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ONTOLOGY REPORT - ANNOTATIONS


Term:phospholipid biosynthetic process
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Accession:GO:0008654 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester.
Synonyms:exact_synonym: phospholipid anabolism;   phospholipid biosynthesis;   phospholipid formation;   phospholipid synthesis
 xref: MIPS_funcat:01.06.01.01;   MetaCyc:LIPASYN-PWY;   MetaCyc:PHOSLIPSYN-PWY;   MetaCyc:PHOSLIPSYN2-PWY


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phospholipid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acsl5 acyl-CoA synthetase long-chain family member 5 JBrowse link 1 276,240,703 276,290,012 RGD:2312802
G Acsl6 acyl-CoA synthetase long-chain family member 6 JBrowse link 10 39,654,771 39,717,592 RGD:2312811
G Fgf7 fibroblast growth factor 7 JBrowse link 3 118,315,859 118,368,464 RGD:68696
G Fitm1 fat storage-inducing transmembrane protein 1 JBrowse link 15 34,251,805 34,253,074 RGD:13792537
G Fitm2 fat storage-inducing transmembrane protein 2 JBrowse link 3 159,856,994 159,863,506 RGD:13792537
G Gnpat glyceronephosphate O-acyltransferase JBrowse link 19 57,614,813 57,640,524 RGD:13792537
G Gpam glycerol-3-phosphate acyltransferase, mitochondrial JBrowse link 1 275,843,823 275,906,880 RGD:13792537
G Gpat2 glycerol-3-phosphate acyltransferase 2, mitochondrial JBrowse link 3 119,949,921 120,003,090 RGD:13792537
G Hexb hexosaminidase subunit beta JBrowse link 2 27,983,925 28,003,260 RGD:1624291
RGD:1600115
G Isyna1 inositol-3-phosphate synthase 1 JBrowse link 16 20,589,497 20,592,333 RGD:1600115
G Lpcat1 lysophosphatidylcholine acyltransferase 1 JBrowse link 1 32,379,431 32,429,917 RGD:1624291
RGD:1600115
G Lpcat2b lysophosphatidylcholine acyltransferase 2b JBrowse link 14 3,355,890 3,359,300 RGD:1600115
G Lpcat3 lysophosphatidylcholine acyltransferase 3 JBrowse link 4 157,181,722 157,222,997 RGD:1600115
G Mboat2 membrane bound O-acyltransferase domain containing 2 JBrowse link 6 44,009,872 44,135,501 RGD:1600115
G Pip5k1a phosphatidylinositol-4-phosphate 5-kinase, type 1, alpha JBrowse link 2 196,227,669 196,270,949 RGD:1624291
G Pisd phosphatidylserine decarboxylase JBrowse link 14 83,298,630 83,347,697 RGD:1600115
G Plaat3 phospholipase A and acyltransferase 3 JBrowse link 1 222,844,238 222,877,180 RGD:1624291
RGD:1600115
G Pld1 phospholipase D1 JBrowse link 2 113,651,967 113,849,403 RGD:8554572
G Ppard peroxisome proliferator-activated receptor delta JBrowse link 20 7,818,289 7,883,482 RGD:2324892
G Serinc1 serine incorporator 1 JBrowse link 20 38,966,016 38,985,056 RGD:1600115
G Serinc4 serine incorporator 4 JBrowse link 3 113,417,592 113,423,473 RGD:1600115
G Serinc5 serine incorporator 5 JBrowse link 2 22,195,507 22,310,289 RGD:1600115
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 JBrowse link 2 250,709,812 250,744,216 RGD:1624291
G Tmem38b transmembrane protein 38B JBrowse link 5 70,639,156 70,675,055 RGD:1624291
RGD:1600115
attachment of GPI anchor to protein term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gpaa1 glycosylphosphatidylinositol anchor attachment 1 JBrowse link 7 117,394,367 117,397,950 RGD:13792537
G Pigk phosphatidylinositol glycan anchor biosynthesis, class K JBrowse link 2 257,911,099 257,997,735 RGD:13792537
G Pigs phosphatidylinositol glycan anchor biosynthesis, class S JBrowse link 10 65,591,638 65,606,175 RGD:1600115
RGD:1624291
G Pigt phosphatidylinositol glycan anchor biosynthesis, class T JBrowse link 3 160,945,556 160,954,738 RGD:13792537
