Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:nucleoside metabolic process
go back to main search page
Accession:GO:0009116 term browser browse the term
Definition:The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).
Synonyms:exact_synonym: nucleoside metabolism


show annotations for term's descendants       view all columns           Sort by:
 
nucleoside metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase JBrowse link 9 78,862,013 78,882,061 RGD:5144068
G Dnph1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 JBrowse link 9 16,845,764 16,848,514 RGD:1600115
G LOC314140 ribose-phosphate pyrophosphokinase I -like JBrowse link 6 78,172,762 78,181,608 RGD:1600115
G Nt5c1b 5'-nucleotidase, cytosolic IB JBrowse link 6 36,089,450 36,106,843 RGD:1624291
G Ppat phosphoribosyl pyrophosphate amidotransferase JBrowse link 14 33,580,541 33,614,919 RGD:1600115
G Prps1 phosphoribosyl pyrophosphate synthetase 1 JBrowse link X 111,798,233 111,820,270 RGD:1600115
G Prps1l1 phosphoribosyl pyrophosphate synthetase 1-like 1 JBrowse link 6 54,417,903 54,419,593 RGD:1600115
G Prps2 phosphoribosyl pyrophosphate synthetase 2 JBrowse link X 28,435,275 28,472,882 RGD:1600115
G Prpsap1 phosphoribosyl pyrophosphate synthetase-associated protein 1 JBrowse link 10 105,430,516 105,492,154 RGD:1600115
G Prpsap2 phosphoribosyl pyrophosphate synthetase-associated protein 2 JBrowse link 10 48,008,799 48,044,435 RGD:1600115
G Uckl1 uridine-cytidine kinase 1-like 1 JBrowse link 3 177,066,022 177,078,611 RGD:1600115
G Umps uridine monophosphate synthetase JBrowse link 11 70,034,181 70,044,590 RGD:1600115
G Upp2 uridine phosphorylase 2 JBrowse link 3 44,806,106 44,846,464 RGD:1600115
G Uprt uracil phosphoribosyltransferase homolog JBrowse link X 75,382,553 75,408,541 RGD:1600115
adenosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nt5e 5' nucleotidase, ecto JBrowse link 8 95,969,002 96,012,733 RGD:1624291
RGD:1600115
adenosine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ada adenosine deaminase JBrowse link 3 160,115,840 160,139,947 RGD:1600115
RGD:13792537
RGD:1624291
G Adal adenosine deaminase-like JBrowse link 3 113,091,696 113,109,841 RGD:13792537
adenosine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acp3 acid phosphatase 3 JBrowse link 8 112,838,574 112,884,062 RGD:1600115
RGD:1624291
G Ada adenosine deaminase JBrowse link 3 160,115,840 160,139,947 RGD:631747
RGD:2291861
RGD:2291857
RGD:2291855
RGD:2291853
G Adk adenosine kinase JBrowse link 15 3,033,535 3,435,888 RGD:2291861
G Cyp11b1 cytochrome P450, family 11, subfamily b, polypeptide 1 RGD:4145529
G Nt5c1a 5'-nucleotidase, cytosolic IA JBrowse link 5 140,888,862 140,909,322 RGD:2291861
RGD:13792537
G Nt5c1b 5'-nucleotidase, cytosolic IB JBrowse link 6 36,089,450 36,106,843 RGD:2291861
RGD:13792537
G Nt5c2 5'-nucleotidase, cytosolic II JBrowse link 1 266,652,966 266,782,935 RGD:2291861
RGD:13792537
G Nt5c3a 5'-nucleotidase, cytosolic IIIA JBrowse link 4 87,238,325 87,281,234 RGD:2291861
G Nt5e 5' nucleotidase, ecto JBrowse link 8 95,969,002 96,012,733 RGD:2291861
G Ptgdr prostaglandin D2 receptor JBrowse link 15 19,195,606 19,196,508 RGD:1624291
cytidine deamination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aicda activation-induced cytidine deaminase JBrowse link 4 155,359,909 155,371,104 RGD:1624291
RGD:1600115
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 4 155,386,367 155,414,034 RGD:1600115
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 JBrowse link 9 14,529,218 14,542,731 RGD:1600115
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 JBrowse link 7 121,108,108 121,128,346 RGD:1600115
G Cda cytidine deaminase JBrowse link 5 156,703,579 156,734,541 RGD:2316616
RGD:13792537
RGD:1624291
G Cdadc1 cytidine and dCMP deaminase domain containing 1 JBrowse link 15 39,865,094 39,894,122 RGD:1624291
RGD:1600115
