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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA splicing
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Accession:GO:0008380 term browser browse the term
Definition:The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
Synonyms:related_synonym: pre-mRNA splicing factor activity
 alt_id: GO:0006395
 xref: Wikipedia:RNA_splicing


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RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07024964.1 RGD:13792537
G AABR07037800.1 RGD:13792537
G Arl6ip4 ADP-ribosylation factor like GTPase 6 interacting protein 4 JBrowse link 12 37,904,376 37,906,521 RGD:1600115
G Brdt bromodomain testis associated JBrowse link 14 3,437,876 3,462,613 RGD:1600115
G C1qbp complement C1q binding protein JBrowse link 10 57,613,876 57,618,527 RGD:1600115
G Carm1 coactivator-associated arginine methyltransferase 1 JBrowse link 8 22,577,723 22,622,555 RGD:1600115
G Ccar2 cell cycle and apoptosis regulator 2 JBrowse link 15 51,818,887 51,834,443 RGD:1624291
RGD:13792537
G Ccdc130 coiled-coil domain containing 130 JBrowse link 19 25,367,552 25,378,993 RGD:13792537
G Cdk12 cyclin-dependent kinase 12 JBrowse link 10 86,157,186 86,210,657 RGD:8553775
G Celf3 CUGBP, Elav-like family member 3 JBrowse link 2 195,716,373 195,732,872 RGD:1624291
G Cir1 corepressor interacting with RBPJ, CIR1 JBrowse link 3 59,994,547 60,023,843 RGD:1600115
G Clasrp CLK4-associating serine/arginine rich protein JBrowse link 1 80,491,520 80,515,761 RGD:1600115
G Ctnnbl1 catenin, beta like 1 JBrowse link 3 154,212,245 154,373,170 RGD:1600115
G Da2-19 uncharacterized LOC302729 JBrowse link X 48,196,789 48,213,506 RGD:1600115
G Ddx39b DExD-box helicase 39B JBrowse link 20 4,806,103 4,818,600 RGD:1624291
G Ddx47 DEAD-box helicase 47 JBrowse link 4 168,775,134 168,787,594 RGD:1624291
G Elavl4 ELAV like RNA binding protein 4 JBrowse link 5 130,001,387 130,144,557 RGD:1600115
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:1600115
G Fus FUS RNA binding protein JBrowse link 1 199,412,805 199,426,705 RGD:1624291
G Habp4 hyaluronan binding protein 4 JBrowse link 17 1,679,561 1,702,245 RGD:1600115
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 7 144,865,302 144,871,592 RGD:1624291
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 JBrowse link 3 62,481,222 62,491,356 RGD:1600115
G Hnrnpf heterogeneous nuclear ribonucleoprotein F JBrowse link 4 149,957,143 149,978,896 RGD:1600115
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 JBrowse link 10 35,872,619 35,879,911 RGD:1600115
G Hnrnpk heterogeneous nuclear ribonucleoprotein K JBrowse link 17 6,664,730 6,676,753 RGD:1600115
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1600115
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link 8 44,989,401 44,993,261 RGD:1600115
G Ivns1abp influenza virus NS1A binding protein JBrowse link 13 68,702,970 68,722,472 RGD:1624291
G Iws1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link 18 24,849,508 24,891,339 RGD:1600115
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase JBrowse link 10 105,781,752 105,787,803 RGD:1600115
G Khsrp KH-type splicing regulatory protein JBrowse link 9 10,013,795 10,023,670 RGD:1600115
G Larp7 La ribonucleoprotein 7, transcriptional regulator JBrowse link 2 231,866,888 231,882,002 RGD:1600115
G Lgals3 galectin 3 JBrowse link 15 24,153,602 24,165,537 RGD:1600115
G Luc7l3 LUC7-like 3 pre-mRNA splicing factor JBrowse link 10 81,991,147 82,027,119 RGD:1624291
G Magoh mago homolog, exon junction complex subunit JBrowse link 5 127,480,465 127,487,617 RGD:13792537
G Magohb mago homolog B, exon junction complex subunit JBrowse link 4 165,514,584 165,522,366 RGD:13792537
G Mbnl1 muscleblind-like splicing regulator 1 JBrowse link 2 150,698,248 150,867,791 RGD:1624291
G Mbnl2 muscleblind-like splicing regulator 2 JBrowse link 15 105,640,097 105,797,933 RGD:1600115
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link 11 72,071,838 72,103,087 RGD:1600115
G Nsrp1 nuclear speckle splicing regulatory protein 1 JBrowse link 10 63,098,115 63,131,779 RGD:1600115
G Pabpc1 poly(A) binding protein, cytoplasmic 1 JBrowse link 7 75,409,581 75,421,874 RGD:1600115
G Ppil3 peptidylprolyl isomerase like 3 JBrowse link 9 65,315,407 65,329,145 RGD:1600115
G Prpf18 pre-mRNA processing factor 18 JBrowse link 17 77,601,914 77,632,507 RGD:1600115
G Prpf38b pre-mRNA processing factor 38B JBrowse link 2 211,706,245 211,715,271 RGD:1600115
G Prpf4b pre-mRNA processing factor 4B JBrowse link 17 30,680,454 30,714,542 RGD:1600115
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link 7 12,663,965 12,673,723 RGD:1600115
G Ptbp3 polypyrimidine tract binding protein 3 JBrowse link 5 76,670,074 76,756,196 RGD:1600115
G Qk quaking JBrowse link 1 50,983,647 51,050,692 RGD:1600115
G Rbfox1 RNA binding fox-1 homolog 1 JBrowse link 10 8,312,961 10,437,778 RGD:1600115
G Rbfox2 RNA binding fox-1 homolog 2 JBrowse link 7 118,157,093 118,396,733 RGD:1600115
G Rbfox3 RNA binding fox-1 homolog 3 JBrowse link 10 107,517,916 107,850,764 RGD:1600115
G Rbm10 RNA binding motif protein 10 JBrowse link X 1,754,869 1,786,973 RGD:1600115
G Rbm20 RNA binding motif protein 20 JBrowse link 1 274,391,932 274,589,816 RGD:1600115
G Rbmxl1b RNA binding motif protein, X-linked-like 1B JBrowse link 4 42,186,612 42,188,294 RGD:1600115
G Rnps1 RNA binding protein with serine rich domain 1 JBrowse link 10 13,786,339 13,796,720 RGD:13792537
G Rp9 RP9, pre-mRNA splicing factor JBrowse link 8 23,450,111 23,482,939 RGD:1600115
G Rsrc1 arginine and serine rich coiled-coil 1 JBrowse link 2 164,126,898 164,533,652 RGD:1624291
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 48,628,198 48,656,096 RGD:13792537
G Scaf1 SR-related CTD-associated factor 1 JBrowse link 1 100,997,724 101,010,855 RGD:1600115
G Scaf11 SR-related CTD-associated factor 11 JBrowse link 7 137,804,019 137,856,337 RGD:1624291
G Scnm1 sodium channel modifier 1 JBrowse link 2 196,300,239 196,304,419 RGD:1624291
RGD:13792537
G Slu7 SLU7 homolog, splicing factor JBrowse link 10 29,029,556 29,044,919 RGD:13792537
G Smndc1 survival motor neuron domain containing 1 JBrowse link 1 274,096,068 274,107,138 RGD:1600115
G Smu1 SMU1, DNA replication regulator and spliceosomal factor JBrowse link 5 57,042,301 57,061,379 RGD:13792537
G Snrnp27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 JBrowse link 4 118,478,075 118,487,633 RGD:1600115
G Snrpf small nuclear ribonucleoprotein polypeptide F JBrowse link 7 34,478,331 34,485,034 RGD:1624291
G Srek1 splicing regulatory glutamic acid and lysine rich protein 1 JBrowse link 2 33,806,035 33,841,594 RGD:1600115
G Srek1ip1 SREK1-interacting protein 1 JBrowse link 2 34,923,187 34,940,410 RGD:1600115
G Srpk2 SRSF protein kinase 2 JBrowse link 4 7,994,025 8,187,455 RGD:1624291
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link 10 75,334,200 75,341,197 RGD:1624291
G Srsf11 serine and arginine rich splicing factor 11 JBrowse link 2 264,837,463 264,864,296 RGD:1600115
G Srsf7 serine and arginine rich splicing factor 7 JBrowse link 6 2,879,312 2,886,505 RGD:1624291
G Sugp1 SURP and G patch domain containing 1 JBrowse link 16 21,100,923 21,131,795 RGD:1600115
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein JBrowse link 8 96,100,692 96,266,342 RGD:1600115
G Taf15 TATA-box binding protein associated factor 15 JBrowse link 10 70,689,863 70,721,892 RGD:1624291
G Tardbp TAR DNA binding protein JBrowse link 5 165,432,089 165,442,232 RGD:1624291
G Tcerg1 transcription elongation regulator 1 JBrowse link 18 36,796,290 36,889,966 RGD:1624291
G Thoc5 THO complex 5 JBrowse link 14 85,138,219 85,171,729 RGD:1600115
G Thoc6 THO complex 6 JBrowse link 10 12,989,135 12,994,495 RGD:1600115
G Thrap3 thyroid hormone receptor associated protein 3 JBrowse link 5 144,178,248 144,221,318 RGD:1600115
G U2af2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 1 72,312,260 72,329,828 RGD:1624291