RGD:1624291
G Pigu phosphatidylinositol glycan anchor biosynthesis, class U JBrowse link 3 150,803,096 150,885,597 RGD:1600115
RGD:13792537
RGD:1624291
cardiolipin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Crls1 cardiolipin synthase 1 JBrowse link 3 125,503,638 125,522,460 RGD:13792537
G Pgs1 phosphatidylglycerophosphate synthase 1 JBrowse link 10 106,994,595 107,030,208 RGD:1600115
RGD:13792537
G Pla2g6 phospholipase A2 group VI JBrowse link 7 120,519,479 120,559,716 RGD:1624291
RGD:1600115
G Ptpmt1 protein tyrosine phosphatase, mitochondrial 1 JBrowse link 3 79,734,961 79,743,737 RGD:1624291
RGD:1600115
G Slc27a1 solute carrier family 27 member 1 JBrowse link 16 19,997,823 20,016,193 RGD:1600115
RGD:13792537
RGD:1624291
G Tamm41 TAM41 mitochondrial translocator assembly and maintenance homolog JBrowse link 4 146,922,085 146,954,159 RGD:1600115
G Taz tafazzin JBrowse link X 156,421,006 156,429,461 RGD:1624291
RGD:1600115
CDP-choline pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cept1 choline/ethanolamine phosphotransferase 1 JBrowse link 2 209,118,140 209,162,071 RGD:1600115
G Chka choline kinase alpha JBrowse link 1 219,076,618 219,126,221 RGD:1600115
G Chkb choline kinase beta JBrowse link 7 130,404,818 130,408,813 RGD:1600115
G Chpt1 choline phosphotransferase 1 JBrowse link 7 29,019,518 29,070,928 RGD:1600115
G Etnk2 ethanolamine kinase 2 JBrowse link 13 50,481,178 50,498,991 RGD:1600115
G Pcyt1a phosphate cytidylyltransferase 1, choline, alpha JBrowse link 11 71,547,865 71,592,037 RGD:8553740
G Pcyt1b phosphate cytidylyltransferase 1, choline, beta JBrowse link X 62,727,691 62,821,199 RGD:1600115
G Phka1 phosphorylase kinase regulatory subunit alpha 1 JBrowse link X 72,377,020 72,515,385 RGD:1600115
CDP-diacylglycerol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agpat4 1-acylglycerol-3-phosphate O-acyltransferase 4 JBrowse link 1 48,716,094 48,826,292 RGD:1600115
G Cds1 CDP-diacylglycerol synthase 1 JBrowse link 14 9,396,511 9,456,964 RGD:1600115
RGD:1624291
G Cds2 CDP-diacylglycerol synthase 2 JBrowse link 3 124,896,657 124,935,221 RGD:1600115
G Gpam glycerol-3-phosphate acyltransferase, mitochondrial JBrowse link 1 275,843,823 275,906,880 RGD:1600115
G Gpat3 glycerol-3-phosphate acyltransferase 3 JBrowse link 14 10,343,287 10,396,565 RGD:1600115
G Tamm41 TAM41 mitochondrial translocator assembly and maintenance homolog JBrowse link 4 146,922,085 146,954,159 RGD:1600115
ceramide phosphoethanolamine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Samd8 sterile alpha motif domain containing 8 JBrowse link 15 2,685,504 2,731,062 RGD:1624291
RGD:1600115
G Sgms2 sphingomyelin synthase 2 JBrowse link 2 236,458,276 236,530,667 RGD:1624291
RGD:1600115
dimethylallyl diphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Idi1 isopentenyl-diphosphate delta isomerase 1 JBrowse link 17 57,976,266 57,984,036 RGD:1600115
dolichyl diphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhdds dehydrodolichyl diphosphate synthase subunit JBrowse link 5 152,200,681 152,227,669 RGD:1600115
RGD:1624291
G Dpagt1 dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 JBrowse link 8 48,657,779 48,664,531 RGD:13792537
G Nus1 NUS1 dehydrodolichyl diphosphate synthase subunit JBrowse link 20 33,557,052 33,584,011 RGD:1600115
RGD:1624291
dolichyl monophosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dolk dolichol kinase JBrowse link 3 8,850,154 8,852,192 RGD:1624291