G LOC100909857 cytidine deaminase-like JBrowse link 5 156,756,678 156,781,306 RGD:13792537
cytidine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 4 155,386,367 155,414,034 RGD:8553657
deoxyadenosine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ada adenosine deaminase JBrowse link 3 160,115,840 160,139,947 RGD:1624291
RGD:1600115
deoxycytidine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dck deoxycytidine kinase JBrowse link 14 20,935,442 20,952,939 RGD:2300395
RGD:2300399
RGD:2300398
G Tk2 thymidine kinase 2 JBrowse link 19 917,203 939,236 RGD:5134349
deoxyribonucleoside catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dera deoxyribose-phosphate aldolase JBrowse link 4 171,748,254 171,826,414 RGD:1624291
RGD:1600115
GDP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Guk1 guanylate kinase 1 JBrowse link 10 45,535,617 45,552,455 RGD:5147877
GDP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nudt18 nudix hydrolase 18 JBrowse link 15 52,265,557 52,268,081 RGD:1624291
RGD:1600115
GDP metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dlgap2 DLG associated protein 2 JBrowse link 16 79,872,238 80,596,977 RGD:1600115
G Lrguk leucine-rich repeats and guanylate kinase domain containing JBrowse link 4 61,419,987 61,544,748 RGD:1600115
GMP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gmps guanine monophosphate synthase JBrowse link 2 154,555,967 154,590,662 RGD:1599004
RGD:13792537
RGD:1600115
G Impdh1 inosine monophosphate dehydrogenase 1 JBrowse link 4 56,478,383 56,493,987 RGD:1600115
G Impdh2 inosine monophosphate dehydrogenase 2 JBrowse link 8 117,346,983 117,351,619 RGD:1600115
GMP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hprt1 hypoxanthine phosphoribosyltransferase 1 JBrowse link X 158,196,640 158,228,815 RGD:1624291
RGD:1600115
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase JBrowse link X 158,623,231 158,655,277 RGD:1600115
G Prtfdc1 phosphoribosyl transferase domain containing 1 JBrowse link 17 87,926,242 88,037,040 RGD:1624291
GMP metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dlgap2 DLG associated protein 2 JBrowse link 16 79,872,238 80,596,977 RGD:1600115
G Gmpr2 guanosine monophosphate reductase 2 JBrowse link 15 34,352,857 34,362,074 RGD:1624291
G Guk1 guanylate kinase 1 JBrowse link 10 45,535,617 45,552,455 RGD:5147867
G Lrguk leucine-rich repeats and guanylate kinase domain containing JBrowse link 4 61,419,987 61,544,748 RGD:1600115
GMP salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hprt1 hypoxanthine phosphoribosyltransferase 1 JBrowse link X 158,196,640 158,228,815 RGD:13792537
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase JBrowse link X 158,623,231 158,655,277 RGD:13792537
GTP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Decr2 2,4-dienoyl-CoA reductase 2 JBrowse link 10 15,451,850 15,460,227 RGD:1600115
G Impdh1 inosine monophosphate dehydrogenase 1 JBrowse link 4 56,478,383 56,493,987 RGD:13792537
G Impdh2 inosine monophosphate dehydrogenase 2 JBrowse link 8 117,346,983 117,351,619 RGD:13792537
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 JBrowse link 10 81,657,152 81,666,542 RGD:1600115
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 JBrowse link 10 81,648,216 81,653,717 RGD:729254
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 JBrowse link 10 14,258,232 14,259,365 RGD:1600115
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 JBrowse link 10 15,461,567 15,465,422 RGD:1600115
G Nme5 NME/NM23 family member 5 JBrowse link 18 27,357,460 27,374,641 RGD:1600115
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 JBrowse link 8 117,920,912 117,928,148 RGD:1600115
G Nme7 NME/NM23 family member 7 JBrowse link 13 82,607,844 82,737,383 RGD:1600115
GTP metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak3 adenylate kinase 3 JBrowse link 1 247,144,486 247,169,690 RGD:1624291
RGD:1600115
G Ak4 adenylate kinase 4 JBrowse link 5 120,250,318 120,309,153 RGD:1624291