G Usb1 U6 snRNA biogenesis phosphodiesterase 1 JBrowse link 19 10,105,750 10,118,701 RGD:1624291
RGD:1600115
G Wbp11 WW domain binding protein 11 JBrowse link 4 170,772,166 170,785,613 RGD:1624291
G Wbp4 WW domain binding protein 4 JBrowse link 15 61,745,989 61,772,516 RGD:13792537
G Wt1 WT1 transcription factor JBrowse link 3 95,133,221 95,180,574 RGD:1624291
RGD:1600115
G Ybx1 Y box binding protein 1 JBrowse link 5 138,319,754 138,336,721 RGD:1600115
G Yju2 YJU2 splicing factor homolog JBrowse link 9 11,098,914 11,108,806 RGD:13792537
G Zfp638 zinc finger protein 638 JBrowse link 4 115,555,185 115,690,272 RGD:1600115
G Zfp830 zinc finger protein 830 JBrowse link 10 70,118,250 70,119,714 RGD:1600115
G Zranb2 zinc finger RANBP2-type containing 2 JBrowse link 2 263,864,088 263,877,872 RGD:1600115
alternative mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07056845.1 RGD:13792537
G Cdk13 cyclin-dependent kinase 13 JBrowse link 17 49,833,194 49,922,932 RGD:1624291
G Celf4 CUGBP, Elav-like family member 4 JBrowse link 18 17,689,090 18,079,835 RGD:1624291
G Ddx17 DEAD-box helicase 17 JBrowse link 7 120,761,843 120,765,012 RGD:1624291
RGD:13792537
G Ddx5 DEAD-box helicase 5 JBrowse link 10 94,979,759 94,988,461 RGD:1624291
G Dhx9 DExH-box helicase 9 JBrowse link 13 70,885,503 70,922,278 RGD:1624291
G Esrp1 epithelial splicing regulatory protein 1 JBrowse link 5 24,576,988 24,631,758 RGD:1624291
G Esrp2 epithelial splicing regulatory protein 2 JBrowse link 19 38,113,412 38,120,578 RGD:1624291
RGD:1600115
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 7 144,865,302 144,871,592 RGD:1624291
G Hnrnpm heterogeneous nuclear ribonucleoprotein M JBrowse link 7 18,516,253 18,554,536 RGD:1624291
RGD:13792537
RGD:1600115
G Insr insulin receptor JBrowse link 12 1,682,527 1,816,414 RGD:9685423
G Kdm1a lysine demethylase 1A JBrowse link 5 154,909,003 154,965,171 RGD:9588288
G Mbnl1 muscleblind-like splicing regulator 1 JBrowse link 2 150,698,248 150,867,791 RGD:1624291
G Pqbp1 polyglutamine binding protein 1 JBrowse link X 15,448,570 15,453,130 RGD:1600115
RGD:1624291
G Puf60 poly-U binding splicing factor 60 JBrowse link 7 117,129,237 117,140,234 RGD:13792537
G Rbm17 RNA binding motif protein 17 JBrowse link 17 70,586,345 70,603,289 RGD:1624291
RGD:13792537
G Rsrc1 arginine and serine rich coiled-coil 1 JBrowse link 2 164,126,898 164,533,652 RGD:1624291
RGD:13792537
G Scnm1 sodium channel modifier 1 JBrowse link 2 196,300,239 196,304,419 RGD:1624291
G Sfpq splicing factor proline and glutamine rich JBrowse link 5 145,079,803 145,088,517 RGD:1624291
RGD:13792537
G Sfswap splicing factor SWAP JBrowse link 12 30,740,563 30,811,015 RGD:1624291
RGD:1600115
G Slu7 SLU7 homolog, splicing factor JBrowse link 10 29,029,556 29,044,919 RGD:1624291
RGD:1304333
G Smptb polypyrimidine tract-binding protein JBrowse link X 17,484,839 17,486,721 RGD:1299129
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link 10 75,334,200 75,341,197 RGD:1624291
RGD:11038736
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link 3 159,305,345 159,310,668 RGD:1624291
RGD:13792537
RGD:1600115
generation of catalytic spliceosome for first transesterification step term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prpf19 pre-mRNA processing factor 19 JBrowse link 1 226,947,065 226,958,147 RGD:13792537
G Xab2 XPA binding protein 2 JBrowse link 12 2,158,391 2,170,397 RGD:13792537
generation of catalytic spliceosome for second transesterification step term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Isy1 ISY1 splicing factor homolog JBrowse link 4 119,721,659 119,742,349 RGD:13792537
G Prpf18 pre-mRNA processing factor 18 JBrowse link 17 77,601,914 77,632,507 RGD:13792537
mRNA 3'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Isy1 ISY1 splicing factor homolog JBrowse link 4 119,721,659 119,742,349 RGD:13792537
G Slu7 SLU7 homolog, splicing factor JBrowse link 10 29,029,556 29,044,919 RGD:1624291
RGD:1304333
mRNA 5'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prpf39 pre-mRNA processing factor 39 JBrowse link 6 86,785,793 86,810,806 RGD:13792537
G Psip1 PC4 and SFRS1 interacting protein 1 JBrowse link 5 101,555,691 101,588,659 RGD:1624291
RGD:1600115
G Sfswap splicing factor SWAP JBrowse link 12 30,740,563 30,811,015 RGD:1624291
RGD:13792537
RGD:1600115
G Snrpc small nuclear ribonucleoprotein polypeptide C JBrowse link 20 7,409,401 7,427,581 RGD:13792537
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link 10 75,334,200 75,341,197 RGD:1624291
G Srsf12 serine and arginine rich splicing factor 12 JBrowse link 5 48,456,777 48,484,017 RGD:1624291
mRNA cis splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07008904.1 RGD:13792537
G AABR07055789.1 RGD:13792537
G Cactin cactin, spliceosome C complex subunit JBrowse link 7 11,258,526 11,266,509 RGD:13792537
G Cwc15 CWC15 spliceosome-associated protein JBrowse link 8 12,994,131 13,004,958 RGD:13792537
G Dcps decapping enzyme, scavenger JBrowse link 8 36,321,992 36,374,665 RGD:1600115
RGD:1624291
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:1600115
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link 11 72,071,838 72,103,087 RGD:1600115
RGD:1624291
G Prpf40a pre-mRNA processing factor 40 homolog A JBrowse link 3 38,680,583 38,741,570 RGD:1600115
G Prpf40b pre-mRNA processing factor 40 homolog B JBrowse link 7 140,958,952 140,981,588 RGD:1600115
G Rbm19 RNA binding motif protein 19 JBrowse link 12 41,907,978 41,993,969 RGD:13792537
G Rbm22 RNA binding motif protein 22 JBrowse link 18 55,828,158 55,839,421 RGD:1624291
RGD:1600115
G Rbm4b RNA binding motif protein 4B JBrowse link 1 220,009,397 220,019,488 RGD:13792537
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 1 220,762,496 220,771,158 RGD:13792537
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link 10 75,334,200 75,341,197 RGD:13792537
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link 5 154,205,358 154,219,550 RGD:13792537
G Srsf12 serine and arginine rich splicing factor 12 JBrowse link 5 48,456,777 48,484,017 RGD:13792537
G Srsf2 serine and arginine rich splicing factor 2 JBrowse link 10 105,792,779 105,795,986 RGD:13792537
G Srsf3 serine and arginine rich splicing factor 3 JBrowse link 20 6,288,285 6,298,218 RGD:13792537
G Srsf4 serine and arginine rich splicing factor 4 JBrowse link 5 150,032,999 150,060,769 RGD:13792537
G Srsf5 serine and arginine rich splicing factor 5 JBrowse link 6 104,611,026 104,640,033 RGD:13792537
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link 3 159,305,345 159,310,668 RGD:13792537
G Srsf7 serine and arginine rich splicing factor 7 JBrowse link 6 2,879,312 2,886,505 RGD:13792537
G Srsf8 serine and arginine rich splicing factor 8 JBrowse link X
X
49,529,525
49,644,973
49,530,166
49,705,870
RGD:13792537
G Srsf9 serine and arginine rich splicing factor 9 JBrowse link 12 47,039,714 47,046,022 RGD:13792537
G Wbp11 WW domain binding protein 11 JBrowse link 4 170,772,166 170,785,613 RGD:13792537
G Wbp11l1 WW domain-binding protein 11-like 1 JBrowse link 4 170,154,257 170,167,724 RGD:13792537
G Wbp4 WW domain binding protein 4 JBrowse link 15 61,745,989 61,772,516 RGD:1624291
RGD:1600115
mRNA splice site selection term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Celf1 CUGBP, Elav-like family member 1 JBrowse link 3 79,768,900 79,844,548 RGD:1624291
RGD:13792537
G Celf2 CUGBP, Elav-like family member 2 JBrowse link 17 75,259,269 75,660,154 RGD:1624291
RGD:13792537
RGD:1600115
G Celf3 CUGBP, Elav-like family member 3 JBrowse link 2 195,716,373 195,732,872 RGD:13792537
G Celf4 CUGBP, Elav-like family member 4 JBrowse link 18 17,689,090 18,079,835 RGD:1624291
RGD:13792537
G Celf5 CUGBP, Elav-like family member 5 JBrowse link 7 11,095,449 11,119,941 RGD:13792537
G Celf6 CUGBP, Elav-like family member 6 JBrowse link 8 64,364,491 64,428,452 RGD:13792537