RGD:13792537
farnesyl diphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fdps farnesyl diphosphate synthase JBrowse link 2 188,403,595 188,413,219 RGD:2316305
RGD:13792537
RGD:1600115
G Ggps1 geranylgeranyl diphosphate synthase 1 JBrowse link 17 53,956,185 53,971,039 RGD:1600115
farnesyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase JBrowse link 2 27,480,224 27,500,654 RGD:1300058
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 JBrowse link 2 52,427,351 52,445,082 RGD:13792537
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 JBrowse link 2 200,452,623 200,480,785 RGD:13792537
geranyl diphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fdps farnesyl diphosphate synthase JBrowse link 2 188,403,595 188,413,219 RGD:1600115
G Ggps1 geranylgeranyl diphosphate synthase 1 JBrowse link 17 53,956,185 53,971,039 RGD:1600115
geranylgeranyl diphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ggps1 geranylgeranyl diphosphate synthase 1 JBrowse link 17 53,956,185 53,971,039 RGD:1600115
glycerophospholipid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ajuba ajuba LIM protein JBrowse link 15 33,208,210 33,218,456 RGD:1624291
RGD:1600115
G Crls1 cardiolipin synthase 1 JBrowse link 3 125,503,638 125,522,460 RGD:13792537
G Far1 fatty acyl CoA reductase 1 JBrowse link 1 178,351,674 178,412,838 RGD:1600115
RGD:1624291
G Hdhd5 haloacid dehalogenase like hydrolase domain containing 5 JBrowse link 4 153,046,701 153,079,065 RGD:13792537
GPI anchor biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cwh43 cell wall biogenesis 43 C-terminal homolog JBrowse link 14 37,315,479 37,361,728 RGD:13792537
G Dpm1 dolichyl-phosphate mannosyltransferase subunit 1, catalytic JBrowse link 3 164,966,637 164,986,180 RGD:1624291
RGD:13792537
G Dpm2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory JBrowse link 3 11,587,941 11,590,528 RGD:69827
RGD:13792537
RGD:1624291
RGD:1600115
G Dpm3 dolichyl-phosphate mannosyltransferase subunit 3, regulatory JBrowse link 2 188,583,664 188,584,179 RGD:1624291
RGD:13792537
G Gpaa1 glycosylphosphatidylinositol anchor attachment 1 JBrowse link 7 117,394,367 117,397,950 RGD:1331364
G LOC100910143 GPI ethanolamine phosphate transferase 2-like JBrowse link 14 1,567,713 1,596,004 RGD:13792537
G LOC103694910 GPI mannosyltransferase 1 RGD:1600115
RGD:13792537
G Mppe1 metallophosphoesterase 1 JBrowse link 18 62,946,952 62,966,174 RGD:1600115
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 JBrowse link 9 61,066,170 61,134,963 RGD:1303970
G Pgap2 post-GPI attachment to proteins 2 JBrowse link 1 167,309,021 167,335,550 RGD:8553507
RGD:13792537
G Pgap3 post-GPI attachment to proteins phospholipase 3 JBrowse link 10 86,343,058 86,356,146 RGD:13792537
G Piga phosphatidylinositol glycan anchor biosynthesis, class A JBrowse link X 31,786,823 31,799,751 RGD:1624291
RGD:13792537
G Pigb phosphatidylinositol glycan anchor biosynthesis, class B JBrowse link 8 79,691,407 79,715,284 RGD:1624291
RGD:13792537
G Pigc phosphatidylinositol glycan anchor biosynthesis, class C JBrowse link 13 79,886,832 79,889,305 RGD:1600115
RGD:1624291
G Pigf phosphatidylinositol glycan anchor biosynthesis, class F JBrowse link 6 10,565,841 10,593,972 RGD:1624291
RGD:1600115
G Pigg phosphatidylinositol glycan anchor biosynthesis, class G JBrowse link 14 2,410,339 2,438,630 RGD:1624291
RGD:13792537
G Pigh phosphatidylinositol glycan anchor biosynthesis, class H JBrowse link 6 102,258,621 102,272,826 RGD:13792537
