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ONTOLOGY REPORT - ANNOTATIONS


Term:aerobic respiration
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Accession:GO:0009060 term browser browse the term
Definition:The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
Synonyms:xref: MetaCyc:PWY-3781;   Wikipedia:Cellular_respiration#Aerobic_respiration


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aerobic respiration term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adsl adenylosuccinate lyase JBrowse link 7 122,157,201 122,192,328 RGD:1598765
G Atp5f1d ATP synthase F1 subunit delta JBrowse link 7 12,426,807 12,432,120 RGD:1600115
RGD:1624291
G Bloc1s1 biogenesis of lysosomal organelles complex-1, subunit 1 JBrowse link 7 3,342,630 3,346,238 RGD:1624291
RGD:1600115
G Cat catalase JBrowse link 3 93,379,872 93,412,058 RGD:1624291
G Cox10 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 JBrowse link 10 50,439,778 50,563,920 RGD:1624291
G Cox6a1 cytochrome c oxidase subunit 6A1 JBrowse link 12 47,024,442 47,027,495 RGD:13792537
G Cox6a2 cytochrome c oxidase subunit 6A2 JBrowse link 1 199,624,037 199,626,255 RGD:13792537
G Fxn frataxin JBrowse link 1 242,123,975 242,152,834 RGD:1600115
RGD:1624291
G LOC100362172 LRRGT00112-like JBrowse link 17 22,655,291 22,678,983 RGD:13792537
G LOC259246 alpha-2u globulin PGCL1 RGD:1600115
G Mdh2 malate dehydrogenase 2 JBrowse link 12 23,941,451 23,954,406 RGD:1624291
G Mt-co1 mitochondrially encoded cytochrome c oxidase I JBrowse link MT 5,323 6,867 RGD:13792537
G Mt-co3 mitochondrially encoded cytochrome c oxidase III JBrowse link MT 8,599 9,382 RGD:13792537
G Mt-nd1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 JBrowse link MT 2,740 3,694 RGD:13792537
G Mt-nd4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 JBrowse link MT 10,160 11,537 RGD:13792537
G Mtfr1 mitochondrial fission regulator 1 JBrowse link 2 104,005,696 104,040,914 RGD:1624291
RGD:13792537
RGD:1600115
G Mtfr1l mitochondrial fission regulator 1-like JBrowse link 5 152,736,580 152,746,683 RGD:13792537
G Mtfr2 mitochondrial fission regulator 2 JBrowse link 1 15,834,779 15,850,424 RGD:1624291
RGD:13792537
G Ndufs7 NADH:ubiquinone oxidoreductase core subunit S7 JBrowse link 7 12,318,776 12,326,403 RGD:13792537
G Ndufs8 NADH:ubiquinone oxidoreductase core subunit S8 JBrowse link 1 219,141,289 219,144,610 RGD:13792537
G Oxa1l OXA1L, mitochondrial inner membrane protein JBrowse link 15 33,004,957 33,012,584 RGD:1624291
G Pank2 pantothenate kinase 2 JBrowse link 3 123,807,911 123,841,797 RGD:1624291
G Sdhb succinate dehydrogenase complex iron sulfur subunit B JBrowse link 5 159,484,378 159,505,063 RGD:13792537
G Sirt3 sirtuin 3 JBrowse link 1 213,613,502 213,636,061 RGD:1624291
G Ucn urocortin JBrowse link 6 26,602,144 26,602,974 RGD:5508185
G Uqcr10 ubiquinol-cytochrome c reductase, complex III subunit X JBrowse link 14 84,935,480 84,937,741 RGD:13792537
G Uqcrb ubiquinol-cytochrome c reductase binding protein JBrowse link 7 71,264,501 71,269,869 RGD:13792537
G Uqcrh ubiquinol-cytochrome c reductase hinge protein JBrowse link 5 134,919,040 134,927,235 RGD:13792537
mitochondrial electron transport, cytochrome c to oxygen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07071968.1 RGD:13792537
G AC096404.1 RGD:13792537
G AC114204.1 RGD:13792537
G AC128290.1 RGD:13792537
G Afg1l AFG1 like ATPase JBrowse link 20 47,038,824 47,208,812 RGD:1624291
G Cox4i1 cytochrome c oxidase subunit 4i1 JBrowse link 19 54,245,958 54,252,198 RGD:13792537
G Cox4i2 cytochrome c oxidase subunit 4i2 JBrowse link 3 148,234,546 148,245,424 RGD:13792537
G Cox5a cytochrome c oxidase subunit 5A JBrowse link 8 62,298,358 62,309,765 RGD:13792537
