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ONTOLOGY REPORT - ANNOTATIONS


Term:phototransduction
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Accession:GO:0007602 term browser browse the term
Definition:The sequence of reactions within a cell required to convert absorbed photons into a molecular signal.
Synonyms:narrow_synonym: phototransduction, visible light, light adaptation;   phototrophin mediated phototransduction
 related_synonym: opsin
 xref: Wikipedia:Visual_phototransduction


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phototransduction term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arrb1 arrestin, beta 1 ISO MGI:MGI:2388373 (MGI:MGI:3772638|PMID:11853756) RGD PMID:11853756 MGI:MGI:3772638 NCBI chr 1:164,502,099...164,573,947
Ensembl chr 1:164,502,389...164,593,139
JBrowse link
G Asic2 acid sensing ion channel subunit 2 ISO
IEA
MGI:MGI:3043849 (MGI:MGI:3042539|PMID:14762118)
GO_REF:0000107
RGD
Ensembl
PMID:14762118 GO_REF:0000107, MGI:MGI:3042539 NCBI chr10:68,247,800...69,347,223
Ensembl chr10:68,248,655...68,517,564
JBrowse link
G Cabp4 calcium binding protein 4 ISO MGI:MGI:3056615 (MGI:MGI:3609280|PMID:16249514) RGD PMID:16249514 MGI:MGI:3609280 NCBI chr 1:219,383,452...219,388,009
Ensembl chr 1:219,383,452...219,388,009
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO MGI:MGI:3527896 (MGI:MGI:3527312|PMID:15634774) RGD PMID:15634774 MGI:MGI:3527312 NCBI chr19:10,142,440...10,206,618
Ensembl chr19:10,142,496...10,206,681
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO MGI:MGI:2152779 (MGI:MGI:1928441|PMID:11095744), (MGI:MGI:3609280|PMID:16249514), (MGI:MGI:3615719|PMID:15073279), (MGI:MGI:3757777|PMID:17881533), (MGI:MGI:3772638|PMID:11853756), (MGI:MGI:3778702|PMID:18367617) RGD PMID:11095744, PMID:11853756, PMID:15073279, PMID:16249514, PMID:17881533, PMID:18367617 MGI:MGI:1928441, MGI:MGI:3609280, MGI:MGI:3615719, MGI:MGI:3757777, MGI:MGI:3772638, MGI:MGI:3778702 NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO MGI:MGI:3588845 (MGI:MGI:3761397|PMID:17408617), (MGI:MGI:3772743|PMID:18171936) RGD PMID:17408617, PMID:18171936 MGI:MGI:3761397, MGI:MGI:3772743 NCBI chr 2:210,880,754...210,890,765
Ensembl chr 2:210,880,777...210,889,881
JBrowse link
G Gngt1 G protein subunit gamma transducin 1 ISO MGI:MGI:3783323 (MGI:MGI:3778702|PMID:18367617) RGD PMID:18367617 MGI:MGI:3778702 NCBI chr 4:28,972,339...28,975,419
Ensembl chr 4:28,972,434...28,975,419
JBrowse link
G Gpr88 G-protein coupled receptor 88 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:219,258,346...219,263,819
Ensembl chr 2:219,258,347...219,262,901
JBrowse link
G Guca1a guanylate cyclase activator 1A ISO MGI:MGI:2664159 (MGI:MGI:2664110|PMID:11493703), (MGI:MGI:3584028|PMID:15173221) RGD PMID:11493703, PMID:15173221 MGI:MGI:2664110, MGI:MGI:3584028 NCBI chr 9:15,609,804...15,620,030
Ensembl chr 9:15,609,804...15,620,029
JBrowse link
G Guca1b guanylate cyclase activator 1B ISO MGI:MGI:2664160 (MGI:MGI:2664110|PMID:11493703), (MGI:MGI:3584028|PMID:15173221) RGD PMID:11493703, PMID:15173221 MGI:MGI:2664110, MGI:MGI:3584028 NCBI chr 9:15,621,083...15,629,017
Ensembl chr 9:15,621,083...15,629,017
JBrowse link
G Opn1mw opsin 1, medium wave sensitive IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:156,569,683...156,589,907
Ensembl chr  X:156,569,683...156,589,907
JBrowse link
G Opn1sw opsin 1, short wave sensitive IEA
IBA
GO_REF:0000043
PMID:21873635
UniProt PMID:21873635 GO_REF:0000043, RGD:13792537 NCBI chr 4:56,653,840...56,656,980
Ensembl chr 4:56,653,844...56,656,980
JBrowse link
G Opn3 opsin 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:93,716,481...93,746,994
Ensembl chr13:93,716,481...93,746,994
JBrowse link
G Opn4 opsin 4 IDA
IBA
ISO
PMID:21873635
(MGI:MGI:2667269|PMID:12808468)
(PMID:15674244)
RGD PMID:12808468, PMID:15674244, PMID:11834834, PMID:21873635 MGI:MGI:2667269, RGD:633348, RGD:13792537 NCBI chr16:10,943,353...10,966,602
Ensembl chr16:10,943,341...10,952,549
JBrowse link
G Opn5 opsin 5 ISO
IBA
(MGI:MGI:6359287|PMID:30936473)
PMID:21873635
RGD PMID:30936473, PMID:21873635 MGI:MGI:6359287, RGD:13792537 NCBI chr 9:21,045,457...21,092,517
Ensembl chr 9:21,045,457...21,093,172
JBrowse link
G Plcb4 phospholipase C, beta 4 NAS RGD PMID:7688223 RGD:633574 NCBI chr 3:128,601,163...128,971,720
Ensembl chr 3:128,756,799...128,971,746
JBrowse link
G Rcvrn recoverin ISO MGI:MGI:3584102 (MGI:MGI:3584028|PMID:15173221) RGD PMID:15173221 MGI:MGI:3584028 NCBI chr10:54,246,250...54,253,996