G Pigl phosphatidylinositol glycan anchor biosynthesis, class L JBrowse link 10 48,774,018 48,831,848 RGD:729509
RGD:1600115
G Pigm phosphatidylinositol glycan anchor biosynthesis, class M JBrowse link 13 90,759,260 90,762,957 RGD:70624
RGD:13792537
RGD:1600115
G Pign phosphatidylinositol glycan anchor biosynthesis, class N JBrowse link 13 25,510,593 25,662,943 RGD:13792537
G Pigo phosphatidylinositol glycan anchor biosynthesis, class O JBrowse link 5 58,461,055 58,470,699 RGD:1624291
RGD:13792537
G Pigp phosphatidylinositol glycan anchor biosynthesis, class P JBrowse link 11 34,592,128 34,598,253 RGD:1624291
RGD:1600115
G Pigq phosphatidylinositol glycan anchor biosynthesis, class Q JBrowse link 10 15,289,530 15,305,593 RGD:1624291
RGD:1600115
G Pigu phosphatidylinositol glycan anchor biosynthesis, class U JBrowse link 3 150,803,096 150,885,597 RGD:1624291
G Pigv phosphatidylinositol glycan anchor biosynthesis, class V JBrowse link 5 151,886,132 151,899,024 RGD:1600115
RGD:13792537
RGD:1624291
G Pigw phosphatidylinositol glycan anchor biosynthesis, class W JBrowse link 10 72,194,774 72,198,415 RGD:1600115
RGD:13792537
G Pigx phosphatidylinositol glycan anchor biosynthesis, class X JBrowse link 11 71,938,388 71,954,225 RGD:1600115
G Pigy phosphatidylinositol glycan anchor biosynthesis, class Y JBrowse link 8 23,167,974 23,170,215 RGD:1624291
RGD:13792537
G Pigz phosphatidylinositol glycan anchor biosynthesis, class Z JBrowse link 11 72,930,040 72,936,002 RGD:1624291
RGD:13792537
G Pyurf PIGY upstream reading frame JBrowse link 4 88,584,242 88,587,877 RGD:1624291
RGD:13792537
RGD:1600115
isopentenyl diphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07028157.1 RGD:13792537
G Idi1 isopentenyl-diphosphate delta isomerase 1 JBrowse link 17 57,976,266 57,984,036 RGD:13792537
G LOC102551575 isopentenyl-diphosphate delta-isomerase 2-like JBrowse link 17 57,864,652 57,866,201 RGD:13792537
G LOC291276 similar to isopentenyl diphosphate delta-isomerase type 2 JBrowse link 17 57,701,861 57,705,698 RGD:13792537
G RGD1564347 similar to isopentenyl diphosphate delta-isomerase type 2 JBrowse link 17 57,674,146 57,688,350 RGD:13792537
isopentenyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mvd mevalonate diphosphate decarboxylase JBrowse link 19 55,258,910 55,268,933 RGD:2316852
RGD:13792537
RGD:1600115
G Mvk mevalonate kinase JBrowse link 12 47,904,266 47,920,457 RGD:2316852
RGD:13792537
RGD:1600115
G Pmvk phosphomevalonate kinase JBrowse link 2 188,784,329 188,793,890 RGD:2316852
RGD:13792537
RGD:1600115
negative regulation of phosphatidylcholine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lpcat1 lysophosphatidylcholine acyltransferase 1 JBrowse link 1 32,379,431 32,429,917 RGD:1624291
RGD:1600115
negative regulation of phosphatidylinositol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pdgfa platelet derived growth factor subunit A JBrowse link 12 17,734,141 17,756,186 RGD:1624291
RGD:1600115
G Pdgfb platelet derived growth factor subunit B JBrowse link 7 121,215,458 121,233,092 RGD:1624291
RGD:1600115
negative regulation of phospholipid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca2 ATP binding cassette subfamily A member 2 JBrowse link 3 2,648,787 2,668,770 RGD:1624291
RGD:14697729
RGD:1600115
G Slc27a1 solute carrier family 27 member 1 JBrowse link 16 19,997,823 20,016,193 RGD:1600115
RGD:13792537
RGD:1624291
phosphatidic acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abhd5 abhydrolase domain containing 5 JBrowse link 8 130,973,222 131,001,448 RGD:1624291