G Khdc4 KH domain containing 4, pre-mRNA splicing factor JBrowse link 2 188,051,657 188,080,280 RGD:1624291
G Luc7l LUC7-like JBrowse link 10 15,538,878 15,572,651 RGD:13792537
G Luc7l2 LUC7-like 2 pre-mRNA splicing factor JBrowse link 4 66,290,319 66,357,970 RGD:13792537
G Luc7l3 LUC7-like 3 pre-mRNA splicing factor JBrowse link 10 81,991,147 82,027,119 RGD:13792537
G Mbnl1 muscleblind-like splicing regulator 1 JBrowse link 2 150,698,248 150,867,791 RGD:1624291
G Nol3 nucleolar protein 3 JBrowse link 19 37,232,567 37,236,668 RGD:1624291
RGD:1600115
G Ptbp2 polypyrimidine tract binding protein 2 JBrowse link 2 223,261,444 223,323,075 RGD:1624291
G Puf60 poly-U binding splicing factor 60 JBrowse link 7 117,129,237 117,140,234 RGD:13792537
G Rbmx RNA binding motif protein, X-linked JBrowse link X 159,881,835 159,891,405 RGD:2316827
G Rbmxl1 RBMX like 1 JBrowse link 19 33,081,473 33,084,988 RGD:2316827
G Setx senataxin JBrowse link 3 7,680,430 7,731,815 RGD:1624291
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link 5 154,205,358 154,219,550 RGD:1624291
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link 3 159,305,345 159,310,668 RGD:1624291
RGD:13792537
RGD:1600115
G Ythdc1 YTH domain containing 1 JBrowse link 14 22,971,834 23,002,326 RGD:1624291
RGD:1600115
mRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ern1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 10 94,588,555 94,682,072 RGD:1624291
mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07008911.1 RGD:1600115
G AABR07037800.1 RGD:13792537
G AABR07042226.1 RGD:13792537
G AABR07042323.1 RGD:13792537
G AABR07054367.1 RGD:1600115
G AC113901.1 RGD:1600115
G AC126899.1 RGD:13792537
G Aqr aquarius intron-binding spliceosomal factor JBrowse link 3 105,570,399 105,640,431 RGD:1624291
G Bcas2 BCAS2, pre-mRNA processing factor JBrowse link 2 205,662,633 205,670,514 RGD:1624291
G Bud13 BUD13 homolog JBrowse link 8 50,573,026 50,588,860 RGD:1600115
RGD:13792537
RGD:1624291
G Bud31 BUD31 homolog JBrowse link 12 11,232,963 11,240,449 RGD:1624291
RGD:13792537
G Casc3 CASC3 exon junction complex subunit JBrowse link 10 86,724,534 86,744,485 RGD:1600115
RGD:1624291
G Cdc40 cell division cycle 40 JBrowse link 20 48,503,973 48,574,546 RGD:1624291
G Cdc5l cell division cycle 5-like JBrowse link 9 17,949,764 17,988,514 RGD:1624291
RGD:1600115
G Crnkl1 crooked neck pre-mRNA splicing factor 1 JBrowse link 6 18,349,226 18,351,540 RGD:1600115
RGD:13792537
RGD:1624291
G Cwc15 CWC15 spliceosome-associated protein JBrowse link 8 12,994,131 13,004,958 RGD:1600115
RGD:1624291
G Cwc22 CWC22 spliceosome associated protein homolog JBrowse link 3 64,731,145 64,780,127 RGD:1624291
RGD:13792537
G Cwc25 CWC25 spliceosome-associated protein homolog JBrowse link 10 85,684,898 85,709,568 RGD:1624291
RGD:13792537
G Cwf19l1 CWF19 like cell cycle control factor 1 JBrowse link 1 263,887,014 263,910,251 RGD:13792537
G Cwf19l2 CWF19 like cell cycle control factor 2 JBrowse link 6 18,970,616 19,037,176 RGD:13792537
G Dbr1 debranching RNA lariats 1 JBrowse link 8 107,826,690 107,838,186 RGD:1624291
RGD:13792537
G Ddx23 DEAD-box helicase 23 JBrowse link 7 140,325,453 140,342,730 RGD:13792537
G Ddx39a DExD-box helicase 39A JBrowse link 19 24,846,530 24,854,886 RGD:1624291
RGD:13792537
G Ddx39b DExD-box helicase 39B JBrowse link 20 4,806,103 4,818,600 RGD:1624291
RGD:13792537
G Ddx41 DEAD-box helicase 41 JBrowse link 17 9,631,925 9,637,317 RGD:1624291
RGD:13792537
G Ddx46 DEAD-box helicase 46 JBrowse link 17 9,475,275 9,519,545 RGD:13792537
G Dhx16 DEAH-box helicase 16 JBrowse link 20 3,368,971 3,386,087 RGD:1624291
G Dhx38 DEAH-box helicase 38 JBrowse link 19 42,110,291 42,127,540 RGD:1624291
RGD:13792537
G Dhx8 DEAH-box helicase 8 JBrowse link 10 89,645,979 89,683,839 RGD:1624291
G Eftud2 elongation factor Tu GTP binding domain containing 2 JBrowse link 10 90,932,071 90,983,971 RGD:1624291
RGD:13792537
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link 10 108,415,201 108,425,195 RGD:1600115
RGD:1624291
G Gpkow G patch domain and KOW motifs JBrowse link X 15,636,567 15,651,332 RGD:1624291
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 4 81,237,496 81,241,281 RGD:1600115
RGD:1624291
G Hnrnpc heterogeneous nuclear ribonucleoprotein C JBrowse link 15 28,486,605 28,517,353 RGD:1624291
RGD:1600115
G Hnrnpm heterogeneous nuclear ribonucleoprotein M JBrowse link 7 18,516,253 18,554,536 RGD:1600115
G Htatsf1 HIV-1 Tat specific factor 1 JBrowse link X 159,514,053 159,528,281 RGD:1600115
G Ik IK cytokine JBrowse link 18 29,587,901 29,602,705 RGD:1600115
RGD:1624291
G Isy1 ISY1 splicing factor homolog JBrowse link 4 119,721,659 119,742,349 RGD:1600115
RGD:1624291
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like JBrowse link 1 281,863,115 281,864,546 RGD:1600115
RGD:13792537
G LOC100360750 Sm protein F-like JBrowse link 13 47,380,376 47,382,933 RGD:13792537
G LOC102548514 crooked neck-like protein 1-like JBrowse link 3 140,125,232 140,141,730 RGD:1600115
RGD:13792537
G LOC500684 hypothetical protein LOC500684 JBrowse link 6 103,932,428 103,935,122 RGD:13792537
G LOC687679 similar to small nuclear ribonucleoprotein polypeptide G JBrowse link 1 91,588,215 91,588,629 RGD:13792537
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 20 4,966,817 4,970,567 RGD:1624291
RGD:13792537
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 4 123,162,086 123,168,330 RGD:1624291
RGD:13792537
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 16 20,506,399 20,511,818 RGD:1624291
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 4 87,016,003 87,019,219 RGD:1624291
RGD:13792537
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 19 32,770,640 32,785,215 RGD:1624291
RGD:13792537
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 7 11,724,932 11,732,020 RGD:1624291
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated JBrowse link 4 45,555,077 45,560,943 RGD:1624291
RGD:13792537
G Magohb mago homolog B, exon junction complex subunit JBrowse link 4 165,514,584 165,522,366 RGD:1624291
G Mettl14 methyltransferase like 14 JBrowse link 2 227,566,811 227,583,047 RGD:1624291
G Mettl3 methyltransferase-like 3 JBrowse link 15 28,710,299 28,721,491 RGD:1624291
RGD:13792537
G Mfap1a microfibrillar-associated protein 1A JBrowse link 3 113,428,855 113,445,435 RGD:1624291
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:13792537
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link 11 72,071,838 72,103,087 RGD:13792537
G NEWGENE_1359268 Smad nuclear interacting protein 1 JBrowse link 5 143,063,206 143,070,899 RGD:1600115
G Nono non-POU domain containing, octamer-binding JBrowse link X 71,324,365 71,342,225 RGD:13792537
G Nova1 NOVA alternative splicing regulator 1 JBrowse link 6 66,960,126 67,085,836 RGD:1624291
RGD:13792537
RGD:1600115
G Nova2 NOVA alternative splicing regulator 2 JBrowse link 1 79,831,737 79,866,147 RGD:13792537
G Phf5a PHD finger protein 5A JBrowse link 7 123,095,286 123,101,851 RGD:1600115
RGD:13792537
RGD:1624291
G Plrg1 pleiotropic regulator 1 JBrowse link 2 182,040,338 182,056,669 RGD:1600115
RGD:13792537
RGD:1624291
G Ppie peptidylprolyl isomerase E JBrowse link 5 140,822,141 140,835,244 RGD:1624291
G Ppil1 peptidylprolyl isomerase like 1 JBrowse link 20 6,515,638 6,864,571 RGD:1624291
G Prpf19 pre-mRNA processing factor 19 JBrowse link 1 226,947,065 226,958,147 RGD:1624291
RGD:1600115
G Prpf3 pre-mRNA processing factor 3 JBrowse link 2 197,947,010 197,971,464 RGD:1624291
RGD:13792537
G Prpf31 pre-mRNA processing factor 31 JBrowse link 1 64,150,786 64,162,461 RGD:1624291
RGD:13792537
G Prpf38a pre-mRNA processing factor 38A JBrowse link 5 128,174,835 128,186,532 RGD:1624291
G Prpf4 pre-mRNA processing factor 4 JBrowse link 5 78,267,248 78,281,172 RGD:1624291
RGD:13792537
G Prpf40a pre-mRNA processing factor 40 homolog A JBrowse link 3 38,680,583 38,741,570 RGD:13792537
G Prpf40b pre-mRNA processing factor 40 homolog B JBrowse link 7 140,958,952 140,981,588 RGD:13792537
