ONTOLOGY REPORT - ANNOTATIONS


Term:endosome to lysosome transport
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Accession:GO:0008333 term browser browse the term
Definition:The directed movement of substances from endosomes to lysosomes.


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endosome to lysosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aktip AKT interacting protein JBrowse link 19 17,290,048 17,300,054 RGD:1624291
RGD:1600115
G Atg14 autophagy related 14 JBrowse link 15 24,343,418 24,374,776 RGD:1624291
RGD:1600115
G Becn2 beclin 2 JBrowse link 13 93,971,720 93,974,467 RGD:1624291
RGD:1600115
G Bin1 bridging integrator 1 JBrowse link 18 25,163,575 25,222,139 RGD:1600115
RGD:1624291
G Cdx2 caudal type homeo box 2 JBrowse link 12 9,464,026 9,470,565 RGD:1624291
RGD:1600115
G Chmp3 charged multivesicular body protein 3 JBrowse link 4 99,449,213 99,496,156 RGD:4892661
G Chmp5 charged multivesicular body protein 5 JBrowse link 5 57,267,312 57,284,455 RGD:1624291
RGD:1600115
G Clec16a C-type lectin domain containing 16A JBrowse link 10 5,002,196 5,196,914 RGD:13792537
G Dennd3 DENN domain containing 3 JBrowse link 7 114,724,644 114,812,471 RGD:1624291
RGD:1600115
G Dtx3l deltex E3 ubiquitin ligase 3L JBrowse link 11
11
67,758,093
67,768,542
67,767,623
67,772,428
RGD:1624291
RGD:1600115
G Epg5 ectopic P-granules autophagy protein 5 homolog JBrowse link 18 74,299,965 74,397,115 RGD:1624291
RGD:1600115
G Fam160a2 family with sequence similarity 160, member A2 JBrowse link 1 170,216,505 170,238,898 RGD:1624291
RGD:1600115
G Gprasp1 G protein-coupled receptor associated sorting protein 1 JBrowse link X 106,306,795 106,313,904 RGD:1624291
RGD:1600115
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate JBrowse link 10 109,638,944 109,657,460 RGD:4892648
G Hook1 hook microtubule-tethering protein 1 JBrowse link 5 114,940,053 115,000,691 RGD:1624291
RGD:1600115
G Hook2 hook microtubule-tethering protein 2 JBrowse link 19 26,106,713 26,119,353 RGD:1624291
RGD:1600115
G Hook3 hook microtubule-tethering protein 3 JBrowse link 16 70,710,347 70,818,789 RGD:1624291
G Kif13a kinesin family member 13A JBrowse link 17 18,151,582 18,335,027 RGD:1624291
RGD:1600115
G Mgrn1 mahogunin ring finger 1 JBrowse link 10 10,832,573 10,881,999 RGD:1600115
RGD:1624291
G Mtm1 myotubularin 1 JBrowse link 6 18,821,821 18,840,449 RGD:1600115
RGD:1624291
G Pcdhga3 protocadherin gamma subfamily A, 3 JBrowse link 18 30,820,151 30,971,113 RGD:1624291
G Rab12 RAB12, member RAS oncogene family JBrowse link 9 114,683,985 114,709,613 RGD:1624291
RGD:1600115
G Rab7a RAB7A, member RAS oncogene family JBrowse link 4 119,910,461 119,963,065 RGD:1624291
RGD:13792537
G Rab7b Rab7b, member RAS oncogene family JBrowse link 13 48,456,143 48,483,714 RGD:13792537
G Rhob ras homolog family member B JBrowse link 6 33,689,127 33,691,301 RGD:1624291
RGD:1600115
G Rilp Rab interacting lysosomal protein JBrowse link 10 63,658,451 63,662,428 RGD:1624291
RGD:1600115
G Scyl2 SCY1 like pseudokinase 2 JBrowse link 7 30,291,087 30,344,464 RGD:1624291
G Snapin SNAP-associated protein JBrowse link 2 189,878,159 189,880,743 RGD:1624291
RGD:1600115
G Snx16 sorting nexin 16 JBrowse link 2 93,518,796 93,541,056 RGD:1600115
RGD:1624291
G Snx27 sorting nexin family member 27 JBrowse link 2 195,738,613 195,821,608 RGD:1600115
G Sort1 sortilin 1 JBrowse link 2 211,078,092 211,156,312 RGD:1624291
RGD:1600115
G Stx7 syntaxin 7 JBrowse link 1 22,241,655 22,281,850 RGD:4892614
G Stx8 syntaxin 8 JBrowse link 10 54,512,922 54,753,302 RGD:4892614
G Tgfbrap1 transforming growth factor, beta receptor associated protein 1 JBrowse link 9 49,852,560 49,902,943 RGD:1624291
RGD:1600115
G Trak1 trafficking kinesin protein 1 JBrowse link 8 129,946,596 130,106,382 RGD:1624291
RGD:13792537