RGD:1600115
G Ampd2 adenosine monophosphate deaminase 2 JBrowse link 2 210,861,624 210,874,348 RGD:1624291
G Ampd3 adenosine monophosphate deaminase 3 JBrowse link 1 175,585,301 175,630,479 RGD:1600115
RGD:1624291
G Efl1 elongation factor like GTPase 1 JBrowse link 1 144,601,425 144,740,634 RGD:1624291
RGD:1600115
G Gimap7 GTPase, IMAP family member 7 JBrowse link 4 78,354,335 78,358,505 RGD:1624291
G Gnai3 G protein subunit alpha i3 JBrowse link 2 210,896,779 210,934,733 RGD:1624291
RGD:1600115
G Gtpbp1 GTP binding protein 1 JBrowse link 7 120,923,274 120,947,723 RGD:8553842
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 7 132,857,311 133,018,549 RGD:1624291
RGD:1600115
G Mfn1 mitofusin 1 JBrowse link 2 118,929,738 118,971,689 RGD:1624291
RGD:1600115
G Opa1 OPA1, mitochondrial dynamin like GTPase JBrowse link 11 74,717,600 74,793,902 RGD:1624291
RGD:1600115
G Rab23 RAB23, member RAS oncogene family JBrowse link 9 38,469,784 38,496,185 RGD:1624291
RGD:1600115
G Ran RAN, member RAS oncogene family JBrowse link 12 31,319,556 31,324,105 RGD:1600115
RGD:1624291
G Rhoa ras homolog family member A JBrowse link 8 117,082,440 117,116,244 RGD:7248703
G Rhoq ras homolog family member Q JBrowse link 6 10,533,151 10,568,582 RGD:1624291
RGD:1600115
inosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ada adenosine deaminase JBrowse link 3 160,115,840 160,139,947 RGD:1624291
RGD:13792537
RGD:1600115
G Adal adenosine deaminase-like JBrowse link 3 113,091,696 113,109,841 RGD:13792537
G Ak1 adenylate kinase 1 JBrowse link 3 11,652,143 11,659,135 RGD:5134369
inosine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnp purine nucleoside phosphorylase JBrowse link 15 27,875,883 27,883,566 RGD:1624291
RGD:1600115
nicotinamide riboside catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mtap methylthioadenosine phosphorylase JBrowse link 5 107,711,077 107,777,530 RGD:1624291
G Pnp purine nucleoside phosphorylase JBrowse link 15 27,875,883 27,883,566 RGD:1624291
RGD:1600115
purine deoxyribonucleoside metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dguok deoxyguanosine kinase JBrowse link 4 115,180,433 115,208,061 RGD:1624291
RGD:1600115
purine nucleoside metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Macrod1 mono-ADP ribosylhydrolase 1 JBrowse link 1 222,310,916 222,451,485 RGD:1600115
RGD:1624291
G Macrod2 mono-ADP ribosylhydrolase 2 JBrowse link 3 135,729,839 136,422,082 RGD:1624291
G Oard1 O-acyl-ADP-ribose deacylase 1 JBrowse link 9 14,542,957 14,551,519 RGD:1624291
G Pnp purine nucleoside phosphorylase JBrowse link 15 27,875,883 27,883,566 RGD:2291865
purine ribonucleoside catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Enpp4 ectonucleotide pyrophosphatase/phosphodiesterase 4 JBrowse link 9 19,446,807 19,457,946 RGD:1624291
RGD:1600115
purine ribonucleoside salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adk adenosine kinase JBrowse link 15 3,033,535 3,435,888 RGD:631740
RGD:1600115
RGD:1624291
G Aprt adenine phosphoribosyl transferase JBrowse link 19 55,387,288 55,389,256 RGD:1624291
RGD:1600115
G Hprt1 hypoxanthine phosphoribosyltransferase 1 JBrowse link X 158,196,640 158,228,815 RGD:1624291
RGD:13792537
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase JBrowse link X 158,623,231 158,655,277 RGD:13792537
G Mtap methylthioadenosine phosphorylase JBrowse link 5 107,711,077 107,777,530 RGD:1600115
G Prtfdc1 phosphoribosyl transferase domain containing 1 JBrowse link 17 87,926,242 88,037,040 RGD:1600115
pyrimidine nucleoside catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Upb1 beta-ureidopropionase 1 JBrowse link 20 14,167,383 14,193,724 RGD:1600115
RGD:1624291
pyrimidine nucleoside metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tymp thymidine phosphorylase JBrowse link 7 130,342,481 130,347,845 RGD:1624291
RGD:1600115
queuosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 JBrowse link 8 22,447,057 22,454,328 RGD:724772
S-adenosylhomocysteine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahcy adenosylhomocysteinase JBrowse link 3 150,587,833 150,603,057 RGD:730275
RGD:1624291
S-adenosylhomocysteine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Comt catechol-O-methyltransferase JBrowse link 11 86,715,981 86,735,630 RGD:1359089
G Gamt guanidinoacetate N-methyltransferase JBrowse link 7 12,314,848 12,317,998 RGD:1359081
G Gnmt glycine N-methyltransferase JBrowse link 9 16,565,274 16,568,626 RGD:1359070
RGD:13792537
RGD:12793006
G Icmt isoprenylcysteine carboxyl methyltransferase JBrowse link 5 169,475,270 169,482,031 RGD:2289655
G LOC100911564 glycine N-methyltransferase-like JBrowse link 9 16,314,136 16,317,575 RGD:13792537
G Pcmt1 protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 JBrowse link 1 1,734,863 1,767,759 RGD:729481
G Pemt phosphatidylethanolamine N-methyltransferase JBrowse link 10 46,339,821 46,404,640 RGD:729486
G Pnmt phenylethanolamine-N-methyltransferase JBrowse link 10 86,340,893 86,342,501 RGD:1359087
S-adenosylmethioninamine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Amd1 adenosylmethionine decarboxylase 1 JBrowse link 20 45,384,000 45,399,694 RGD:1600115
S-adenosylmethioninamine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Icmt isoprenylcysteine carboxyl methyltransferase JBrowse link 5 169,475,270 169,482,031 RGD:2289655
thymidine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dpyd dihydropyrimidine dehydrogenase JBrowse link 2 221,823,692 222,694,627 RGD:1624291
RGD:1600115
thymidine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tk1 thymidine kinase 1 JBrowse link 10 106,817,556 106,828,888 RGD:2317232
RGD:13792537
G Tk2 thymidine kinase 2 JBrowse link 19 917,203 939,236 RGD:5134349
uridine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Upp1 uridine phosphorylase 1 JBrowse link 14 89,314,234 89,334,060 RGD:1624291
RGD:1600115
uridine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Upp1 uridine phosphorylase 1 JBrowse link 14 89,314,234 89,334,060 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19245
    metabolic process 11438
      organic substance metabolic process 10836
        organonitrogen compound metabolic process 6815
          nucleoside metabolic process 93
            deoxyribonucleoside metabolic process + 7
            negative regulation of nucleoside metabolic process 0
            nucleoside biosynthetic process + 24
            nucleoside catabolic process + 21
            positive regulation of nucleoside metabolic process 0
            purine nucleoside metabolic process + 64
            pyridine nucleoside metabolic process + 2
            pyrimidine nucleoside metabolic process + 14
            regulation of nucleoside metabolic process + 0
            ribonucleoside metabolic process + 69
Path 2
Term Annotations click to browse term
  biological_process 19245
    metabolic process 11438
      cellular metabolic process 10461
        cellular aromatic compound metabolic process 5385
          nucleobase-containing compound metabolic process 5163
            nucleobase-containing small molecule metabolic process 569
              nucleoside metabolic process 93
                deoxyribonucleoside metabolic process + 7
                negative regulation of nucleoside metabolic process 0
                nucleoside biosynthetic process + 24
                nucleoside catabolic process + 21
                positive regulation of nucleoside metabolic process 0
                purine nucleoside metabolic process + 64
                pyridine nucleoside metabolic process + 2
                pyrimidine nucleoside metabolic process + 14
                regulation of nucleoside metabolic process + 0
                ribonucleoside metabolic process + 69
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.