G Prpf6 pre-mRNA processing factor 6 JBrowse link 3 177,098,137 177,162,937 RGD:1600115
RGD:13792537
RGD:1624291
G Prpf8 pre-mRNA processing factor 8 JBrowse link 10 63,635,239 63,658,360 RGD:1624291
G Pspc1 paraspeckle component 1 JBrowse link 15 36,946,914 37,030,273 RGD:13792537
G Raver1 ribonucleoprotein, PTB-binding 1 JBrowse link 8 22,092,084 22,111,863 RGD:13792537
G Raver2 ribonucleoprotein, PTB-binding 2 JBrowse link 5 119,903,449 119,982,723 RGD:13792537
G Rbm10 RNA binding motif protein 10 JBrowse link X 1,754,869 1,786,973 RGD:13792537
G Rbm15 RNA binding motif protein 15 JBrowse link 2 210,079,678 210,090,200 RGD:13792537
G Rbm15b RNA binding motif protein 15B JBrowse link 8 115,618,242 115,623,068 RGD:13792537
G Rbm41 RNA binding motif protein 41 JBrowse link X 111,272,347 111,325,203 RGD:13792537
G Rbm5 RNA binding motif protein 5 JBrowse link 8 116,502,941 116,532,178 RGD:13792537
G Rbm6 RNA binding motif protein 6 JBrowse link 8 116,535,403 116,635,851 RGD:13792537
G Rbm8a RNA binding motif protein 8A JBrowse link 2 198,755,261 198,758,028 RGD:1600115
RGD:1624291
G Rbmx2 RNA binding motif protein, X-linked 2 JBrowse link X 135,550,931 135,558,440 RGD:1600115
RGD:13792537
RGD:1624291
G RGD1566078 similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1) JBrowse link X 152,781,177 152,781,621 RGD:13792537
G Rnf113a1 ring finger protein 113A1 JBrowse link X 123,806,922 123,808,049 RGD:1624291
G Rnpc3 RNA-binding region (RNP1, RRM) containing 3 JBrowse link 2 216,481,457 216,510,051 RGD:13792537
G Rnps1 RNA binding protein with serine rich domain 1 JBrowse link 10 13,786,339 13,796,720 RGD:13792537
G Rsrc1 arginine and serine rich coiled-coil 1 JBrowse link 2 164,126,898 164,533,652 RGD:1624291
RGD:1600115
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 1 220,762,496 220,771,158 RGD:1624291
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 48,628,198 48,656,096 RGD:1624291
RGD:13792537
G Sf1 splicing factor 1 JBrowse link 1 221,735,512 221,749,216 RGD:1600115
G Sf3a1 splicing factor 3a, subunit 1 JBrowse link 14 84,393,182 84,413,931 RGD:1624291
G Sf3a2 splicing factor 3a, subunit 2 JBrowse link 7 11,777,826 11,784,373 RGD:1624291
RGD:1600115
G Sf3a3 splicing factor 3a, subunit 3 JBrowse link 5 142,702,721 142,722,350 RGD:1624291
RGD:13792537
G Sf3b1 splicing factor 3b, subunit 1 JBrowse link 9 61,594,620 61,634,510 RGD:1624291
G Sf3b2 splicing factor 3b, subunit 2 JBrowse link 1 220,645,685 220,665,611 RGD:1624291
RGD:13792537
G Sf3b3 splicing factor 3b, subunit 3 JBrowse link 19 43,392,071 43,429,582 RGD:1624291
RGD:13792537
G Sf3b4 splicing factor 3b, subunit 4 JBrowse link 2 198,312,428 198,317,180 RGD:1624291
G Sf3b5 splicing factor 3b, subunit 5 JBrowse link 1 7,101,715 7,102,427 RGD:1624291
RGD:13792537
G Sf3b6 splicing factor 3B, subunit 6 JBrowse link 6 29,991,232 29,999,668 RGD:1624291
RGD:13792537
G Sfpq splicing factor proline and glutamine rich JBrowse link 5 145,079,803 145,088,517 RGD:13792537
G Slu7 SLU7 homolog, splicing factor JBrowse link 10 29,029,556 29,044,919 RGD:1600115
G Smu1 SMU1, DNA replication regulator and spliceosomal factor JBrowse link 5 57,042,301 57,061,379 RGD:1600115
RGD:1624291
G Snip1 Smad nuclear interacting protein 1 JBrowse link 15 19,275,273 19,282,753 RGD:1600115
RGD:1624291
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 JBrowse link 3 119,640,324 119,669,651 RGD:1600115
RGD:13792537
RGD:1624291
G Snrnp25 small nuclear ribonucleoprotein U11/U12 subunit 25 JBrowse link 10 15,685,999 15,689,338 RGD:1600115
G Snrnp35 small nuclear ribonucleoprotein U11/U12 subunit 35 JBrowse link 12 37,531,082 37,538,823 RGD:13792537
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 1 101,367,470 101,388,153 RGD:1624291
RGD:13792537
RGD:1600115
G Snrpa small nuclear ribonucleoprotein polypeptide A JBrowse link 1 83,999,670 84,008,429 RGD:13792537
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' JBrowse link 1 126,961,389 126,974,453 RGD:1624291
RGD:13792537
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link 3 122,696,125 122,703,734 RGD:1600115
RGD:13792537
RGD:1624291
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 JBrowse link 3 137,138,082 137,147,575 RGD:1624291
RGD:13792537
G Snrpc small nuclear ribonucleoprotein polypeptide C JBrowse link 20 7,409,401 7,427,581 RGD:1624291
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link 18 1,866,066 1,876,613 RGD:1624291
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 1 80,057,140 80,059,990 RGD:1624291
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link 20 14,080,562 14,095,644 RGD:1624291
G Snrpe small nuclear ribonucleoprotein polypeptide E JBrowse link 13 50,252,707 50,258,951 RGD:1624291
G Snrpf small nuclear ribonucleoprotein polypeptide F JBrowse link 7 34,478,331 34,485,034 RGD:1624291
RGD:13792537
G Snrpg small nuclear ribonucleoprotein polypeptide G JBrowse link 4 118,167,267 118,174,846 RGD:1624291
RGD:13792537
G Snrpn small nuclear ribonucleoprotein polypeptide N JBrowse link 1 195,074,328 195,096,460 RGD:13792537
G Snu13 small nuclear ribonucleoprotein 13 JBrowse link 7 123,282,754 123,287,721 RGD:1600115
RGD:13792537
RGD:1624291
G Snw1 SNW domain containing 1 JBrowse link 6 111,483,698 111,507,782 RGD:1624291
G Spen spen family transcriptional repressor JBrowse link 5 160,015,573 160,070,915 RGD:13792537
G Srrm2 serine/arginine repetitive matrix 2 JBrowse link 10 13,128,820 13,162,956 RGD:1624291
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link 5 154,205,358 154,219,550 RGD:1624291
G Syf2 SYF2 pre-mRNA-splicing factor JBrowse link 5 153,269,638 153,277,562 RGD:1600115
RGD:1624291
G Tra2a transformer 2 alpha homolog JBrowse link 4 78,905,380 78,924,203 RGD:1624291
G Tra2b transformer 2 beta homolog JBrowse link 11 82,373,828 82,392,208 RGD:1624291
RGD:1600115
G Txnl4a thioredoxin-like 4A JBrowse link 18 76,725,221 76,740,673 RGD:1624291
G Txnl4b thioredoxin-like 4B JBrowse link 19 42,101,081 42,110,223 RGD:1600115
G U2af1 U2 small nuclear RNA auxiliary factor 1 JBrowse link 20 10,396,652 10,407,564 RGD:13792537
G U2af1l4 U2 small nuclear RNA auxiliary factor 1-like 4 JBrowse link 1 89,017,414 89,019,651 RGD:13792537
G U2af2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 1 72,312,260 72,329,828 RGD:1624291
G Ubl5 ubiquitin-like 5 JBrowse link 8 21,663,257 21,665,049 RGD:13792537
G Usp39 ubiquitin specific peptidase 39 JBrowse link 4 100,181,408 100,211,425 RGD:1624291
G Usp49 ubiquitin specific peptidase 49 JBrowse link 9 15,314,875 15,375,365 RGD:1624291
G Wbp4 WW domain binding protein 4 JBrowse link 15 61,745,989 61,772,516 RGD:1600115
RGD:1624291
G Wdr83 WD repeat domain 83 JBrowse link 19 26,188,644 26,194,193 RGD:1600115
RGD:1624291
G Xab2 XPA binding protein 2 JBrowse link 12 2,158,391 2,170,397 RGD:1600115
RGD:13792537
RGD:1624291
G Ythdc1 YTH domain containing 1 JBrowse link 14 22,971,834 23,002,326 RGD:634512
RGD:13792537
G Zcrb1 zinc finger CCHC-type and RNA binding motif containing 1 JBrowse link 7 134,588,902 134,602,239 RGD:13792537
G Zmat2 zinc finger, matrin type 2 JBrowse link 18 29,639,991 29,644,626 RGD:1624291
RGD:13792537
G Zrsr1 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1 JBrowse link 14 107,750,162 107,751,895 RGD:1624291
RGD:13792537
G Zrsr2 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 JBrowse link X 32,304,707 32,327,419 RGD:1624291
RGD:13792537
negative regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acin1 apoptotic chromatin condensation inducer 1 JBrowse link 15 33,288,369 33,333,256 RGD:1624291
G Akr1c1 aldo-keto reductase family 1, member C1 JBrowse link 17 69,441,253 69,460,334 RGD:1624291
G C1qbp complement C1q binding protein JBrowse link 10 57,613,876 57,618,527 RGD:1624291
RGD:13792537
RGD:1600115
G Celf4 CUGBP, Elav-like family member 4 JBrowse link 18 17,689,090 18,079,835 RGD:1624291
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 11 34,858,339 34,958,733 RGD:1624291
