD:6484694 NCBI chr 2:181,896,304...181,905,366
Ensembl chr 2:181,896,305...181,905,300
JBrowse link
G Map1b microtubule-associated protein 1B IEP RGD PMID:12414111 RGD:2304021 NCBI chr 2:29,675,391...29,768,750
Ensembl chr 2:29,675,391...29,768,750
JBrowse link
G Mmp9 matrix metallopeptidase 9 IEP RGD PMID:17164434 RGD:1642048 NCBI chr 3:161,413,410...161,421,473
Ensembl chr 3:161,413,298...161,421,520
JBrowse link
G Muc2 mucin 2, oligomeric mucus/gel-forming IEP RGD PMID:18495461 RGD:2324677 NCBI chr 1:214,663,929...214,693,197 JBrowse link
G Muc3 mucin 3, intestinal IEP RGD PMID:18495461 RGD:2324677 NCBI chr12:22,535,663...22,584,775 JBrowse link
G Muc4 mucin 4, cell surface associated IEP RGD PMID:10634605 RGD:2303747 NCBI chr11:71,242,973...71,285,217
Ensembl chr11:71,243,334...71,284,939
JBrowse link
G Muc5ac mucin 5AC, oligomeric mucus/gel-forming IEP RGD PMID:10634605 RGD:2303747 NCBI chr 1:214,725,482...214,756,653 JBrowse link
G Pitx2 paired-like homeodomain 2 IEP RGD PMID:18955041 RGD:5131996 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Ppard peroxisome proliferator-activated receptor delta IEP RGD PMID:19342198 RGD:2324880 NCBI chr20:7,818,289...7,883,482
Ensembl chr20:7,818,289...7,885,333
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma IEP RGD PMID:18384703 RGD:2301891 NCBI chr 4:147,274,055...147,399,383
Ensembl chr 4:147,274,107...147,399,380
JBrowse link
G Rara retinoic acid receptor, alpha IEP RGD PMID:18384703 RGD:2301891 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210
JBrowse link
G Rbp1 retinol binding protein 1 ISO MGI:MGI:2181412 (MGI:MGI:1931374|PMID:11222375) RGD PMID:11222375 MGI:MGI:1931374 NCBI chr 8:106,449,321...106,470,842
Ensembl chr 8:106,449,321...106,470,842
JBrowse link
G Rxra retinoid X receptor alpha IEP RGD PMID:16180333 RGD:1643110 NCBI chr 3:6,272,560...6,295,354
Ensembl chr 3:6,211,789...6,295,908
JBrowse link
G Serpina7 serpin family A member 7 IDA RGD PMID:6785400 RGD:2312335 NCBI chr  X:110,226,565...110,232,202
Ensembl chr  X:110,226,572...110,232,179
JBrowse link
G Sftpa1 surfactant protein A1 IEP RGD PMID:10385596 RGD:4144157 NCBI chr16:18,716,019...18,719,404
Ensembl chr16:18,716,019...18,719,403
JBrowse link
G Sftpb surfactant protein B IEP RGD PMID:10385596 RGD:4144157 NCBI chr 4:100,166,855...100,175,941
Ensembl chr 4:100,166,863...100,175,938
JBrowse link
G Sftpc surfactant protein C IEP RGD PMID:10385596 RGD:4144157 NCBI chr15:52,211,538...52,214,480
Ensembl chr15:52,211,544...52,214,616
JBrowse link
G Si sucrase-isomaltase IEP RGD PMID:15309444 RGD:1625547 NCBI chr 2:170,220,794...170,301,348
Ensembl chr 2:170,221,245...170,301,348
JBrowse link
G Slc30a4 solute carrier family 30 member 4 IEP RGD PMID:12421840 RGD:2299952 NCBI chr 3:114,805,919...114,828,154
Ensembl chr 3:114,805,922...114,828,154
JBrowse link
G Slc34a1 solute carrier family 34 member 1 IEP RGD PMID:20507281 RGD:7243129 NCBI chr17:9,747,766...9,762,739
Ensembl chr17:9,747,752...9,762,813
JBrowse link
G Tshb thyroid stimulating hormone subunit beta IEP RGD PMID:17311942 RGD:1624303 NCBI chr 2:205,207,799...205,215,199