G Trak2 trafficking kinesin protein 2 JBrowse link 9 65,698,706 65,763,351 RGD:13208835
G Tsg101 tumor susceptibility 101 JBrowse link 1 102,941,151 102,971,017 RGD:4892648
G Vamp7 vesicle-associated membrane protein 7 JBrowse link 12 18,996,566 19,033,714 RGD:4892614
RGD:13792537
RGD:1624291
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog JBrowse link 6 111,271,283 111,296,013 RGD:1600115
RGD:1624291
G Vps11 VPS11 core subunit of CORVET and HOPS complexes JBrowse link 8 48,677,492 48,692,295 RGD:1624291
G Vps16 VPS16 core subunit of CORVET and HOPS complexes JBrowse link 3 122,947,887 122,969,543 RGD:1624291
RGD:1600115
G Vps18 VPS18 core subunit of CORVET and HOPS complexes JBrowse link 3 111,097,352 111,108,206 RGD:1624291
RGD:1600115
G Vps33a VPS33A core subunit of CORVET and HOPS complexes JBrowse link 12 38,459,816 38,482,903 RGD:1624291
G Vps33b VPS33B, late endosome and lysosome associated JBrowse link 1 142,060,955 142,083,955 RGD:1624291
G Vps39 VPS39 subunit of HOPS complex JBrowse link 3 112,087,213 112,125,307 RGD:1624291
RGD:1600115
G Vps41 VPS41 subunit of HOPS complex JBrowse link 17 48,643,754 48,810,633 RGD:1624291
RGD:1600115
endosome to lysosome transport via multivesicular body sorting pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lyst lysosomal trafficking regulator JBrowse link 17 90,323,055 90,522,091 RGD:1624291
G Ubxn6 UBX domain protein 6 JBrowse link 9 10,995,516 11,000,643 RGD:1624291
RGD:1600115
G Vcp valosin-containing protein JBrowse link 5 58,426,548 58,445,953 RGD:1624291
RGD:1600115
G Vps4b vacuolar protein sorting 4 homolog B JBrowse link 13 26,825,261 26,850,460 RGD:1624291
RGD:1600115
multivesicular body-lysosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chmp3 charged multivesicular body protein 3 JBrowse link 4 99,449,213 99,496,156 RGD:1624291
neurotransmitter receptor transport, postsynaptic endosome to lysosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ap3d1 adaptor related protein complex 3 subunit delta 1 JBrowse link 7 11,838,639 11,873,992 RGD:1624291
RGD:13792537
G Cacng2 calcium voltage-gated channel auxiliary subunit gamma 2 JBrowse link 7 119,228,112 119,353,332 RGD:1624291
RGD:13792537
G Cacng3 calcium voltage-gated channel auxiliary subunit gamma 3 JBrowse link 1 192,613,766 192,708,371 RGD:13792537
G Cacng4 calcium voltage-gated channel auxiliary subunit gamma 4 JBrowse link 10 95,954,160 96,015,484 RGD:13792537
G Cacng5 calcium voltage-gated channel auxiliary subunit gamma 5 JBrowse link 10 96,122,240 96,166,606 RGD:13792537
G Cacng7 calcium voltage-gated channel auxiliary subunit gamma 7 JBrowse link 1 64,374,547 64,405,380 RGD:13792537
G Cacng8 calcium voltage-gated channel auxiliary subunit gamma 8 JBrowse link 1 64,330,106 64,350,338 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17896
    localization 5958
      cellular localization 2645
        intracellular transport 1556
          endosome to lysosome transport 57
            endosome to lysosome transport of low-density lipoprotein particle 0
            endosome to lysosome transport via multivesicular body sorting pathway + 5
            neurotransmitter receptor transport, postsynaptic endosome to lysosome 7
Path 2
Term Annotations click to browse term
  biological_process 17896
    localization 5958
      establishment of localization 4566
        transport 4429
          vacuolar transport 133
            lysosomal transport 102
              endosome to lysosome transport 57
                endosome to lysosome transport of low-density lipoprotein particle 0
                endosome to lysosome transport via multivesicular body sorting pathway + 5
                neurotransmitter receptor transport, postsynaptic endosome to lysosome 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.