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 4 81,237,496 81,241,281 RGD:1624291
RGD:1600115
G Hnrnpk heterogeneous nuclear ribonucleoprotein K JBrowse link 17 6,664,730 6,676,753 RGD:1624291
G Hnrnpl heterogeneous nuclear ribonucleoprotein L JBrowse link 1 86,994,090 87,006,776 RGD:9999428
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:1624291
G Pcbp4 poly(rC) binding protein 4 JBrowse link 8 115,154,848 115,165,706 RGD:1624291
RGD:13792537
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link 7 12,663,965 12,673,723 RGD:1624291
RGD:13792537
RGD:1600115
G Ptbp3 polypyrimidine tract binding protein 3 JBrowse link 5 76,670,074 76,756,196 RGD:1624291
RGD:13792537
G Rbm10 RNA binding motif protein 10 JBrowse link X 1,754,869 1,786,973 RGD:1624291
RGD:1600115
G Rbm42 RNA binding motif protein 42 JBrowse link 1 89,099,296 89,109,248 RGD:1624291
G Rbmxl1 RBMX like 1 JBrowse link 19 33,081,473 33,084,988 RGD:8554197
G Rnps1 RNA binding protein with serine rich domain 1 JBrowse link 10 13,786,339 13,796,720 RGD:1624291
RGD:1600115
G Sap18 Sin3A associated protein 18 JBrowse link 15 38,069,320 38,073,625 RGD:1624291
G Sfswap splicing factor SWAP JBrowse link 12 30,740,563 30,811,015 RGD:8554197
G Smptb polypyrimidine tract-binding protein JBrowse link X 17,484,839 17,486,721 RGD:13792537
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link 5 154,205,358 154,219,550 RGD:1624291
G Srsf4 serine and arginine rich splicing factor 4 JBrowse link 5 150,032,999 150,060,769 RGD:1624291
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link 3 159,305,345 159,310,668 RGD:1624291
G Srsf7 serine and arginine rich splicing factor 7 JBrowse link 6 2,879,312 2,886,505 RGD:1624291
G Srsf9 serine and arginine rich splicing factor 9 JBrowse link 12 47,039,714 47,046,022 RGD:1624291
RGD:1600115
G Tra2b transformer 2 beta homolog JBrowse link 11 82,373,828 82,392,208 RGD:1624291
G U2af2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 1 72,312,260 72,329,828 RGD:1624291
negative regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akt2 AKT serine/threonine kinase 2 JBrowse link 1 84,400,939 84,451,223 RGD:2313309
G LOC100361854 ribosomal protein S26-like JBrowse link X 115,495,660 115,496,062 RGD:1624291
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link 7 12,663,965 12,673,723 RGD:1624291
G Ptbp2 polypyrimidine tract binding protein 2 JBrowse link 2 223,261,444 223,323,075 RGD:10045970
RGD:13792537
RGD:1624291
G Ptbp3 polypyrimidine tract binding protein 3 JBrowse link 5 76,670,074 76,756,196 RGD:1600115
RGD:1624291
G Rps13 ribosomal protein S13 JBrowse link 1 185,328,902 185,331,332 RGD:1624291
G Tmbim6 transmembrane BAX inhibitor motif containing 6 JBrowse link 7 141,039,433 141,070,269 RGD:1600115
RGD:1624291
positive regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07061152.1 RGD:13792537
G Celf3 CUGBP, Elav-like family member 3 JBrowse link 2 195,716,373 195,732,872 RGD:1624291
G Celf4 CUGBP, Elav-like family member 4 JBrowse link 18 17,689,090 18,079,835 RGD:1624291
G Cirbp cold inducible RNA binding protein JBrowse link 7 12,400,066 12,405,054 RGD:13792537
G Dazap1 DAZ associated protein 1 JBrowse link 7 12,289,895 12,315,897 RGD:1624291
RGD:13792537
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link 10 108,415,201 108,425,195 RGD:1624291
G Hmx2 H6 family homeobox 2 JBrowse link 1 203,515,605 203,523,266 RGD:1624291
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link 8 44,989,401 44,993,261 RGD:1624291
G Lmntd2 lamin tail domain containing 2 JBrowse link 1 214,197,126 214,202,828 RGD:1624291
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:1624291
G Ncl nucleolin JBrowse link 9 93,369,119 93,377,643 RGD:13792537
G Nup98 nucleoporin 98 and 96 precursor JBrowse link 1 167,213,866 167,308,851 RGD:1624291
RGD:1600115
G Obi1 ORC ubiquitin ligase 1 JBrowse link 15 88,632,089 88,670,325 RGD:1624291
G Prdx6 peroxiredoxin 6 JBrowse link 13 79,077,567 79,088,113 RGD:1624291
G Prpf19 pre-mRNA processing factor 19 JBrowse link 1 226,947,065 226,958,147 RGD:1624291
G Rbm3 RNA binding motif protein 3 JBrowse link X 15,098,880 15,102,344 RGD:13792537
G Rbmx RNA binding motif protein, X-linked JBrowse link X 159,881,835 159,891,405 RGD:13792537
G Rbmxl1 RBMX like 1 JBrowse link 19 33,081,473 33,084,988 RGD:2316827
RGD:13792537
G Rbmxl1b RNA binding motif protein, X-linked-like 1B JBrowse link 4 42,186,612 42,188,294 RGD:13792537
G Rbmy1j RNA binding motif protein, Y-linked, family 1, member J JBrowse link Y 380,337 390,669 RGD:13792537
G Sf3b4 splicing factor 3b, subunit 4 JBrowse link 2 198,312,428 198,317,180 RGD:1624291
RGD:13792537
G Slc39a5 solute carrier family 39 member 5 JBrowse link 7 2,813,875 2,819,917 RGD:1624291
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 1 101,367,470 101,388,153 RGD:1624291
G Snw1 SNW domain containing 1 JBrowse link 6 111,483,698 111,507,782 RGD:1624291
G Thrap3 thyroid hormone receptor associated protein 3 JBrowse link 5 144,178,248 144,221,318 RGD:1624291
RGD:1600115
G Tra2a transformer 2 alpha homolog JBrowse link 4 78,905,380 78,924,203 RGD:1624291
RGD:13792537
G Tra2b transformer 2 beta homolog JBrowse link 11 82,373,828 82,392,208 RGD:1624291
RGD:13792537
RGD:1600115
G Zfp64 zinc finger protein 64 JBrowse link 3 165,713,070 165,741,932 RGD:1624291
positive regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 11 34,858,339 34,958,733 RGD:1624291
RGD:13464257
G Ern1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 10 94,588,555 94,682,072 RGD:1624291
G Habp4 hyaluronan binding protein 4 JBrowse link 17 1,679,561 1,702,245 RGD:1624291
RGD:13792537
RGD:1600115
G Hnrnpk heterogeneous nuclear ribonucleoprotein K JBrowse link 17 6,664,730 6,676,753 RGD:10002775
G Hnrnpll heterogeneous nuclear ribonucleoprotein L-like JBrowse link 6 2,698,983 2,729,715 RGD:1624291
RGD:13792537
G Hspa1a heat shock protein family A (Hsp70) member 1A JBrowse link 20 4,875,834 4,881,751 RGD:1624291
G Hspa1b heat shock protein family A (Hsp70) member 1B JBrowse link 20 4,877,638 4,880,112 RGD:1624291
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 7 110,031,819 110,179,475 RGD:632715
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 JBrowse link 2 31,742,326 31,826,882 RGD:1600115
RGD:1624291
G Polr2a RNA polymerase II subunit A JBrowse link 10 56,339,277 56,364,888 RGD:1624291
G Rbm20 RNA binding motif protein 20 JBrowse link 1 274,391,932 274,589,816 RGD:7241566
RGD:13792537
RGD:1624291
G Rbm22 RNA binding motif protein 22 JBrowse link 18 55,828,158 55,839,421 RGD:1624291
RGD:1600115
G Setx senataxin JBrowse link 3 7,680,430 7,731,815 RGD:1624291
G Slc38a2 solute carrier family 38, member 2 JBrowse link 7 138,088,654 138,100,869 RGD:1624291
G Smn1 survival of motor neuron 1, telomeric JBrowse link 2 30,360,101 30,371,147 RGD:1624291
RGD:1600115
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link 10 75,334,200 75,341,197 RGD:11038784
G Srsf5 serine and arginine rich splicing factor 5 JBrowse link 6 104,611,026 104,640,033 RGD:11039429
G U2af2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 1 72,312,260 72,329,828 RGD:1624291
G Zpr1 ZPR1 zinc finger JBrowse link 8 50,563,047 50,572,621 RGD:1624291
regulation of alternative mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07037800.1 RGD:13792537
G AABR07051190.1 RGD:13792537
G AABR07055789.1 RGD:13792537
G AABR07065078.1 RGD:13792537
G Celf1 CUGBP, Elav-like family member 1 JBrowse link 3 79,768,900 79,844,548 RGD:13792537
G Celf2 CUGBP, Elav-like family member 2 JBrowse link 17 75,259,269 75,660,154 RGD:13792537
G Celf3 CUGBP, Elav-like family member 3 JBrowse link 2 195,716,373 195,732,872 RGD:1624291
RGD:13792537
G Celf4 CUGBP, Elav-like family member 4 JBrowse link 18 17,689,090 18,079,835 RGD:1624291
RGD:13792537
G Celf5 CUGBP, Elav-like family member 5 JBrowse link 7 11,095,449 11,119,941 RGD:1624291
RGD:13792537