G Cox5b cytochrome c oxidase subunit 5B JBrowse link 9 43,259,706 43,262,039 RGD:13792537
G Cox6a1 cytochrome c oxidase subunit 6A1 JBrowse link 12 47,024,442 47,027,495 RGD:13792537
G Cox6a2 cytochrome c oxidase subunit 6A2 JBrowse link 1 199,624,037 199,626,255 RGD:13792537
G Cox7c cytochrome c oxidase subunit 7C JBrowse link 2 14,699,878 14,701,903 RGD:13792537
G Cox8b cytochrome c oxidase, subunit VIIIb JBrowse link 1 213,648,787 213,650,247 RGD:727764
G Cycs cytochrome c, somatic JBrowse link 4 80,331,226 80,333,326 RGD:2300408
RGD:13792537
G Cyct cytochrome c, testis JBrowse link 3 63,204,779 63,211,847 RGD:13792537
G LOC100363502 cytochrome c, somatic-like JBrowse link 18 62,475,574 62,476,771 RGD:13792537
G Mt-co1 mitochondrially encoded cytochrome c oxidase I JBrowse link MT 5,323 6,867 RGD:13792537
G Mt-co3 mitochondrially encoded cytochrome c oxidase III JBrowse link MT 8,599 9,382 RGD:13792537
G Proca1 protein interacting with cyclin A1 JBrowse link 10 65,454,451 65,469,491 RGD:1600115
regulation of aerobic respiration term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actn3 actinin alpha 3 JBrowse link 1 220,120,532 220,136,460 RGD:1624291
G Bnip3 BCL2 interacting protein 3 JBrowse link 1 211,248,098 211,265,282 RGD:1624291
G Cbfa2t3 CBFA2/RUNX1 partner transcriptional co-repressor 3 JBrowse link 19 55,438,409 55,510,652 RGD:1624291
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:1624291
RGD:1600115
G Ide insulin degrading enzyme JBrowse link 1 255,914,465 256,014,168 RGD:1624291
G Nop53 NOP53 ribosome biogenesis factor JBrowse link 1 77,836,522 77,843,991 RGD:1624291
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link 7 70,824,718 70,829,822 RGD:1624291
G Vcp valosin-containing protein JBrowse link 5 58,426,548 58,445,953 RGD:1624291
tricarboxylic acid cycle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC141220.4 RGD:1600115
G Aco1 aconitase 1 JBrowse link 5 56,425,076 56,481,218 RGD:13792537
G Aco2 aconitase 2 JBrowse link 7 123,102,493 123,145,608 RGD:2306877
RGD:13792537
RGD:1600115
RGD:1624291
G Cs citrate synthase JBrowse link 7 2,752,680 2,778,963 RGD:2306828
RGD:13792537
RGD:1600115
RGD:2306877
G Dhtkd1 dehydrogenase E1 and transketolase domain containing 1 JBrowse link 17 76,306,585 76,358,058 RGD:1600115
G Dlat dihydrolipoamide S-acetyltransferase JBrowse link 8 55,062,549 55,087,832 RGD:1600115
G Dlst dihydrolipoamide S-succinyltransferase JBrowse link 6 108,936,534 108,961,322 RGD:1359804
RGD:1600115
RGD:1624291
G Fh fumarate hydratase JBrowse link 13 93,651,486 93,677,371 RGD:2306828
RGD:13792537
RGD:1600115
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 JBrowse link 9 71,882,108 71,911,645 RGD:1600115
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 JBrowse link 1 141,874,354 141,893,674 RGD:1600115
G Idh3a isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha JBrowse link 8 59,164,601 59,183,899 RGD:2306828
RGD:13792537
RGD:1624291
RGD:1600115
G Idh3b isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta JBrowse link 3 122,808,564 122,813,638 RGD:2306828
RGD:13792537
G Idh3g isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma JBrowse link X 156,999,803 157,008,735 RGD:633073
RGD:13792537
RGD:1600115
RGD:2306828
G Ireb2 iron responsive element binding protein 2 JBrowse link 8 59,450,974 59,503,634 RGD:13792537
G LOC100125384 hypothetical protein LOC100125384 JBrowse link 1 105,935,449 105,936,919 RGD:13792537
G LOC103690168 probable isocitrate dehydrogenase [NAD] gamma 2, mitochondrial JBrowse link 1 106,404,925 106,410,154 RGD:13792537
G LOC103693780 2-oxoglutarate dehydrogenase, mitochondrial-like JBrowse link 14 86,599,906 86,614,963 RGD:13792537
