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ONTOLOGY REPORT - ANNOTATIONS


Term:endosome to lysosome transport
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Accession:GO:0008333 term browser browse the term
Definition:The directed movement of substances from endosomes to lysosomes.


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endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07037545.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:23,416,395...23,417,122 JBrowse link
G Aktip AKT interacting protein ISO
ISS
(PMID:18799622)
GO_REF:0000024
RGD
UniProt
PMID:18799622 GO_REF:0000024 NCBI chr19:17,290,048...17,300,054
Ensembl chr19:17,290,178...17,300,050
JBrowse link
G Atg14 autophagy related 14 ISO UniProtKB:O95295 (PMID:22797916) RGD PMID:22797916 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753
JBrowse link
G Becn2 beclin 2 ISO (PMID:23954414)
(MGI:5528919|PMID:23954414)
RGD PMID:23954414 MGI:5528919 NCBI chr13:93,971,720...93,974,467
Ensembl chr13:93,972,426...93,974,410
JBrowse link
G Bin1 bridging integrator 1 IEA
ISO
GO_REF:0000107
(PMID:27179792)
Ensembl
RGD
PMID:27179792 GO_REF:0000107 NCBI chr18:25,163,575...25,222,139
Ensembl chr18:25,163,561...25,222,135
JBrowse link
G Cdx2 caudal type homeo box 2 ISO (MGI:4457791|PMID:20551175) RGD PMID:20551175 MGI:4457791 NCBI chr12:9,464,026...9,470,565
Ensembl chr12:9,464,026...9,470,565
JBrowse link
G Chmp3 charged multivesicular body protein 3 IMP RGD PMID:18076377 RGD:4892661 NCBI chr 4:99,449,213...99,496,156
Ensembl chr 4:99,449,111...99,494,423
JBrowse link
G Chmp5 charged multivesicular body protein 5 ISO MGI:3626293 (MGI:3622513|PMID:16567502) RGD PMID:16567502 MGI:3622513 NCBI chr 5:57,267,312...57,284,455
Ensembl chr 5:57,267,312...57,284,448
JBrowse link
G Clec16a C-type lectin domain containing 16A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:5,002,196...5,196,914
Ensembl chr10:5,009,826...5,196,892
JBrowse link
G Dennd3 DENN domain containing 3 ISO (MGI:5448516|PMID:21718402) RGD PMID:21718402 MGI:5448516 NCBI chr 7:114,724,644...114,812,471
Ensembl chr 7:114,724,610...114,812,708
JBrowse link
G Dtx3l deltex E3 ubiquitin ligase 3L ISO (PMID:24790097) RGD PMID:24790097 NCBI chr11:67,758,093...67,767,623
NCBI chr11:67,768,542...67,772,428
Ensembl chr11:67,757,928...67,767,622
JBrowse link
G Epg5 ectopic P-granules autophagy protein 5 homolog ISO (PMID:29130391) RGD PMID:29130391 NCBI chr18:74,299,965...74,397,115
Ensembl chr18:74,299,931...74,395,547
JBrowse link
G Fam160a2 family with sequence similarity 160, member A2 ISO
ISS
(PMID:18799622)
GO_REF:0000024
RGD
UniProt
PMID:18799622 GO_REF:0000024 NCBI chr 1:170,216,505...170,238,898
Ensembl chr 1:170,212,817...170,238,890
JBrowse link
G Gprasp1 G protein-coupled receptor associated sorting protein 1 ISO
IEA
ISS
(PMID:23954414)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:23954414 GO_REF:0000024, GO_REF:0000107 NCBI chr  X:106,306,795...106,313,904
Ensembl chr  X:106,306,795...106,313,853
JBrowse link
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate IMP RGD PMID:19808888 RGD:4892648 NCBI chr10:109,638,944...109,657,460
Ensembl chr10:109,638,767...109,657,456
JBrowse link
G Hook1 hook microtubule-tethering protein 1 ISO (PMID:18799622) RGD PMID:18799622 NCBI chr 5:114,940,053...115,000,691
Ensembl chr 5:114,940,053...115,000,691
JBrowse link
G Hook2 hook microtubule-tethering protein 2 ISO (PMID:18799622) RGD PMID:18799622 NCBI chr19:26,106,713...26,119,353
Ensembl chr19:26,106,838...26,119,352
JBrowse link
G Hook3 hook microtubule-tethering protein 3 ISO (PMID:18799622) RGD PMID:18799622 NCBI chr16:70,710,347...70,818,789 JBrowse link
G Kif13a kinesin family member 13A ISO (PMID:19841138) RGD PMID:19841138 NCBI chr17:18,151,582...18,335,027