Ensembl chr 2:205,207,799...205,212,681
JBrowse link
G Tyms thymidylate synthetase IEP RGD PMID:10395942 RGD:5133444 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564
JBrowse link
G Vegfa vascular endothelial growth factor A IEP RGD PMID:23106861 RGD:7483561 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
response to vitamin B1 term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase IEP RGD PMID:20088549 RGD:4144199 NCBI chr 5:78,368,867...78,379,206
Ensembl chr 5:78,368,867...78,379,346
JBrowse link
G Tspo translocator protein IEP RGD PMID:10517697 RGD:2317171 NCBI chr 7:124,460,358...124,470,610
Ensembl chr 7:124,460,358...124,470,609
JBrowse link
response to vitamin B2 term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cebpa CCAAT/enhancer binding protein alpha IEP RGD PMID:16856317 RGD:1625375 NCBI chr 1:91,363,492...91,366,164
Ensembl chr 1:91,363,492...91,366,164
JBrowse link
G Mthfr methylenetetrahydrofolate reductase IEP RGD PMID:3676170 RGD:2317124 NCBI chr 5:164,844,642...164,864,360
Ensembl chr 5:164,845,925...164,860,910
JBrowse link
response to vitamin B3 term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angpt1 angiopoietin 1 IEP RGD PMID:17557352 RGD:1643100 NCBI chr 7:81,338,327...81,592,459
Ensembl chr 7:81,342,280...81,592,206
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IEP RGD PMID:19420110 RGD:2306994 NCBI chr10:69,412,065...69,413,863
Ensembl chr10:69,412,017...69,413,870
JBrowse link
G Tp53 tumor protein p53 IEP RGD PMID:17516866 RGD:2290576 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
response to vitamin B6 term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kynu kynureninase ISO (PMID:1939450) RGD PMID:1939450 NCBI chr 3:28,416,926...28,566,939
Ensembl chr 3:28,416,954...28,566,928
JBrowse link
G Serpina3n serine (or cysteine) peptidase inhibitor, clade A, member 3N IEP RGD PMID:21462331 RGD:8662394 NCBI chr 6:128,073,344...128,080,878
Ensembl chr 6:127,941,526...128,080,889
JBrowse link
response to vitamin D term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP binding cassette subfamily B member 1A IEP RGD PMID:20013813 RGD:2315563 NCBI chr 4:22,339,829...22,517,642
Ensembl chr 4:22,133,521...22,425,515
JBrowse link
G Alpl alkaline phosphatase, biomineralization associated ISO (PMID:17023519) RGD PMID:17023519 NCBI chr 5:156,086,496...156,141,513
Ensembl chr 5:156,086,497...156,141,537
JBrowse link
G Bglap bone gamma-carboxyglutamate protein ISO (PMID:17023519) RGD PMID:17023519 NCBI chr 2:187,741,770...187,748,445
Ensembl chr 2:187,741,770...187,742,747
JBrowse link
G Bmp7 bone morphogenetic protein 7 IEP RGD PMID:17554252 RGD:2289035 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Cd4 Cd4 molecule IEP RGD PMID:8759780 RGD:10058969 NCBI chr 4:157,381,862...157,408,357
Ensembl chr 4:157,383,052...157,408,176
JBrowse link
G Crym crystallin, mu IEP RGD PMID:2809492 RGD:2303730 NCBI chr 1:189,944,895...189,960,069
Ensembl chr 1:189,944,895...189,960,073
JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 IEP RGD PMID:15637289 RGD:2311387 NCBI chr14:17,210,733...17,212,930
