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ONTOLOGY REPORT - ANNOTATIONS


Term:purine ribonucleotide biosynthetic process
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Accession:GO:0009152 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: purine ribonucleotide anabolism;   purine ribonucleotide biosynthesis;   purine ribonucleotide formation;   purine ribonucleotide synthesis


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'de novo' AMP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adsl adenylosuccinate lyase JBrowse link 7 122,157,201 122,192,328 RGD:1600115
RGD:13792537
G Adss adenylosuccinate synthase JBrowse link 13 95,913,426 95,943,761 RGD:1600115
RGD:13792537
G Adssl1 adenylosuccinate synthase like 1 JBrowse link 6 137,184,818 137,206,694 RGD:1600115
RGD:13792537
'de novo' IMP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07036855.1 RGD:1600115
G Adsl adenylosuccinate lyase JBrowse link 7 122,157,201 122,192,328 RGD:1600115
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase JBrowse link 9 78,862,013 78,882,061 RGD:70804
RGD:13792537
RGD:1600115
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase JBrowse link 11 31,780,477 31,805,728 RGD:1600115
G LOC100910308 multifunctional protein ADE2-like JBrowse link 14 33,968,258 33,977,367 RGD:1600115
G Paics phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase JBrowse link 14 33,563,884 33,580,944 RGD:1600115
G Pfas phosphoribosylformylglycinamidine synthase JBrowse link 10 55,571,881 55,593,384 RGD:1600115
G Ppat phosphoribosyl pyrophosphate amidotransferase JBrowse link 14 33,580,541 33,614,919 RGD:1600115
3'-phosphoadenosine 5'-phosphosulfate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Papss1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 JBrowse link 2 236,605,695 236,680,772 RGD:1624291
RGD:13792537
G Papss2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 JBrowse link 1 251,145,264 251,230,716 RGD:13792537
acetyl-CoA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acat1 acetyl-CoA acetyltransferase 1 JBrowse link 8 58,166,990 58,195,884 RGD:1624291
G Acly ATP citrate lyase JBrowse link 10 88,392,248 88,442,845 RGD:631761
RGD:13792537
RGD:1600115
RGD:1624291
G Acss1 acyl-CoA synthetase short-chain family member 1 JBrowse link 3 146,420,346 146,470,293 RGD:1624291
G Acss2 acyl-CoA synthetase short-chain family member 2 JBrowse link 3 151,032,925 151,075,856 RGD:1624291
G Mlycd malonyl-CoA decarboxylase JBrowse link 19 52,032,950 52,048,773 RGD:1600790
RGD:13792537
RGD:1624291
RGD:1600115
G Ppcs phosphopantothenoylcysteine synthetase JBrowse link 5 138,466,298 138,470,108 RGD:1624291
acetyl-CoA biosynthetic process from acetate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acss1 acyl-CoA synthetase short-chain family member 1 JBrowse link 3 146,420,346 146,470,293 RGD:1600115
acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dlat dihydrolipoamide S-acetyltransferase JBrowse link 8 55,062,549 55,087,832 RGD:1599112
RGD:13792537
G Dld dihydrolipoamide dehydrogenase JBrowse link 6 50,597,677 50,618,694 RGD:1599112
G Pdha1 pyruvate dehydrogenase E1 subunit alpha 1 JBrowse link X 37,329,779 37,343,410 RGD:1599112
RGD:13792537
RGD:1624291
RGD:1600115
G Pdha1l1 pyruvate dehydrogenase (lipoamide) alpha 1-like 1 JBrowse link 16 88,344,440 88,347,335 RGD:1600115
G Pdha2 pyruvate dehydrogenase E1 subunit alpha 2 JBrowse link 2 246,736,449 246,737,997 RGD:1599112
RGD:13792537
G Pdhb pyruvate dehydrogenase E1 subunit beta JBrowse link 15 18,540,826 18,546,855 RGD:1599112
RGD:13792537
RGD:1624291
RGD:1600115
G Pdhx pyruvate dehydrogenase complex, component X JBrowse link 3 92,910,300 92,933,725 RGD:1600115
G Pdk4 pyruvate dehydrogenase kinase 4 JBrowse link 4 30,546,772 30,556,774 RGD:729541