RGD:13792537
RGD:1600115
G Agpat1 1-acylglycerol-3-phosphate O-acyltransferase 1 JBrowse link 20 4,369,399 4,378,272 RGD:1624291
RGD:13792537
G Agpat2 1-acylglycerol-3-phosphate O-acyltransferase 2 JBrowse link 3 4,044,741 4,055,384 RGD:1624291
RGD:13792537
G Dgka diacylglycerol kinase, alpha JBrowse link 7 3,143,826 3,170,764 RGD:1624291
RGD:1600115
G Dgkq diacylglycerol kinase, theta JBrowse link 14 2,069,409 2,083,370 RGD:1624291
RGD:1600115
G Dgkz diacylglycerol kinase zeta JBrowse link 3 80,844,002 80,886,487 RGD:1600115
RGD:1624291
G Pld1 phospholipase D1 JBrowse link 2 113,651,967 113,849,403 RGD:8554572
RGD:1600115
G Pld2 phospholipase D2 JBrowse link 10 57,161,921 57,181,148 RGD:1600115
G Pnpla3 patatin-like phospholipase domain containing 3 JBrowse link 7 125,034,760 125,056,165 RGD:1624291
RGD:1600115
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 JBrowse link 2 250,709,812 250,744,216 RGD:1624291
RGD:1600115
G Slc27a1 solute carrier family 27 member 1 JBrowse link 16 19,997,823 20,016,193 RGD:1600115
RGD:13792537
RGD:1624291
phosphatidylcholine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apoa1 apolipoprotein A1 JBrowse link 8 50,525,091 50,526,875 RGD:1624291
RGD:1600115
G Apoa2 apolipoprotein A2 JBrowse link 13 89,596,872 89,598,805 RGD:1624291
RGD:1600115
G Cept1 choline/ethanolamine phosphotransferase 1 JBrowse link 2 209,118,140 209,162,071 RGD:1624291
G Chka choline kinase alpha JBrowse link 1 219,076,618 219,126,221 RGD:1624291
RGD:1600115
G Chkb choline kinase beta JBrowse link 7 130,404,818 130,408,813 RGD:1624291
G Chpt1 choline phosphotransferase 1 JBrowse link 7 29,019,518 29,070,928 RGD:1624291
G Fabp5 fatty acid binding protein 5 JBrowse link 2 93,981,662 93,985,322 RGD:1624291
G Fgf7 fibroblast growth factor 7 JBrowse link 3 118,315,859 118,368,464 RGD:68696
G Gpat4 glycerol-3-phosphate acyltransferase 4 JBrowse link 16 73,615,949 73,649,769 RGD:1624291
RGD:1600115
G Lcat lecithin cholesterol acyltransferase JBrowse link 19 37,913,333 37,916,799 RGD:1624291
RGD:1600115
G Pcyt1a phosphate cytidylyltransferase 1, choline, alpha JBrowse link 11 71,547,865 71,592,037 RGD:70012
RGD:1624291
RGD:729598
G Pemt phosphatidylethanolamine N-methyltransferase JBrowse link 10 46,339,821 46,404,640 RGD:729486
RGD:13792537
RGD:1600115
G Phka1 phosphorylase kinase regulatory subunit alpha 1 JBrowse link X 72,377,020 72,515,385 RGD:724642
G Slc27a1 solute carrier family 27 member 1 JBrowse link 16 19,997,823 20,016,193 RGD:1600115
RGD:13792537
RGD:1624291
phosphatidylethanolamine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alox15 arachidonate 15-lipoxygenase JBrowse link 10 56,953,692 56,962,145 RGD:1624291
RGD:1600115
G Cept1 choline/ethanolamine phosphotransferase 1 JBrowse link 2 209,118,140 209,162,071 RGD:1600115
RGD:13792537
G Chka choline kinase alpha JBrowse link 1 219,076,618 219,126,221 RGD:1600115
RGD:1624291
G Chkb choline kinase beta JBrowse link 7 130,404,818 130,408,813 RGD:1600115
RGD:1624291
G Etnk1 ethanolamine kinase 1 JBrowse link 4 177,402,904 177,447,047 RGD:1624291
G Etnk2 ethanolamine kinase 2 JBrowse link 13 50,481,178 50,498,991 RGD:1600115
RGD:1624291
G Pcyt2 phosphate cytidylyltransferase 2, ethanolamine JBrowse link 10 109,788,348 109,795,743 RGD:633525
RGD:1600115
G Pisd phosphatidylserine decarboxylase JBrowse link 14 83,298,630 83,347,697 RGD:13792537
G Selenoi selenoprotein I JBrowse link 6 27,473,748 27,512,287 RGD:1624291
RGD:13792537