Ensembl chr14:17,210,733...17,212,930
JBrowse link
G Cyp24a1 cytochrome P450, family 24, subfamily a, polypeptide 1 ISO
IBA
(PMID:16720713)
PMID:21873635
RGD PMID:16720713, PMID:21873635 RGD:13792537 NCBI chr 3:168,097,484...168,111,920
Ensembl chr 3:168,097,485...168,111,920
JBrowse link
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 IDA
IBA
ISO
PMID:21873635
(MGI:MGI:1097206|PMID:9295274)
(PMID:16549446)
RGD PMID:9295274, PMID:16549446, PMID:3000565, PMID:21873635 MGI:MGI:1097206, RGD:2307325, RGD:13792537 NCBI chr 7:70,333,150...70,340,006
Ensembl chr 7:70,335,061...70,340,005
JBrowse link
G Ggcx gamma-glutamyl carboxylase IEP RGD PMID:3840747 RGD:11040515 NCBI chr 4:100,277,345...100,293,097
Ensembl chr 4:100,277,391...100,293,250
JBrowse link
G Il1b interleukin 1 beta IEP RGD PMID:17621647 RGD:1626651 NCBI chr 3:121,876,256...121,882,637
Ensembl chr 3:121,876,263...121,882,726
JBrowse link
G Insr insulin receptor IEP 1,25-dihydroxyvitamin D3, in diabetic rats RGD PMID:18638371 RGD:2307025 NCBI chr12:1,682,527...1,816,414
Ensembl chr12:1,680,957...1,816,414
JBrowse link
G Kl Klotho IEP RGD PMID:20631679 RGD:10403078 NCBI chr12:942,974...987,206
Ensembl chr12:943,006...987,551
JBrowse link
G LOC100909462 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Lrp2 LDL receptor related protein 2 IEP RGD PMID:9541123 RGD:1641848 NCBI chr 3:55,665,153...55,822,484
Ensembl chr 3:55,665,145...55,822,551
JBrowse link
G Phex phosphate regulating endopeptidase homolog, X-linked IEP RGD PMID:14693675 RGD:11556273 NCBI chr  X:40,460,047...40,717,982
Ensembl chr  X:40,460,047...40,717,982
JBrowse link
G Pla2g4a phospholipase A2 group IVA IEP RGD PMID:15225789 RGD:1642467 NCBI chr13:67,062,252...67,206,688
Ensembl chr13:66,988,937...67,206,693
JBrowse link
G Prkcb protein kinase C, beta IEP RGD PMID:10206343 RGD:1625620 NCBI chr 1:192,233,569...192,575,339
Ensembl chr 1:192,233,910...192,574,831
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 IEP RGD PMID:18348265 RGD:2300284 NCBI chr13:67,351,230...67,356,920
Ensembl chr13:67,351,087...67,359,335
JBrowse link
G Pth parathyroid hormone IEP RGD PMID:22926202 RGD:7242796 NCBI chr 1:178,215,829...178,218,761
Ensembl chr 1:178,215,829...178,218,761
JBrowse link
G Rxra retinoid X receptor alpha IEP RGD PMID:12048211 RGD:625496 NCBI chr 3:6,272,560...6,295,354
Ensembl chr 3:6,211,789...6,295,908
JBrowse link
G Slc8a2 solute carrier family 8 member A2 IEP RGD PMID:20113508 RGD:2316972 NCBI chr 1:78,029,555...78,054,042
Ensembl chr 1:78,025,995...78,060,111
JBrowse link
G Spp1 secreted phosphoprotein 1 ISO (PMID:16720713) RGD PMID:16720713 NCBI chr14:6,673,686...6,679,965
Ensembl chr14:6,673,686...6,679,901
JBrowse link
G Stc1 stanniocalcin 1 IEP RGD PMID:11702003 RGD:2324701 NCBI chr15:50,891,137...50,901,791
Ensembl chr15:50,891,127...50,903,162
JBrowse link
G Stc2 stanniocalcin 2 IEP RGD PMID:10508929 RGD:634221 NCBI chr10:16,542,909...16,552,675
Ensembl chr10:16,542,882...16,553,295
JBrowse link