ADP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak1 adenylate kinase 1 JBrowse link 3 11,652,143 11,659,135 RGD:5134369
G Ak2 adenylate kinase 2 JBrowse link 5 147,185,474 147,204,050 RGD:5490208
RGD:1600115
G Ak3 adenylate kinase 3 JBrowse link 1 247,144,486 247,169,690 RGD:5490208
RGD:1600115
RGD:5490216
G Ak4 adenylate kinase 4 JBrowse link 5 120,250,318 120,309,153 RGD:1600115
AMP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adk adenosine kinase JBrowse link 15 3,033,535 3,435,888 RGD:1600115
G Adsl adenylosuccinate lyase JBrowse link 7 122,157,201 122,192,328 RGD:5135303
RGD:1624291
G Adss adenylosuccinate synthase JBrowse link 13 95,913,426 95,943,761 RGD:1624291
G Adssl1 adenylosuccinate synthase like 1 JBrowse link 6 137,184,818 137,206,694 RGD:1624291
G Prps1 phosphoribosyl pyrophosphate synthetase 1 JBrowse link X 111,798,233 111,820,270 RGD:5134985
G Prps2 phosphoribosyl pyrophosphate synthetase 2 JBrowse link X 28,435,275 28,472,882 RGD:5134985
AMP phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak3 adenylate kinase 3 JBrowse link 1 247,144,486 247,169,690 RGD:2301093
G Ak9 adenylate kinase 9 JBrowse link 20 46,044,901 46,162,015 RGD:1624291
RGD:13792537
AMP salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adk adenosine kinase JBrowse link 15 3,033,535 3,435,888 RGD:1600115
G Aprt adenine phosphoribosyl transferase JBrowse link 19 55,387,288 55,389,256 RGD:1600115
RGD:13792537
ATP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldoa aldolase, fructose-bisphosphate A JBrowse link 1 198,228,387 198,233,988 RGD:1624291
G Atp5f1a ATP synthase F1 subunit alpha JBrowse link 18 74,156,553 74,164,490 RGD:1624291
G Atp5f1b ATP synthase F1 subunit beta JBrowse link 7 2,504,708 2,511,748 RGD:1624291
G Atp5f1c ATP synthase F1 subunit gamma JBrowse link 17 72,209,321 72,231,562 RGD:13792537
G Atp5f1d ATP synthase F1 subunit delta JBrowse link 7 12,426,807 12,432,120 RGD:724594
G Atp5mc1 ATP synthase membrane subunit c locus 1 JBrowse link 10 83,895,941 83,898,640 RGD:13800744
G Atp5po ATP synthase peripheral stalk subunit OSCP JBrowse link 11 32,081,606 32,087,918 RGD:14696824
G Dguok deoxyguanosine kinase JBrowse link 4 115,180,433 115,208,061 RGD:15039296
G Dmac2l distal membrane arm assembly complex 2 like JBrowse link 6 92,057,782 92,076,022 RGD:1600115
G Ldhc lactate dehydrogenase C JBrowse link 1 102,914,875 102,931,843 RGD:1624291
RGD:1600115
G LOC686324 similar to Protein UNQ655/PRO1286 homolog precursor RGD:1600115
G Pklr pyruvate kinase L/R JBrowse link 2 188,449,158 188,458,034 RGD:2302789
RGD:2302790
G Pkm pyruvate kinase M1/2 JBrowse link 8 64,480,963 64,502,957 RGD:2302790
G Slc25a13 solute carrier family 25 member 13 JBrowse link 4 31,134,165 31,757,006 RGD:1624291
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:1624291
RGD:1600115
G Uqcc3 ubiquinol-cytochrome c reductase complex assembly factor 3 JBrowse link 1 225,076,301 225,077,079 RGD:1600115
ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07064224.1 RGD:1600115
G AC105515.1 RGD:1600115
G Atp5f1a ATP synthase F1 subunit alpha JBrowse link 18 74,156,553 74,164,490 RGD:1600115
RGD:13792537
G Atp5f1c ATP synthase F1 subunit gamma JBrowse link 17 72,209,321 72,231,562 RGD:1600115
RGD:13792537
G Atp5f1d ATP synthase F1 subunit delta JBrowse link 7 12,426,807 12,432,120 RGD:724594
RGD:13792537
RGD:1600115
G Atp5mc1 ATP synthase membrane subunit c locus 1 JBrowse link 10 83,895,941 83,898,640 RGD:13792537
G Atp5mc2 ATP synthase membrane subunit c locus 2 JBrowse link 7 144,264,207 144,272,578 RGD:1600115
RGD:13792537
G Atp5mc3 ATP synthase membrane subunit c locus 3 JBrowse link 3 60,811,218 60,813,903 RGD:1600115
RGD:13792537
G Atp5mg ATP synthase membrane subunit g JBrowse link 8 49,220,441 49,227,273 RGD:13792537
G Atp5pb ATP synthase peripheral stalk-membrane subunit b JBrowse link 2 208,566,385 208,577,147 RGD:13792537