G Mdh1 malate dehydrogenase 1 JBrowse link 14 106,378,349 106,393,642 RGD:13792537
G Mdh1b malate dehydrogenase 1B JBrowse link 9 70,403,612 70,450,204 RGD:13792537
G Mdh2 malate dehydrogenase 2 JBrowse link 12 23,941,451 23,954,406 RGD:2306828
RGD:13792537
G Ogdh oxoglutarate dehydrogenase JBrowse link 14 86,414,924 86,481,903 RGD:2306877
RGD:13792537
G Ogdhl oxoglutarate dehydrogenase L JBrowse link 16 8,497,495 8,523,552 RGD:13792537
G Pdha1 pyruvate dehydrogenase E1 subunit alpha 1 JBrowse link X 37,329,779 37,343,410 RGD:1600115
G Pdha2 pyruvate dehydrogenase E1 subunit alpha 2 JBrowse link 2 246,736,449 246,737,997 RGD:1600115
G Pdhb pyruvate dehydrogenase E1 subunit beta JBrowse link 15 18,540,826 18,546,855 RGD:1600115
G Sdha succinate dehydrogenase complex flavoprotein subunit A JBrowse link 1 31,545,631 31,570,601 RGD:1600115
G Sdhaf2 succinate dehydrogenase complex assembly factor 2 JBrowse link 1 226,543,671 226,572,414 RGD:13792537
G Sdhb succinate dehydrogenase complex iron sulfur subunit B JBrowse link 5 159,484,378 159,505,063 RGD:1600115
G Sdhc succinate dehydrogenase complex subunit C JBrowse link 13 89,498,047 89,518,979 RGD:1600115
G Sdhd succinate dehydrogenase complex subunit D JBrowse link 8 55,028,125 55,037,604 RGD:1600115
RGD:13792537
RGD:1624291
G Sucla2 succinate-CoA ligase ADP-forming subunit beta JBrowse link 15 55,461,695 55,516,954 RGD:2306915
RGD:13792537
RGD:1600115
G Suclg1 succinate-CoA ligase GDP/ADP-forming subunit alpha JBrowse link 4 101,181,315 101,210,692 RGD:2306915
RGD:13792537
RGD:1600115
G Suclg2 succinate-CoA ligase GDP-forming subunit beta JBrowse link 4 127,552,100 127,824,970 RGD:2306915
RGD:13792537
RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19678
    metabolic process 11954
      oxidation-reduction process 1106
        energy derivation by oxidation of organic compounds 263
          cellular respiration 173
            aerobic respiration 82
              aerobic electron transport chain + 19
              aerobic respiration, using ammonia as electron donor 0
              aerobic respiration, using arsenite as electron donor 0
              aerobic respiration, using carbon monoxide as electron donor 0
              aerobic respiration, using ferrous ions as electron donor 0
              aerobic respiration, using hydrogen as electron donor 0
              aerobic respiration, using nitrite as electron donor 0
              aerobic respiration, using sulfur or sulfate as electron donor 0
              alternative respiration 0
              regulation of aerobic respiration 8
              tricarboxylic acid cycle + 33
Path 2
Term Annotations click to browse term
  biological_process 19678
    metabolic process 11954
      cellular metabolic process 10782
        generation of precursor metabolites and energy 496
          energy derivation by oxidation of organic compounds 263
            cellular respiration 173
              aerobic respiration 82
                aerobic electron transport chain + 19
                aerobic respiration, using ammonia as electron donor 0
                aerobic respiration, using arsenite as electron donor 0
                aerobic respiration, using carbon monoxide as electron donor 0
                aerobic respiration, using ferrous ions as electron donor 0
                aerobic respiration, using hydrogen as electron donor 0
                aerobic respiration, using nitrite as electron donor 0
                aerobic respiration, using sulfur or sulfate as electron donor 0
                alternative respiration 0
                regulation of aerobic respiration 8
                tricarboxylic acid cycle + 33
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.