G Tgfb1 transforming growth factor, beta 1 IEP RGD PMID:11956143, PMID:24613393 RGD:2302111, RGD:11073674 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tgfb2 transforming growth factor, beta 2 IEP RGD PMID:11956143 RGD:2302111 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tpcn2 two pore segment channel 2 IEP RGD PMID:20197420 RGD:9585651 NCBI chr 1:218,419,182...218,448,902
Ensembl chr 1:218,419,184...218,448,877
JBrowse link
G Trim25 tripartite motif-containing 25 IEP RGD PMID:10425199 RGD:1300518 NCBI chr10:76,343,847...76,362,159
Ensembl chr10:76,343,847...76,362,145
JBrowse link
G Tyr tyrosinase IEP RGD PMID:6175546 RGD:8694330 NCBI chr 1:151,012,598...151,106,802
Ensembl chr 1:151,012,598...151,106,802
JBrowse link
G Vim vimentin IEP RGD PMID:18687349 RGD:6480443 NCBI chr17:80,882,715...80,891,200
Ensembl chr17:80,882,666...80,891,212
JBrowse link
response to vitamin E term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase IDA RGD PMID:16716042 RGD:1624294 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
G Alad aminolevulinate dehydratase IEP in lead-treated rats RGD PMID:17572058 RGD:4144165 NCBI chr 5:78,368,867...78,379,206
Ensembl chr 5:78,368,867...78,379,346
JBrowse link
G Arg1 arginase 1 IEP RGD PMID:14624471 RGD:4143267 NCBI chr 1:21,525,421...21,537,872
Ensembl chr 1:21,525,421...21,537,863
JBrowse link
G Arg2 arginase 2 IEP RGD PMID:14624471 RGD:4143267 NCBI chr 6:102,311,097...102,338,406
Ensembl chr 6:102,311,116...102,338,520
JBrowse link
G Bcl2 BCL2, apoptosis regulator IEP RGD PMID:26261574 RGD:11085403 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Becn1 beclin 1 IEP RGD PMID:19138675 RGD:6483096 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297
JBrowse link
G Cat catalase IEP RGD PMID:19641679, PMID:19914224 RGD:5130868, RGD:9068475 NCBI chr 3:93,379,872...93,412,058
Ensembl chr 3:93,379,874...93,412,058
JBrowse link
G Ccnd1 cyclin D1 IEP RGD PMID:17015179 RGD:2289141 NCBI chr 1:218,090,750...218,100,447
Ensembl chr 1:218,090,750...218,100,325
JBrowse link
G Ccne1 cyclin E1 IEP RGD PMID:16298738 RGD:2289285 NCBI chr 1:94,485,830...94,495,112
Ensembl chr 1:94,485,832...94,494,980
JBrowse link
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 IEP in PCB-treated rats RGD PMID:17280759 RGD:4891016 NCBI chr 8:62,798,317...62,809,848
Ensembl chr 8:62,779,875...62,809,893
JBrowse link
G Eif2ak2 eukaryotic translation initiation factor 2-alpha kinase 2 IPI RGD PMID:17953670 RGD:2301732 NCBI chr 6:1,428,845...1,466,193
Ensembl chr 6:1,428,834...1,466,201
JBrowse link
G Fkbp1b FKBP prolyl isomerase 1B IEP RGD PMID:18611397 RGD:2302078 NCBI chr 6:29,975,863...29,987,252
Ensembl chr 6:29,977,797...29,987,451
JBrowse link
G Gstt1 glutathione S-transferase theta 1 IEP RGD PMID:9855024 RGD:7794855 NCBI chr20:13,799,102...13,816,527
Ensembl chr20:13,799,102...13,816,526
JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 IEP RGD PMID:15753162 RGD:2326153 NCBI chr 2:52,427,351...52,445,082
Ensembl chr 2:52,431,601...52,445,055
JBrowse link
G Hsd17b3 hydroxysteroid (17-beta) dehydrogenase 3 IEP in PCB-treated rats RGD PMID:17280759 RGD:4891016 NCBI chr17:1,579,319...1,610,745
Ensembl chr17:1,579,319...1,610,745
JBrowse link