G Celf6 CUGBP, Elav-like family member 6 JBrowse link 8 64,364,491 64,428,452 RGD:1624291
RGD:13792537
G Ddx17 DEAD-box helicase 17 JBrowse link 7 120,761,843 120,765,012 RGD:1624291
G Ddx5 DEAD-box helicase 5 JBrowse link 10 94,979,759 94,988,461 RGD:1624291
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 11 34,858,339 34,958,733 RGD:8554210
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link 10 108,415,201 108,425,195 RGD:1600115
G Fam172a family with sequence similarity 172, member A JBrowse link 2 4,942,795 5,547,744 RGD:1624291
G Fblim1 filamin binding LIM protein 1 JBrowse link 5 160,122,466 160,158,921 RGD:1600115
RGD:13792537
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:1600115
RGD:13792537
RGD:1624291
G Fxr1 FMR1 autosomal homolog 1 JBrowse link 2 120,529,716 120,570,356 RGD:13792537
G Fxr2 FMR1 autosomal homolog 2 JBrowse link 10 56,237,814 56,257,877 RGD:13792537
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 7 144,865,302 144,871,592 RGD:1624291
RGD:1600115
G Hnrnpl heterogeneous nuclear ribonucleoprotein L JBrowse link 1 86,994,090 87,006,776 RGD:1624291
RGD:13792537
RGD:1600115
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1600115
RGD:13792537
RGD:1624291
G Ik IK cytokine JBrowse link 18 29,587,901 29,602,705 RGD:13792537
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link 5 147,927,145 147,953,093 RGD:1600115
RGD:13792537
RGD:1358238
RGD:1624291
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 JBrowse link 9 39,501,431 40,008,707 RGD:13792537
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 7 110,031,819 110,179,475 RGD:1358238
RGD:13792537
G LOC108348175 protein quaking-like JBrowse link 1 50,828,585 50,936,459 RGD:13792537
G LOC108348453 calsequestrin-1-like JBrowse link 16 6,440,153 6,467,211 RGD:13792537
G Magoh mago homolog, exon junction complex subunit JBrowse link 5 127,480,465 127,487,617 RGD:1624291
RGD:1600115
G Mbnl1 muscleblind-like splicing regulator 1 JBrowse link 2 150,698,248 150,867,791 RGD:13792537
G Mbnl2 muscleblind-like splicing regulator 2 JBrowse link 15 105,640,097 105,797,933 RGD:1624291
RGD:13792537
G Mbnl3 muscleblind-like splicing regulator 3 JBrowse link X 138,378,674 138,473,365 RGD:13792537
G Myod1 myogenic differentiation 1 JBrowse link 1 102,396,538 102,399,248 RGD:1624291
RGD:8553451
RGD:1600115
G Nova1 NOVA alternative splicing regulator 1 JBrowse link 6 66,960,126 67,085,836 RGD:13792537
G Nova2 NOVA alternative splicing regulator 2 JBrowse link 1 79,831,737 79,866,147 RGD:13792537
G Nsrp1 nuclear speckle splicing regulatory protein 1 JBrowse link 10 63,098,115 63,131,779 RGD:1624291
RGD:1600115
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link 7 12,663,965 12,673,723 RGD:1600115
RGD:1624291
G Puf60 poly-U binding splicing factor 60 JBrowse link 7 117,129,237 117,140,234 RGD:13792537
G Qk quaking JBrowse link 1 50,983,647 51,050,692 RGD:13792537
G Rbfox1 RNA binding fox-1 homolog 1 JBrowse link 10 8,312,961 10,437,778 RGD:1624291
RGD:13792537
G Rbfox2 RNA binding fox-1 homolog 2 JBrowse link 7 118,157,093 118,396,733 RGD:1624291
RGD:13792537
G Rbfox3 RNA binding fox-1 homolog 3 JBrowse link 10 107,517,916 107,850,764 RGD:1624291
RGD:13792537
G Rbm10 RNA binding motif protein 10 JBrowse link X 1,754,869 1,786,973 RGD:1600115
G Rbm11 RNA binding motif protein 11 JBrowse link 11 14,005,704 14,015,723 RGD:1624291
RGD:13792537
G Rbm15 RNA binding motif protein 15 JBrowse link 2 210,079,678 210,090,200 RGD:1624291
G Rbm15b RNA binding motif protein 15B JBrowse link 8 115,618,242 115,623,068 RGD:1624291
RGD:13792537
G Rbm17 RNA binding motif protein 17 JBrowse link 17 70,586,345 70,603,289 RGD:13792537
G Rbm19 RNA binding motif protein 19 JBrowse link 12 41,907,978 41,993,969 RGD:13792537
G Rbm24 RNA binding motif protein 24 JBrowse link 17 18,671,037 18,682,876 RGD:1624291
G Rbm25 RNA binding motif protein 25 JBrowse link 6 107,117,888 107,165,538 RGD:1624291
G Rbm25l1 RNA binding motif protein 25-like 1 JBrowse link 10 10,457,316 10,460,540 RGD:13792537
G Rbm4 RNA binding motif protein 4 JBrowse link 1 220,038,403 220,049,756 RGD:1624291
G Rbm4b RNA binding motif protein 4B JBrowse link 1 220,009,397 220,019,488 RGD:13792537
G Rbm5 RNA binding motif protein 5 JBrowse link 8 116,502,941 116,532,178 RGD:1600115
RGD:1624291
G Rbm7 RNA binding motif protein 7 JBrowse link 8 52,823,094 52,828,134 RGD:13792537
G Rbm8a RNA binding motif protein 8A JBrowse link 2 198,755,261 198,758,028 RGD:1624291
RGD:13792537
RGD:1600115
G Rbmx RNA binding motif protein, X-linked JBrowse link X 159,881,835 159,891,405 RGD:1624291
G Rbmxl1 RBMX like 1 JBrowse link 19 33,081,473 33,084,988 RGD:2316827
G Rest RE1-silencing transcription factor JBrowse link 14 33,131,985 33,152,019 RGD:1600115
RGD:1624291
G Rnps1 RNA binding protein with serine rich domain 1 JBrowse link 10 13,786,339 13,796,720 RGD:1624291
RGD:13792537
RGD:1600115
G Sap18 Sin3A associated protein 18 JBrowse link 15 38,069,320 38,073,625 RGD:1624291
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 48,628,198 48,656,096 RGD:13792537
G Sf1 splicing factor 1 JBrowse link 1 221,735,512 221,749,216 RGD:13792537
G Smu1 SMU1, DNA replication regulator and spliceosomal factor JBrowse link 5 57,042,301 57,061,379 RGD:1600115
G Srek1 splicing regulatory glutamic acid and lysine rich protein 1 JBrowse link 2 33,806,035 33,841,594 RGD:1600115
G Srrm4 serine/arginine repetitive matrix 4 JBrowse link 12 45,726,192 45,884,644 RGD:1624291
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link 10 75,334,200 75,341,197 RGD:13792537
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link 5 154,205,358 154,219,550 RGD:13792537
G Srsf12 serine and arginine rich splicing factor 12 JBrowse link 5 48,456,777 48,484,017 RGD:1624291
RGD:13792537
G Srsf2 serine and arginine rich splicing factor 2 JBrowse link 10 105,792,779 105,795,986 RGD:1624291
RGD:13792537
G Srsf3 serine and arginine rich splicing factor 3 JBrowse link 20 6,288,285 6,298,218 RGD:13792537
G Srsf4 serine and arginine rich splicing factor 4 JBrowse link 5 150,032,999 150,060,769 RGD:13792537
G Srsf5 serine and arginine rich splicing factor 5 JBrowse link 6 104,611,026 104,640,033 RGD:13792537
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link 3 159,305,345 159,310,668 RGD:1600115
RGD:13792537
RGD:1624291
G Srsf7 serine and arginine rich splicing factor 7 JBrowse link 6 2,879,312 2,886,505 RGD:13792537
G Srsf8 serine and arginine rich splicing factor 8 JBrowse link X
X
49,529,525
49,644,973
49,530,166
49,705,870
RGD:13792537
G Srsf9 serine and arginine rich splicing factor 9 JBrowse link 12 47,039,714 47,046,022 RGD:13792537
G Thrap3 thyroid hormone receptor associated protein 3 JBrowse link 5 144,178,248 144,221,318 RGD:1624291
RGD:1600115
G Tra2b transformer 2 beta homolog JBrowse link 11 82,373,828 82,392,208 RGD:1600115
RGD:1624291
G Wtap WT1 associated protein JBrowse link 1 47,942,500 47,967,633 RGD:1624291
RGD:13792537
G Ythdc1 YTH domain containing 1 JBrowse link 14 22,971,834 23,002,326 RGD:13792537
G Zbtb7a zinc finger and BTB domain containing 7a JBrowse link 7 11,429,266 11,446,119 RGD:1600115
RGD:1624291
G Zc3h10 zinc finger CCCH type containing 10 JBrowse link 7 2,968,428 2,972,521 RGD:13792537
regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hnrnpk heterogeneous nuclear ribonucleoprotein K JBrowse link 17 6,664,730 6,676,753 RGD:13792537
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase JBrowse link 10 105,781,752 105,787,803 RGD:1624291
RGD:1600115
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link 5 147,927,145 147,953,093 RGD:1624291
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 JBrowse link 9 39,501,431 40,008,707 RGD:1624291
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 7 110,031,819 110,179,475 RGD:1600115
RGD:1624291
G Larp7 La ribonucleoprotein 7, transcriptional regulator JBrowse link 2 231,866,888 231,882,002 RGD:1600115
RGD:1624291