Ensembl chr17:18,151,982...18,335,019
JBrowse link
G Mgrn1 mahogunin ring finger 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:17229889)
Ensembl
RGD
PMID:17229889, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:10,832,573...10,881,999
Ensembl chr10:10,833,519...10,881,977
JBrowse link
G Mtm1 myotubularin 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:14722070)
Ensembl
UniProt
RGD
PMID:14722070 GO_REF:0000024, GO_REF:0000107 NCBI chr 6:18,821,821...18,840,449
Ensembl chr 6:18,821,815...18,839,409
JBrowse link
G Pcdhga3 protocadherin gamma subfamily A, 3 ISO (MGI:5317350|PMID:21917590) RGD PMID:21917590 MGI:5317350 NCBI chr18:30,820,151...30,971,113
Ensembl chr18:30,820,321...30,822,735
JBrowse link
G Rab12 RAB12, member RAS oncogene family ISS
ISO
GO_REF:0000024
(MGI:5448516|PMID:21718402)
UniProt
RGD
PMID:21718402 GO_REF:0000024, MGI:5448516 NCBI chr 9:114,683,985...114,709,613
Ensembl chr 9:114,684,039...114,709,546
JBrowse link
G Rab7a RAB7A, member RAS oncogene family ISO
IBA
(PMID:18272684)
PMID:21873635
RGD PMID:18272684, PMID:21873635 RGD:13792537 NCBI chr 4:119,910,461...119,963,065
Ensembl chr 4:119,910,478...119,959,173
JBrowse link
G Rab7b Rab7b, member RAS oncogene family IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:48,456,143...48,483,714
Ensembl chr13:48,455,923...48,482,138
JBrowse link
G Rhob ras homolog family member B ISO
ISS
(PMID:10508588)
GO_REF:0000024
RGD
UniProt
PMID:10508588 GO_REF:0000024 NCBI chr 6:33,689,127...33,691,301
Ensembl chr 6:33,689,127...33,691,301
JBrowse link
G Rilp Rab interacting lysosomal protein ISO (PMID:18272684) RGD PMID:18272684 NCBI chr10:63,658,451...63,662,428
Ensembl chr10:63,659,085...63,662,050
JBrowse link
G Rnf157 ring finger protein 157 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:105,291,148...105,368,316
Ensembl chr10:105,293,490...105,368,242
JBrowse link
G Scyl2 SCY1 like pseudokinase 2 ISO (PMID:19643732) RGD PMID:19643732 NCBI chr 7:30,291,087...30,344,464
Ensembl chr 7:30,291,087...30,344,445
JBrowse link
G Snapin SNAP-associated protein ISO
IBA
UniProtKB:Q6ZNE5 (PMID:22797916)
PMID:21873635
RGD PMID:22797916, PMID:21873635 RGD:13792537 NCBI chr 2:189,878,159...189,880,743
Ensembl chr 2:189,878,168...189,880,743
JBrowse link
G Snx16 sorting nexin 16 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:12813048)
Ensembl
UniProt
RGD
PMID:12813048, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 2:93,518,796...93,541,056
Ensembl chr 2:93,518,806...93,540,328
JBrowse link
G Snx27 sorting nexin 27 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:195,738,613...195,821,608
Ensembl chr 2:195,738,619...195,821,608
JBrowse link
G Sort1 sortilin 1 ISO (PMID:11331584) RGD PMID:11331584 NCBI chr 2:211,078,092...211,156,312
Ensembl chr 2:211,078,334...211,156,312
JBrowse link
G Stx7 syntaxin 7 IDA RGD PMID:15133481 RGD:4892614 NCBI chr 1:22,241,655...22,281,850
Ensembl chr 1:22,241,661...22,281,788
JBrowse link
G Stx8 syntaxin 8 IDA RGD PMID:15133481 RGD:4892614 NCBI chr10:54,512,922...54,753,302
Ensembl chr10:54,512,983...54,753,302
JBrowse link
G Tgfbrap1 transforming growth factor, beta receptor associated protein 1 ISO (PMID:25266290) RGD PMID:25266290 NCBI chr 9:49,852,560...49,902,943
Ensembl chr 9:49,852,560...49,902,943
JBrowse link
G Trak1 trafficking kinesin protein 1 ISO
IBA
(PMID:18675823)
PMID:21873635
RGD PMID:18675823, PMID:21873635 RGD:13792537 NCBI chr 8:129,946,596...130,106,382
Ensembl chr 8:130,009,573...130,106,382
JBrowse link
G Trak2 trafficking kinesin protein 2 IDA RGD PMID:17062640 RGD:13208835 NCBI chr 9:65,698,706...65,763,351
Ensembl chr 9:65,698,712...65,763,273
JBrowse link