G Hsd3b1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 IEP in PCB-treated rats RGD PMID:17280759 RGD:4891016
G Igf1r insulin-like growth factor 1 receptor IEP RGD PMID:17447016 RGD:2311524 NCBI chr 1:128,924,921...129,213,816
Ensembl chr 1:128,924,966...129,206,516
JBrowse link
G Lep leptin IEP RGD PMID:20404018 RGD:5128593 NCBI chr 4:56,337,695...56,351,818
Ensembl chr 4:56,337,695...56,351,818
JBrowse link
G Mef2c myocyte enhancer factor 2C IEP RGD PMID:16534476 RGD:5131617 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Mif macrophage migration inhibitory factor IEP RGD PMID:10609875 RGD:1642014 NCBI chr20:13,715,219...13,732,980
Ensembl chr20:13,732,198...13,732,859
JBrowse link
G Nos1 nitric oxide synthase 1 IEP RGD PMID:17200156 RGD:1642147 NCBI chr12:44,214,949...44,405,530
Ensembl chr12:44,213,943...44,520,341
JBrowse link
G Orm1 orosomucoid 1 IEP RGD PMID:11444866 RGD:1601045 NCBI chr 5:79,179,668...79,182,820
Ensembl chr 5:79,179,417...79,182,820
JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 IEP RGD PMID:15247049 RGD:11039057 NCBI chr10:105,792,779...105,795,986
Ensembl chr10:105,792,779...105,795,958
JBrowse link
response to vitamin K term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bglap bone gamma-carboxyglutamate protein IEP RGD PMID:21944271 RGD:6483564 NCBI chr 2:187,741,770...187,748,445
Ensembl chr 2:187,741,770...187,742,747
JBrowse link
G F5 coagulation factor V IEP RGD PMID:658784 RGD:11564341 NCBI chr13:82,479,997...82,535,540
Ensembl chr13:82,479,998...82,535,534
JBrowse link
G F7 coagulation factor VII IEP RGD PMID:3379837 RGD:2312317 NCBI chr16:81,824,610...81,834,923
Ensembl chr16:81,824,111...81,834,945
JBrowse link
G Ggcx gamma-glutamyl carboxylase IEP RGD PMID:8702425 RGD:2316484 NCBI chr 4:100,277,345...100,293,097
Ensembl chr 4:100,277,391...100,293,250
JBrowse link
vitamin D receptor signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pim1 Pim-1 proto-oncogene, serine/threonine kinase ISO (PMID:22720752) RGD PMID:22720752 NCBI chr20:8,165,423...8,169,557
Ensembl chr20:8,165,307...8,169,555
JBrowse link
G Vdr vitamin D receptor IEA
ISO
GO_REF:0000107
(PMID:16549446), (PMID:28698609)
Ensembl
RGD
PMID:16549446, PMID:28698609 GO_REF:0000107 NCBI chr 7:139,344,452...139,394,138
Ensembl chr 7:139,342,063...139,394,166
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    response to stimulus 10583
      response to chemical 6342
        response to nutrient 311
          behavioral response to nutrient + 1
          cellular response to nutrient + 63
          detection of nutrient + 0
          response to vitamin + 179
Path 2
Term Annotations click to browse term
  biological_process 20028
    response to stimulus 10583
      response to external stimulus 3204
        response to extracellular stimulus 763
          response to nutrient levels 732
            response to nutrient 311
              behavioral response to nutrient + 1
              cellular response to nutrient + 63
              detection of nutrient + 0
              response to vitamin + 179
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.