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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA binding, bending
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Accession:GO:0008301 term browser browse the term
Definition:The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
Synonyms:exact_synonym: DNA bending activity;   DNA bending involving DNA binding


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DNA binding, bending term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXC1 forkhead box C1 IEA Ensembl GO_REF:0000107 NCBI chr 7:837,088...840,593
Ensembl chr 7:837,171...838,805
JBrowse link
G FOXD1 forkhead box D1 IEA Ensembl GO_REF:0000107 NCBI chr 2:82,607,113...82,612,005
Ensembl chr 2:82,607,848...82,609,248
JBrowse link
G GATA1 GATA binding protein 1 ISO (MGI:MGI:4946306|PMID:21436399) MGI PMID:21436399 MGI:MGI:4946306 NCBI chr  X:42,898,431...42,905,939
Ensembl chr  X:42,898,442...42,905,976
JBrowse link
G HHEX hematopoietically expressed homeobox IEA Ensembl GO_REF:0000107 NCBI chr14:104,194,424...104,199,684
Ensembl chr14:104,194,343...104,200,221
JBrowse link
G HMGA2 high mobility group AT-hook 2 ISO (PMID:14627817)
(PMID:20108983)
UniProtKB PMID:14627817, PMID:20108983 NCBI chr 5:30,188,521...30,329,635 JBrowse link
G HMGB1 high mobility group box 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:7,195,556...7,321,071 JBrowse link
G HMGB2 high mobility group box 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:16,709,966...16,712,288
Ensembl chr14:16,710,047...16,717,126
JBrowse link
G HMGB3 high mobility group box 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:122,591,413...122,599,496
Ensembl chr  X:122,592,936...122,599,493
JBrowse link
G HMGB4 high mobility group box 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:90,133,911...90,136,413
Ensembl chr 6:90,135,806...90,136,396
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 8:113,824,511...113,944,078
Ensembl chr 8:113,824,547...113,944,078
JBrowse link
G LOC100738242 high mobility group protein B3 pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:137,595,910...137,596,549 JBrowse link
G SRY sex determining region Y ISO (MGI:MGI:3690807|PMID:7774816) UniProtKB PMID:7774816 MGI:MGI:3690807 NCBI chr  Y:40,484,990...40,485,700
Ensembl chr  Y:40,484,990...40,485,700
JBrowse link
G TERF1 telomeric repeat binding factor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:62,797,244...62,831,459
Ensembl chr 4:62,796,999...62,831,422
JBrowse link
G TFAM transcription factor A, mitochondrial IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:92,261,713...92,279,731
Ensembl chr14:92,259,403...92,279,550
JBrowse link
G TOP2A DNA topoisomerase II alpha ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr12:22,001,300...22,028,452
Ensembl chr12:22,001,336...22,028,454
JBrowse link
G TREX1 three prime repair exonuclease 1 IEA Ensembl GO_REF:0000107 NCBI chr13:31,177,604...31,180,764
Ensembl chr13:31,178,601...31,180,592
JBrowse link
non-sequence-specific DNA binding, bending term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 IDA (PMID:11275566) AgBase PMID:11275566 NCBI chr11:7,195,556...7,321,071 JBrowse link
G HMGB2 high mobility group box 2 IDA (PMID:11275566) AgBase PMID:11275566 NCBI chr14:16,709,966...16,712,288
Ensembl chr14:16,710,047...16,717,126
JBrowse link
G SAP30L SAP30 like IEA Ensembl GO_REF:0000107 NCBI chr16:68,695,892...68,709,952
Ensembl chr16:68,695,894...68,709,852
JBrowse link
RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEBPG CCAAT enhancer binding protein gamma ISO RGD PMID:1377818 RGD:69946 NCBI chr 6:43,164,902...43,175,002
Ensembl chr 6:43,164,918...43,175,002
JBrowse link

Term paths to the root
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Term Annotations click to browse term
  molecular_function 17379
    binding 15239
      heterocyclic compound binding 4910
        nucleic acid binding 3063
          DNA binding 2005
            DNA binding, bending 18
              non-sequence-specific DNA binding, bending 3
              sequence-specific DNA binding, bending + 1
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.