G Slc27a1 solute carrier family 27 member 1 JBrowse link 16 19,997,823 20,016,193 RGD:1600115
RGD:13792537
RGD:1624291
phosphatidylglycerol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slc27a1 solute carrier family 27 member 1 JBrowse link 16 19,997,823 20,016,193 RGD:1624291
RGD:13792537
phosphatidylinositol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdipt CDP-diacylglycerol--inositol 3-phosphatidyltransferase JBrowse link 1 198,409,186 198,413,497 RGD:724663
RGD:13792537
RGD:1624291
RGD:1626301
G Cds1 CDP-diacylglycerol synthase 1 JBrowse link 14 9,396,511 9,456,964 RGD:1624291
RGD:1600115
G Fgf2 fibroblast growth factor 2 JBrowse link 2 124,081,072 124,134,133 RGD:1624291
G Impa1 inositol monophosphatase 1 JBrowse link 2 93,675,203 93,696,355 RGD:2302239
RGD:1624291
RGD:1600115
G Inppl1 inositol polyphosphate phosphatase-like 1 JBrowse link 1 166,898,177 166,912,524 RGD:1624291
G Pi4k2a phosphatidylinositol 4-kinase type 2 alpha JBrowse link 1 261,337,594 261,362,509 RGD:1624291
RGD:1600115
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link 7 70,483,948 70,498,995 RGD:633581
G Pip5k1a phosphatidylinositol-4-phosphate 5-kinase, type 1, alpha JBrowse link 2 196,227,669 196,270,949 RGD:1624291
RGD:1600115
G Pip5k1b phosphatidylinositol-4-phosphate 5-kinase type 1 beta JBrowse link 1 242,168,462 242,441,247 RGD:1624291
RGD:1600115
G Pip5k1c phosphatidylinositol-4-phosphate 5-kinase type 1 gamma JBrowse link 7 11,267,207 11,294,291 RGD:1624291
G Plcg2 phospholipase C, gamma 2 JBrowse link 19 50,039,410 50,173,543 RGD:1600115
RGD:1624291
G Sh3yl1 SH3 and SYLF domain containing 1 JBrowse link 6 49,851,778 49,895,502 RGD:1624291
RGD:1600115
G Slc27a1 solute carrier family 27 member 1 JBrowse link 16 19,997,823 20,016,193 RGD:1600115
RGD:13792537
RGD:1624291
G Vac14 VAC14 component of PIKFYVE complex JBrowse link 19 40,927,007 41,029,206 RGD:13792537
phosphatidylinositol-3-phosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atm ATM serine/threonine kinase JBrowse link 8 58,015,938 58,119,973 RGD:1600115
G Inpp4a inositol polyphosphate-4-phosphatase type I A JBrowse link 9 43,889,887 44,006,593 RGD:1600115
G Inpp4b inositol polyphosphate-4-phosphatase type II B JBrowse link 19 29,592,889 30,341,528 RGD:1600115
G LOC100910021 phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform-like JBrowse link 8 106,862,181 106,871,375 RGD:13792537
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha JBrowse link 1 185,210,922 185,326,314 RGD:1624291
RGD:13792537
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta JBrowse link 13 49,848,939 49,909,404 RGD:1624291
RGD:13792537
G Pik3c2g phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma JBrowse link 4 173,732,196 174,102,502 RGD:13792537
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 JBrowse link 18 22,964,121 23,047,896 RGD:1624291
RGD:13792537
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha JBrowse link 2 118,831,350 118,861,456 RGD:13792537
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta JBrowse link 8 107,275,849 107,381,088 RGD:1600115
RGD:13792537
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta JBrowse link 5 166,602,053 166,628,028 RGD:13792537
G Pik3cg phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma JBrowse link 6 51,465,696 51,501,234 RGD:13792537
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 JBrowse link 2 31,742,326 31,826,882 RGD:1600115