G LOC100359916 heterogeneous nuclear ribonucleoprotein K-like JBrowse link 5 59,911,439 59,913,324 RGD:13792537
G LOC100910882 RNA-binding protein 39-like JBrowse link 3 152,226,011 152,259,236 RGD:1624291
G Mettl16 methyltransferase like 16 JBrowse link 10 61,626,595 61,682,947 RGD:1624291
RGD:1600115
G Rbm39 RNA binding motif protein 39 JBrowse link 3 151,691,498 151,724,723 RGD:1624291
G Rbm42 RNA binding motif protein 42 JBrowse link 1 89,099,296 89,109,248 RGD:13792537
G RGD1305178 similar to Hypothetical protein MGC11690 JBrowse link 3 9,813,914 9,822,222 RGD:13792537
G Son SON DNA and RNA binding protein JBrowse link 11 31,806,598 31,837,769 RGD:1624291
RGD:13792537
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link 5 154,205,358 154,219,550 RGD:1624291
G Srsf3 serine and arginine rich splicing factor 3 JBrowse link 20 6,288,285 6,298,218 RGD:1624291
G Tia1 TIA1 cytotoxic granule-associated RNA binding protein JBrowse link 4 118,207,845 118,238,246 RGD:1624291
G Ythdc1 YTH domain containing 1 JBrowse link 14 22,971,834 23,002,326 RGD:1600115
RGD:13792537
RGD:1624291
regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07051190.1 RGD:13792537
G AC141959.1 RGD:13792537
G Aff2 AF4/FMR2 family, member 2 JBrowse link X 153,539,951 154,051,022 RGD:1624291
RGD:13792537
G Ahnak AHNAK nucleoprotein JBrowse link 1 225,184,883 225,429,638 RGD:1624291
RGD:13792537
RGD:1600115
G Akap17a A-kinase anchoring protein 17A JBrowse link 12 18,527,116 18,531,780 RGD:1624291
RGD:13792537
G Brdt bromodomain testis associated JBrowse link 14 3,437,876 3,462,613 RGD:1624291
RGD:1600115
G Cdk12 cyclin-dependent kinase 12 JBrowse link 10 86,157,186 86,210,657 RGD:8553775
G Celf1 CUGBP, Elav-like family member 1 JBrowse link 3 79,768,900 79,844,548 RGD:1624291
RGD:1600115
G Clk1 CDC-like kinase 1 JBrowse link 9 65,296,777 65,308,017 RGD:1624291
G Clk2 CDC-like kinase 2 JBrowse link 2 188,476,789 188,488,809 RGD:1624291
G Clk3 CDC-like kinase 3 JBrowse link 8 62,528,135 62,543,550 RGD:1624291
RGD:1600115
G Clk4 CDC-like kinase 4 JBrowse link 10 36,715,565 36,733,473 RGD:1624291
G Cpne1 copine 1 JBrowse link 3
3
151,617,733
152,150,143
151,625,448
152,192,936
RGD:13792537
G Esrp1 epithelial splicing regulatory protein 1 JBrowse link 5 24,576,988 24,631,758 RGD:1624291
RGD:13792537
RGD:1600115
G Esrp2 epithelial splicing regulatory protein 2 JBrowse link 19 38,113,412 38,120,578 RGD:1600115
RGD:13792537
RGD:1624291
G Fastk Fas-activated serine/threonine kinase JBrowse link 4 7,260,521 7,264,590 RGD:1624291
G Fblim1 filamin binding LIM protein 1 JBrowse link 5 160,122,466 160,158,921 RGD:13792537
G Fus FUS RNA binding protein JBrowse link 1 199,412,805 199,426,705 RGD:1624291
G Grsf1 G-rich RNA sequence binding factor 1 JBrowse link 14 21,039,990 21,056,413 RGD:13792537
G Hnrnpf heterogeneous nuclear ribonucleoprotein F JBrowse link 4 149,957,143 149,978,896 RGD:1600115
RGD:13792537
RGD:1624291
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 JBrowse link 10 35,872,619 35,879,911 RGD:1600115
RGD:13792537
RGD:1624291
G Hnrnph2 heterogeneous nuclear ribonucleoprotein H2 JBrowse link X 105,417,603 105,423,531 RGD:13792537
G Hnrnph3 heterogeneous nuclear ribonucleoprotein H3 JBrowse link 20 27,167,926 27,178,172 RGD:13792537
G Hnrnpl heterogeneous nuclear ribonucleoprotein L JBrowse link 1 86,994,090 87,006,776 RGD:13792537
G Hnrnpll heterogeneous nuclear ribonucleoprotein L-like JBrowse link 6 2,698,983 2,729,715 RGD:13792537
G LOC103690302 AF4/FMR2 family member 2 RGD:13792537
G LOC679087 similar to swan JBrowse link 5 25,722,247 25,730,014 RGD:13792537
G Mbnl1 muscleblind-like splicing regulator 1 JBrowse link 2 150,698,248 150,867,791 RGD:1624291
G Mbnl2 muscleblind-like splicing regulator 2 JBrowse link 15 105,640,097 105,797,933 RGD:1624291
G Mbnl3 muscleblind-like splicing regulator 3 JBrowse link X 138,378,674 138,473,365 RGD:1624291
G Mettl4 methyltransferase like 4 JBrowse link 9 119,871,519 119,953,248 RGD:1624291
G Myod1 myogenic differentiation 1 JBrowse link 1 102,396,538 102,399,248 RGD:1624291
G Pqbp1 polyglutamine binding protein 1 JBrowse link X 15,448,570 15,453,130 RGD:1624291
RGD:13792537
RGD:1600115
G Prx periaxin JBrowse link 1 84,302,074 84,324,560 RGD:1624291
RGD:13792537
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link 7 12,663,965 12,673,723 RGD:13792537
G Ptbp2 polypyrimidine tract binding protein 2 JBrowse link 2 223,261,444 223,323,075 RGD:13792537
G Ptbp3 polypyrimidine tract binding protein 3 JBrowse link 5 76,670,074 76,756,196 RGD:13792537
G Rbfox2 RNA binding fox-1 homolog 2 JBrowse link 7 118,157,093 118,396,733 RGD:1600115
G Rbm12 RNA binding motif protein 12 JBrowse link 3 151,616,038 151,658,427 RGD:13792537
G Rbm12b RNA binding motif protein 12B JBrowse link 5 25,247,990 25,257,678 RGD:13792537
G Rbm20 RNA binding motif protein 20 JBrowse link 1 274,391,932 274,589,816 RGD:13792537
G Rbm38 RNA binding motif protein 38 JBrowse link 3 171,037,891 171,050,500 RGD:1624291
G Rrp1b ribosomal RNA processing 1B JBrowse link 20 10,844,234 10,869,830 RGD:1624291
G Smptb polypyrimidine tract-binding protein JBrowse link X 17,484,839 17,486,721 RGD:13792537
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 1 101,367,470 101,388,153 RGD:1624291
RGD:1600115
G Son SON DNA and RNA binding protein JBrowse link 11 31,806,598 31,837,769 RGD:1624291
G Srrm4 serine/arginine repetitive matrix 4 JBrowse link 12 45,726,192 45,884,644 RGD:1624291
RGD:13792537
G Tra2b transformer 2 beta homolog JBrowse link 11 82,373,828 82,392,208 RGD:1624291
G Zfp326 zinc finger protein 326 JBrowse link 14
14
4,998,530
5,016,764
5,006,759
5,036,663
RGD:1624291
RNA splicing, via transesterification reactions term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dbr1 debranching RNA lariats 1 JBrowse link 8 107,826,690 107,838,186 RGD:1624291
G Scaf11 SR-related CTD-associated factor 11 JBrowse link 7 137,804,019 137,856,337 RGD:1624291
G Slu7 SLU7 homolog, splicing factor JBrowse link 10 29,029,556 29,044,919 RGD:1624291
RGD:1304333
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link 5 154,205,358 154,219,550 RGD:1624291
G Wdr83 WD repeat domain 83 JBrowse link 19 26,188,644 26,194,193 RGD:1624291
snoRNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC108348079 RING finger protein 113A-like JBrowse link X 124,516,931 124,518,080 RGD:13792537
G Rnf113a1 ring finger protein 113A1 JBrowse link X 123,806,922 123,808,049 RGD:13792537
spliceosomal complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Crnkl1 crooked neck pre-mRNA splicing factor 1 JBrowse link 6 18,349,226 18,351,540 RGD:1624291
RGD:13792537
RGD:1600115
G Ddx39b DExD-box helicase 39B JBrowse link 20 4,806,103 4,818,600 RGD:1624291
G Gcfc2 GC-rich sequence DNA-binding factor 2 JBrowse link 4 112,662,556 112,700,505 RGD:1624291
G Gemin2 gem (nuclear organelle) associated protein 2 JBrowse link 6 80,108,751 80,122,382 RGD:1600115
G Gemin6 gem (nuclear organelle) associated protein 6 JBrowse link 6 2,907,040 2,911,577 RGD:1600115
G LOC102548514 crooked neck-like protein 1-like JBrowse link 3 140,125,232 140,141,730 RGD:1600115
RGD:13792537
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:1624291
G Prpf19 pre-mRNA processing factor 19 JBrowse link 1 226,947,065 226,958,147 RGD:1624291
G Rbm5 RNA binding motif protein 5 JBrowse link 8 116,502,941 116,532,178 RGD:1624291
RGD:1600115
G Scaf11 SR-related CTD-associated factor 11 JBrowse link 7 137,804,019 137,856,337 RGD:1624291
RGD:13792537
G Sf3a2 splicing factor 3a, subunit 2 JBrowse link 7 11,777,826 11,784,373 RGD:13792537
G Sf3b1 splicing factor 3b, subunit 1 JBrowse link 9 61,594,620 61,634,510 RGD:13792537
G Smn1 survival of motor neuron 1, telomeric JBrowse link 2 30,360,101 30,371,147 RGD:1624291
G Srpk1 SRSF protein kinase 1 JBrowse link 20 5,829,412 5,865,877 RGD:13792537
G Srpk2 SRSF protein kinase 2 JBrowse link 4 7,994,025 8,187,455 RGD:1624291