G Atp5pd ATP synthase peripheral stalk subunit d JBrowse link 10 103,967,340 103,972,552 RGD:13792537
G LOC100911417 ATP synthase subunit b, mitochondrial-like JBrowse link 2 208,408,890 208,420,159 RGD:13792537
G LOC500350 LRRGT00139 JBrowse link 4 170,347,410 170,382,370 RGD:13792537
G Mt-atp6 mitochondrially encoded ATP synthase membrane subunit 6 JBrowse link MT 7,919 8,599 RGD:13792537
G Taf3 TATA-box binding protein associated factor 3 JBrowse link 17 72,240,785 72,393,448 RGD:1600115
cAMP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adcy1 adenylate cyclase 1 JBrowse link 14 87,311,970 87,429,880 RGD:2312640
RGD:13792537
G Adcy10 adenylate cyclase 10 JBrowse link 13 83,701,952 83,787,010 RGD:1299450
RGD:1624291
RGD:2313177
RGD:2313173
RGD:2313171
G Adcy2 adenylate cyclase 2 JBrowse link 1 37,043,071 37,698,390 RGD:2312641
RGD:10400857
RGD:1600115
RGD:8553431
RGD:2312674
G Adcy3 adenylate cyclase 3 JBrowse link 6 28,570,941 28,648,848 RGD:2312674
RGD:13792537
RGD:1624291
RGD:1600115
RGD:10400870
G Adcy4 adenylate cyclase 4 JBrowse link 15 34,453,917 34,469,779 RGD:2312641
RGD:1600115
RGD:8554340
RGD:2312674
G Adcy5 adenylate cyclase 5 JBrowse link 11 68,695,839 68,842,452 RGD:2312641
RGD:13792537
RGD:1624291
RGD:1600115
RGD:2315006
RGD:2312674
G Adcy6 adenylate cyclase 6 JBrowse link 7 140,270,678 140,291,722 RGD:1598749
RGD:1600115
RGD:13792537
RGD:1624291
RGD:2315006
RGD:2313211
RGD:2312674
RGD:2312678
RGD:2312654
RGD:2312641
G Adcy7 adenylate cyclase 7 JBrowse link 19 19,702,307 19,762,973 RGD:2312674
RGD:1624291
G Adcy8 adenylate cyclase 8 JBrowse link 7 105,353,883 105,593,372 RGD:2312769
RGD:1600115
RGD:13792537
RGD:7241269
RGD:2312785
G Adcy9 adenylate cyclase 9 JBrowse link 10 11,392,698 11,515,406 RGD:2312785
RGD:1624291
cGMP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gucy1a1 guanylate cyclase 1 soluble subunit alpha 1 JBrowse link 2 181,045,694 181,103,321 RGD:1624291
RGD:1600115
G Gucy1a2 guanylate cyclase 1 soluble subunit alpha 2 JBrowse link 8 408,001 899,851 RGD:1600115
G Gucy1b1 guanylate cyclase 1 soluble subunit beta 1 JBrowse link 2 180,976,939 181,026,001 RGD:1624291
G Gucy1b2 guanylate cyclase 1 soluble subunit beta 2 JBrowse link 15 45,479,662 45,550,285 RGD:1600115
G Gucy2c guanylate cyclase 2C JBrowse link 4 170,659,993 170,740,274 RGD:13792537
G Gucy2d guanylate cyclase 2D, retinal JBrowse link 10 55,835,695 55,851,235 RGD:1624291
RGD:13792537
RGD:1600115
G Gucy2e guanylate cyclase 2E JBrowse link 1 163,398,891 163,433,594 RGD:15023466
RGD:13792537
G Gucy2f guanylate cyclase 2F JBrowse link X 113,372,240 113,474,210 RGD:13792537
G Gucy2g guanylate cyclase 2G JBrowse link 1 276,187,243 276,228,574 RGD:13792537
RGD:1600115
G Nppa natriuretic peptide A JBrowse link 5 164,808,407 164,809,716 RGD:1624291
RGD:13792537
G Nppb natriuretic peptide B JBrowse link 5 164,796,176 164,797,538 RGD:1624291
RGD:13792537
G Nppc natriuretic peptide C JBrowse link 9 93,731,436 93,735,636 RGD:1624291
RGD:13792537
G Npr1 natriuretic peptide receptor 1 JBrowse link 2 189,840,403 189,857,032 RGD:1624291
RGD:13792537
G Npr2 natriuretic peptide receptor 2 JBrowse link 5 59,128,186 59,147,321 RGD:1624291
RGD:13792537
coenzyme A biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acat1 acetyl-CoA acetyltransferase 1 JBrowse link 8 58,166,990 58,195,884 RGD:1624291
G Acot7 acyl-CoA thioesterase 7 JBrowse link 5 169,357,582 169,450,215 RGD:1624291
G Ak6 adenylate kinase 6 JBrowse link 2 30,664,407 30,676,464 RGD:1600115
G Coasy Coenzyme A synthase JBrowse link 10 88,992,413 88,996,677 RGD:1624291
RGD:13792537
G Dcakd dephospho-CoA kinase domain containing JBrowse link 10 91,095,601 91,126,733 RGD:13792537
G Pank1 pantothenate kinase 1 JBrowse link 1 253,115,400 253,189,643 RGD:1624291