phosphatidylserine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Plscr1 phospholipid scramblase 1 JBrowse link 8 99,625,523 99,645,882 RGD:1600115
RGD:1624291
G Ptdss1 phosphatidylserine synthase 1 JBrowse link 7 71,294,140 71,356,153 RGD:1600115
G Ptdss2 phosphatidylserine synthase 2 JBrowse link 1 214,122,981 214,148,011 RGD:1600115
RGD:1624291
G Slc27a1 solute carrier family 27 member 1 JBrowse link 16 19,997,823 20,016,193 RGD:1600115
RGD:13792537
RGD:1624291
platelet activating factor biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chpt1 choline phosphotransferase 1 JBrowse link 7 29,019,518 29,070,928 RGD:1624291
RGD:1600115
G Lpcat2 lysophosphatidylcholine acyltransferase 2 JBrowse link 19 15,470,177 15,540,704 RGD:1600115
RGD:1624291
G Pla2g5 phospholipase A2, group V JBrowse link 5 157,247,601 157,268,968 RGD:2303037
positive regulation of 1-phosphatidylinositol-3-kinase activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G App amyloid beta precursor protein JBrowse link 11 24,425,013 24,641,872 RGD:1624291
G Fpr2 formyl peptide receptor 2 JBrowse link 1 59,800,558 59,809,507 RGD:12910993
positive regulation of phosphatidic acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 JBrowse link 7 30,003,429 30,162,095 RGD:1600115
RGD:1624291
positive regulation of phosphatidylcholine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acsl3 acyl-CoA synthetase long-chain family member 3 JBrowse link 9 84,569,601 84,593,565 RGD:1624291
RGD:1600115
G Capn2 calpain 2 JBrowse link 13 100,878,649 100,928,811 RGD:13792658
G Rab38 RAB38, member RAS oncogene family JBrowse link 1 152,072,716 152,153,449 RGD:13524861
positive regulation of phosphatidylinositol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Htr2a 5-hydroxytryptamine receptor 2A JBrowse link 15 56,666,152 56,732,469 RGD:1624291
RGD:1600115
G Htr2b 5-hydroxytryptamine receptor 2B JBrowse link 9 93,112,781 93,130,135 RGD:1600115
RGD:1624291
G Htr2c 5-hydroxytryptamine receptor 2C JBrowse link X 118,084,520 118,318,040 RGD:1624291
G Zp3 zona pellucida glycoprotein 3 JBrowse link 12 23,735,225 23,752,734 RGD:1600115
RGD:1624291
positive regulation of phospholipid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adgrf5 adhesion G protein-coupled receptor F5 JBrowse link 9 20,091,121 20,195,706 RGD:1624291
RGD:1600115
G Pc pyruvate carboxylase JBrowse link 1 219,759,157 219,859,854 RGD:10047307
regulation of phosphatidylcholine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fabp3 fatty acid binding protein 3 JBrowse link 5 148,528,854 148,535,597 RGD:1624291
RGD:1600115
regulation of phospholipid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 JBrowse link 9 71,882,108 71,911,645 RGD:1624291
RGD:1600115
sphinganine-1-phosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sphk2 sphingosine kinase 2 JBrowse link 1 101,692,972 101,700,604 RGD:1600115
RGD:1624291
sphingomyelin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pemt phosphatidylethanolamine N-methyltransferase JBrowse link 10 46,339,821 46,404,640 RGD:1624291
G Sgms1 sphingomyelin synthase 1 JBrowse link 1 250,692,448 250,951,685 RGD:1600115
RGD:13792537
RGD:1624291
G Sgms2 sphingomyelin synthase 2 JBrowse link 2 236,458,276 236,530,667 RGD:1624291
RGD:13792537
RGD:1600115
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 JBrowse link 17 11,856,525 11,895,566 RGD:1600115
RGD:1624291
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 JBrowse link 6 111,334,408 111,417,960 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19317
    cellular process 17226