RGD:13792537
G Srpk3 SRSF protein kinase 3 JBrowse link X 157,008,773 157,014,342 RGD:13792537
G Usp39 ubiquitin specific peptidase 39 JBrowse link 4 100,181,408 100,211,425 RGD:1624291
G Zrsr2 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 JBrowse link X 32,304,707 32,327,419 RGD:1624291
spliceosomal complex disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx8 DEAH-box helicase 8 JBrowse link 10 89,645,979 89,683,839 RGD:13792537
G Tfip11 tuftelin interacting protein 11 JBrowse link 12 50,320,820 50,333,052 RGD:1624291
RGD:13792537
RGD:1600115
spliceosomal snRNP assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07042226.1 RGD:1600115
G AC096024.2 RGD:13792537
G Clns1a chloride nucleotide-sensitive channel 1A JBrowse link 1 162,676,246 162,696,549 RGD:1600115
RGD:1624291
G Coil coilin JBrowse link 10 76,320,676 76,336,169 RGD:13792537
G Ddx20 DEAD-box helicase 20 JBrowse link 2 208,144,142 208,154,764 RGD:1624291
RGD:13792537
G Gemin2 gem (nuclear organelle) associated protein 2 JBrowse link 6 80,108,751 80,122,382 RGD:1624291
RGD:13792537
RGD:1600115
G Gemin4 gem (nuclear organelle) associated protein 4 JBrowse link 10 64,364,808 64,375,885 RGD:1624291
RGD:13792537
G Gemin5 gem (nuclear organelle) associated protein 5 JBrowse link 10 43,552,260 43,599,241 RGD:1624291
G Gemin6 gem (nuclear organelle) associated protein 6 JBrowse link 6 2,907,040 2,911,577 RGD:1624291
RGD:13792537
G Gemin7 gem (nuclear organelle) associated protein 7 JBrowse link 1 80,473,966 80,487,976 RGD:1624291
RGD:13792537
G Gemin7l1 gem (nuclear organelle) associated protein 7-like 1 JBrowse link 4 78,954,274 78,955,038 RGD:13792537
G Gemin8 gem (nuclear organelle) associated protein 8 JBrowse link X 29,806,605 29,825,439 RGD:1624291
RGD:13792537
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 16 20,506,399 20,511,818 RGD:13792537
G Prmt5 protein arginine methyltransferase 5 JBrowse link 15 33,156,508 33,165,893 RGD:1624291
G Prmt7 protein arginine methyltransferase 7 JBrowse link 19 38,189,605 38,237,155 RGD:1624291
RGD:1600115
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 48,628,198 48,656,096 RGD:1624291
G Smn1 survival of motor neuron 1, telomeric JBrowse link 2 30,360,101 30,371,147 RGD:1624291
RGD:1600115
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link 3 122,696,125 122,703,734 RGD:1624291
RGD:1600115
G Snrpc small nuclear ribonucleoprotein polypeptide C JBrowse link 20 7,409,401 7,427,581 RGD:1624291
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link 18 1,866,066 1,876,613 RGD:1624291
RGD:13792537
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 1 80,057,140 80,059,990 RGD:1624291
RGD:13792537
G Snrpd2l small nuclear ribonucleoprotein D2-like JBrowse link 20 28,872,902 28,873,434 RGD:13792537
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link 20 14,080,562 14,095,644 RGD:1624291
RGD:13792537
G Snrpe small nuclear ribonucleoprotein polypeptide E JBrowse link 13 50,252,707 50,258,951 RGD:1624291
RGD:13792537
G Snrpep2 small nuclear ribonucleoprotein polypeptide E pseudogene 2 JBrowse link 1 141,503,818 141,504,126 RGD:13792537
G Snrpf small nuclear ribonucleoprotein polypeptide F JBrowse link 7 34,478,331 34,485,034 RGD:1624291
G Snrpg small nuclear ribonucleoprotein polypeptide G JBrowse link 4 118,167,267 118,174,846 RGD:1624291
G Strap serine/threonine kinase receptor associated protein JBrowse link 4 171,730,629 171,744,877 RGD:1624291
RGD:13792537
RGD:1600115
G Tdrd6 tudor domain containing 6 JBrowse link 9 19,917,613 19,932,888 RGD:1624291
spliceosomal tri-snRNP complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aar2 AAR2 splicing factor JBrowse link 3 152,626,738 152,648,365 RGD:13792537
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 20 4,966,817 4,970,567 RGD:1624291
G Prpf19 pre-mRNA processing factor 19 JBrowse link 1 226,947,065 226,958,147 RGD:1624291
RGD:1600115
G Prpf3 pre-mRNA processing factor 3 JBrowse link 2 197,947,010 197,971,464 RGD:1624291
G Prpf31 pre-mRNA processing factor 31 JBrowse link 1 64,150,786 64,162,461 RGD:1624291
G Prpf6 pre-mRNA processing factor 6 JBrowse link 3 177,098,137 177,162,937 RGD:1624291
RGD:13792537
G Prpf8 pre-mRNA processing factor 8 JBrowse link 10 63,635,239 63,658,360 RGD:1624291
RGD:13792537
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 48,628,198 48,656,096 RGD:1624291
G Usp4 ubiquitin specific peptidase 4 JBrowse link 8 117,126,692 117,171,012 RGD:1624291
RGD:1600115
spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 JBrowse link 3 119,640,324 119,669,651 RGD:13792537
tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase JBrowse link 7 23,913,830 23,933,191 RGD:13792537
tRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 3 72,125,269 72,137,122 RGD:1600115
RGD:13792537
RGD:1624291
G Ddx1 DEAD-box helicase 1 JBrowse link 6 38,422,892 38,453,762 RGD:1624291
RGD:1600115
G Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase JBrowse link 7 23,913,830 23,933,191 RGD:1600115
RGD:13792537
RGD:1624291
G Rtraf RNA transcription, translation and transport factor JBrowse link 15 4,882,925 4,893,890 RGD:1624291
G Trpt1 tRNA phosphotransferase 1 JBrowse link 1 222,250,995 222,255,994 RGD:1624291
RGD:13792537
G Tsen15 tRNA splicing endonuclease subunit 15 JBrowse link 13 69,765,093 69,781,019 RGD:1600115
G Tsen2 tRNA splicing endonuclease subunit 2 JBrowse link 4 147,455,506 147,490,869 RGD:1624291
G Tsen54 tRNA splicing endonuclease subunit 54 JBrowse link 10 104,358,401 104,366,926 RGD:1624291
G Zbtb8os zinc finger and BTB domain containing 8 opposite strand JBrowse link 5 147,535,584 147,547,252 RGD:1624291
RGD:13792537
tRNA-type intron splice site recognition and cleavage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tsen2 tRNA splicing endonuclease subunit 2 JBrowse link 4 147,455,506 147,490,869 RGD:13792537
G Tsen34 tRNA splicing endonuclease subunit 34 JBrowse link 1 64,023,924 64,031,756 RGD:13792537
G Tsen34l1 tRNA splicing endonuclease subunit 34-like 1 JBrowse link 1 64,092,224 64,100,061 RGD:13792537
G Tsen54 tRNA splicing endonuclease subunit 54 JBrowse link 10 104,358,401 104,366,926 RGD:13792537
U2-type prespliceosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sf3a1 splicing factor 3a, subunit 1 JBrowse link 14 84,393,182 84,413,931 RGD:1624291
G Sf3a2 splicing factor 3a, subunit 2 JBrowse link 7 11,777,826 11,784,373 RGD:1624291
RGD:1600115
G Sf3a3 splicing factor 3a, subunit 3 JBrowse link 5 142,702,721 142,722,350 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19676
    metabolic process 11952
      organic substance metabolic process 11358
        macromolecule metabolic process 9814
          gene expression 6045
            RNA processing 905
              RNA splicing 389
                RNA splicing, via endonucleolytic cleavage and ligation + 12
                RNA splicing, via transesterification reactions + 296
                negative regulation of RNA splicing + 31
                positive regulation of RNA splicing + 47
                regulation of RNA splicing + 173
                snoRNA splicing 2
Path 2
Term Annotations click to browse term
  biological_process 19676
    cellular process 18449
      cellular metabolic process 10780
        cellular nitrogen compound metabolic process 6417
          nucleobase-containing compound metabolic process 5310
            nucleic acid metabolic process 4821
              RNA metabolic process 4321
                RNA processing 905
                  RNA splicing 389
                    RNA splicing, via endonucleolytic cleavage and ligation + 12
                    RNA splicing, via transesterification reactions + 296
                    negative regulation of RNA splicing + 31
                    positive regulation of RNA splicing + 47
                    regulation of RNA splicing + 173
                    snoRNA splicing 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.