Ensembl chr10:54,246,250...54,253,996
JBrowse link
G Rgr retinal G protein coupled receptor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:14,286,323...14,300,972
Ensembl chr16:14,286,323...14,300,951
JBrowse link
G Rho rhodopsin ISO
IBA
IEA
MGI:MGI:2181812 (MGI:MGI:3655007|PMID:16723493)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:16723493, PMID:21873635 GO_REF:0000107, MGI:MGI:3655007, RGD:13792537 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:235,237,422...235,250,474
Ensembl chr 2:235,237,414...235,249,575
JBrowse link
adaptation of rhodopsin mediated signaling term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh11 retinol dehydrogenase 11 ISO MGI:MGI:3586379 (MGI:MGI:3584215|PMID:15790565) RGD PMID:15790565 MGI:MGI:3584215 NCBI chr 6:102,356,498...102,372,618
Ensembl chr 6:102,356,492...102,372,611
JBrowse link
G Rs1 retinoschisin 1 ISO MGI:MGI:3056058 (MGI:MGI:3055638|PMID:15326152) RGD PMID:15326152 MGI:MGI:3055638 NCBI chr  X:35,749,957...35,777,243
Ensembl chr  X:35,749,957...35,777,243
JBrowse link
phototransduction, UV term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Opn5 opsin 5 ISO (PMID:22043319)
(MGI:MGI:6230806|PMID:22043319)
RGD PMID:22043319 MGI:MGI:6230806 NCBI chr 9:21,045,457...21,092,517
Ensembl chr 9:21,045,457...21,093,172
JBrowse link
phototransduction, visible light term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 ISO MGI:MGI:3054784 (MGI:MGI:3054118|PMID:15365173) RGD PMID:15365173 MGI:MGI:3054118 NCBI chr10:58,599,690...58,631,194
Ensembl chr10:58,599,856...58,608,907
JBrowse link
G Chrm1 cholinergic receptor, muscarinic 1 ISO (PMID:12196552) RGD PMID:12196552 NCBI chr 1:224,869,087...224,885,101
Ensembl chr 1:224,882,439...224,884,205
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (PMID:17584859) RGD PMID:17584859 NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
JBrowse link
G Pde6c phosphodiesterase 6C ISO MGI:MGI:2657247 (MGI:MGI:3655007|PMID:16723493) RGD PMID:16723493 MGI:MGI:3655007 NCBI chr 1:256,822,099...256,885,879
Ensembl chr 1:256,822,334...256,877,810
JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin IDA RGD PMID:2525480 RGD:6893558 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
regulation of rhodopsin mediated signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 ISO MGI:MGI:3054784|MGI:MGI:3054793 (MGI:MGI:3054118|PMID:15365173), (MGI:MGI:3054134|PMID:15365178) RGD PMID:15365173, PMID:15365178 MGI:MGI:3054118, MGI:MGI:3054134 NCBI chr10:58,599,690...58,631,194
Ensembl chr10:58,599,856...58,608,907
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 IEA
ISO
ISS
GO_REF:0000107
(PMID:15946941)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:15946941 GO_REF:0000024, GO_REF:0000107 NCBI chr16:81,153,489...81,165,442
Ensembl chr16:81,153,489...81,165,442
JBrowse link
rhodopsin mediated signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 IMP RGD PMID:11931744 RGD:1599009 NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 TAS RGD PMID:9147475 RGD:729748 NCBI chr16:81,153,489...81,165,442
Ensembl chr16:81,153,489...81,165,442
JBrowse link
G Opn4 opsin 4 ISO (MGI:MGI:4438311|PMID:19793992) RGD PMID:19793992 MGI:MGI:4438311 NCBI chr16:10,943,353...10,966,602
Ensembl chr16:10,943,341...10,952,549
JBrowse link
G Pcp2 Purkinje cell protein 2 ISO MGI:MGI:3579782 (MGI:MGI:3817370|PMID:18768681) RGD PMID:18768681 MGI:MGI:3817370 NCBI chr12:2,172,378...2,174,674
Ensembl chr12:2,172,378...2,174,131
JBrowse link
G Rho rhodopsin IDA RGD PMID:8814134 RGD:6893595 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    signaling 7588
      signal transduction 7015
        phototransduction 27
          UV-A, blue light phototransduction 0
          phototransduction, UV 1
          phototransduction, visible light + 10
          red, far-red light phototransduction 1
          rhodopsin mediated signaling pathway + 8
Path 2
Term Annotations click to browse term
  biological_process 20014
    response to stimulus 10568
      response to abiotic stimulus 1506
        response to radiation 532
          response to light stimulus 344
            detection of light stimulus 50
              phototransduction 27
                UV-A, blue light phototransduction 0
                phototransduction, UV 1
                phototransduction, visible light + 10
                red, far-red light phototransduction 1
                rhodopsin mediated signaling pathway + 8
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.