G Tsg101 tumor susceptibility 101 IMP RGD PMID:19808888 RGD:4892648 NCBI chr 1:102,941,151...102,971,017
Ensembl chr 1:102,941,231...102,970,950
JBrowse link
G Vamp7 vesicle-associated membrane protein 7 IDA
IBA
ISO
PMID:21873635
(PMID:10888671)
RGD PMID:10888671, PMID:15133481, PMID:21873635 RGD:4892614, RGD:13792537 NCBI chr12:18,996,566...19,033,714
Ensembl chr12:18,996,591...19,030,381
JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog NOT IEA
ISO
GO_REF:0000107
(PMID:25783203)
(PMID:19109425)
Ensembl
RGD
PMID:19109425, PMID:25783203 GO_REF:0000107 NCBI chr 6:111,271,283...111,296,013
Ensembl chr 6:111,271,240...111,295,994
JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 8:48,677,492...48,692,295
Ensembl chr 8:48,677,492...48,692,295
JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 3:122,947,887...122,969,543
Ensembl chr 3:122,947,913...122,969,541
JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 3:111,097,352...111,108,206
Ensembl chr 3:111,097,326...111,108,295
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes ISO (PMID:25783203) RGD PMID:25783203 NCBI chr12:38,459,816...38,482,903
Ensembl chr12:38,459,832...38,484,512
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated NOT ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 1:142,060,955...142,083,955
Ensembl chr 1:142,060,955...142,083,953
JBrowse link
G Vps39 VPS39 subunit of HOPS complex ISO (PMID:25266290), (PMID:25783203) RGD PMID:25266290, PMID:25783203 NCBI chr 3:112,087,213...112,125,307
Ensembl chr 3:112,087,677...112,125,318
JBrowse link
G Vps41 VPS41 subunit of HOPS complex ISO (PMID:25783203) RGD PMID:25783203 NCBI chr17:48,643,754...48,810,633
Ensembl chr17:48,648,879...48,810,991
JBrowse link
endosome to lysosome transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028902.1 IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr17:90,370,882...90,522,091 JBrowse link
G Lyst lysosomal trafficking regulator ISO (PMID:9606205) RGD PMID:9606205 NCBI chr17:90,323,055...90,522,091 JBrowse link
G Mvb12a multivesicular body subunit 12A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:19,973,611...19,978,479
Ensembl chr16:19,973,636...19,978,478
JBrowse link
G Ubxn6 UBX domain protein 6 ISO (PMID:21822278) RGD PMID:21822278 NCBI chr 9:10,995,516...11,000,643
Ensembl chr 9:10,995,198...11,000,642
JBrowse link
G Vcp valosin-containing protein ISO
ISS
(PMID:21822278)
GO_REF:0000024
RGD
UniProt
PMID:21822278 GO_REF:0000024 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953
JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B ISO (PMID:15024011) RGD PMID:15024011 NCBI chr13:26,825,261...26,850,460
Ensembl chr13:26,825,261...26,850,460
JBrowse link
multivesicular body-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp3 charged multivesicular body protein 3 ISO (PMID:16554368) RGD PMID:16554368 NCBI chr 4:99,449,213...99,496,156
Ensembl chr 4:99,449,111...99,494,423
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    cellular process 18792
      vesicle-mediated transport 1674
        endosome to lysosome transport 54
          endosome to lysosome transport of low-density lipoprotein particle 0
          endosome to lysosome transport via multivesicular body sorting pathway + 7
Path 2
Term Annotations click to browse term
  biological_process 20020
    localization 6478
      establishment of localization 4886
        transport 4734
          vacuolar transport 158
            lysosomal transport 116
              endosome to lysosome transport 54
                endosome to lysosome transport of low-density lipoprotein particle 0
                endosome to lysosome transport via multivesicular body sorting pathway + 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.