      cellular metabolic process 10566
        cellular biosynthetic process 5761
          phospholipid biosynthetic process 166
            4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process 0
            5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate biosynthetic process 0
            GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthetic process 0
            Kdo2-lipid A biosynthetic process 0
            beta-L-Ara4N-lipid A biosynthetic process 0
            ceramide phosphoethanolamine biosynthetic process 2
            copal-8-ol diphosphate(3-) biosynthetic process 0
            dimethylallyl diphosphate biosynthetic process 1
            dolichyl diphosphate biosynthetic process 3
            dolichyl monophosphate biosynthetic process 1
            farnesyl diphosphate biosynthetic process + 5
            geranyl diphosphate biosynthetic process 2
            geranylgeranyl diphosphate biosynthetic process 1
            glycerophospholipid biosynthetic process + 122
            isopentenyl diphosphate biosynthetic process + 8
            lipid A biosynthetic process 0
            mannosyl-inositol phosphorylceramide biosynthetic process 0
            negative regulation of phospholipid biosynthetic process + 5
            phytyl diphosphate biosynthetic process 0
            positive regulation of phospholipid biosynthetic process + 12
            regulation of phospholipid biosynthetic process + 19
            sphinganine-1-phosphate biosynthetic process 1
            sphingomyelin biosynthetic process 5
Path 2
Term Annotations click to browse term
  biological_process 19317
    metabolic process 11540
      cellular metabolic process 10566
        phosphorus metabolic process 3212
          organophosphate metabolic process 917
            organophosphate biosynthetic process 472
              phospholipid biosynthetic process 166
                4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process 0
                5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate biosynthetic process 0
                GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthetic process 0
                Kdo2-lipid A biosynthetic process 0
                beta-L-Ara4N-lipid A biosynthetic process 0
                ceramide phosphoethanolamine biosynthetic process 2
                copal-8-ol diphosphate(3-) biosynthetic process 0
                dimethylallyl diphosphate biosynthetic process 1
                dolichyl diphosphate biosynthetic process 3
                dolichyl monophosphate biosynthetic process 1
                farnesyl diphosphate biosynthetic process + 5
                geranyl diphosphate biosynthetic process 2
                geranylgeranyl diphosphate biosynthetic process 1
                glycerophospholipid biosynthetic process + 122
                isopentenyl diphosphate biosynthetic process + 8
                lipid A biosynthetic process 0
                mannosyl-inositol phosphorylceramide biosynthetic process 0
                negative regulation of phospholipid biosynthetic process + 5
                phytyl diphosphate biosynthetic process 0
                positive regulation of phospholipid biosynthetic process + 12
                regulation of phospholipid biosynthetic process + 19
                sphinganine-1-phosphate biosynthetic process 1
                sphingomyelin biosynthetic process 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.