RGD:13792537
G Pank2 pantothenate kinase 2 JBrowse link 3 123,807,911 123,841,797 RGD:1624291
RGD:13792537
G Pank3 pantothenate kinase 3 JBrowse link 10 20,591,432 20,615,258 RGD:1624291
RGD:13792537
G Pank4 pantothenate kinase 4 JBrowse link 5 172,367,593 172,384,077 RGD:13792537
RGD:1600115
G Ppcdc phosphopantothenoylcysteine decarboxylase JBrowse link 8 62,191,722 62,219,434 RGD:1624291
G Ppcs phosphopantothenoylcysteine synthetase JBrowse link 5 138,466,298 138,470,108 RGD:1624291
fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gcdh glutaryl-CoA dehydrogenase JBrowse link 19 26,000,497 26,006,970 RGD:1598697
RGD:13792537
GDP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Guk1 guanylate kinase 1 JBrowse link 10 45,535,617 45,552,455 RGD:5147877
GMP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gmps guanine monophosphate synthase JBrowse link 2 154,555,967 154,590,662 RGD:1599004
RGD:1624291
RGD:13792537
RGD:1600115
G Impdh1 inosine monophosphate dehydrogenase 1 JBrowse link 4 56,478,383 56,493,987 RGD:1600115
G Impdh2 inosine monophosphate dehydrogenase 2 JBrowse link 8 117,346,983 117,351,619 RGD:1600115
GMP salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hprt1 hypoxanthine phosphoribosyltransferase 1 JBrowse link X 158,196,640 158,228,815 RGD:13792537
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase JBrowse link X 158,623,231 158,655,277 RGD:13792537
GTP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Decr2 2,4-dienoyl-CoA reductase 2 JBrowse link 10 15,451,850 15,460,227 RGD:1600115
G Impdh1 inosine monophosphate dehydrogenase 1 JBrowse link 4 56,478,383 56,493,987 RGD:13792537
G Impdh2 inosine monophosphate dehydrogenase 2 JBrowse link 8 117,346,983 117,351,619 RGD:13792537
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 JBrowse link 10 81,657,152 81,666,542 RGD:1600115
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 JBrowse link 10 81,648,216 81,653,717 RGD:729254
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 JBrowse link 10 14,258,232 14,259,365 RGD:1600115
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 JBrowse link 10 15,461,567 15,465,422 RGD:1600115
G Nme5 NME/NM23 family member 5 JBrowse link 18 27,357,460 27,374,641 RGD:1600115
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 JBrowse link 8 117,920,912 117,928,148 RGD:1600115
G Nme7 NME/NM23 family member 7 JBrowse link 13 82,607,844 82,737,383 RGD:1600115
IMP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ampd1 adenosine monophosphate deaminase 1 JBrowse link 2 205,568,934 205,589,961 RGD:13792537
G Ampd2 adenosine monophosphate deaminase 2 JBrowse link 2 210,861,624 210,874,348 RGD:1624291
RGD:13792537
G Ampd3 adenosine monophosphate deaminase 3 JBrowse link 1 175,585,301 175,630,479 RGD:1624291
RGD:13792537
IMP salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ampd1 adenosine monophosphate deaminase 1 JBrowse link 2 205,568,934 205,589,961 RGD:1600115
G Ampd2 adenosine monophosphate deaminase 2 JBrowse link 2 210,861,624 210,874,348 RGD:1600115
G Ampd3 adenosine monophosphate deaminase 3 JBrowse link 1 175,585,301 175,630,479 RGD:1600115
G Hprt1 hypoxanthine phosphoribosyltransferase 1 JBrowse link X 158,196,640 158,228,815 RGD:1600115
RGD:13792537
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase JBrowse link X 158,623,231 158,655,277 RGD:1600115
RGD:13792537
G Prtfdc1 phosphoribosyl transferase domain containing 1 JBrowse link 17 87,926,242 88,037,040 RGD:1600115
long-chain fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acsl1 acyl-CoA synthetase long-chain family member 1 JBrowse link 16 48,937,456 49,003,898 RGD:2312800
RGD:13792537
G Acsl4 acyl-CoA synthetase long-chain family member 4 JBrowse link X 113,596,247 113,660,024 RGD:2312800
G Acsl5 acyl-CoA synthetase long-chain family member 5 JBrowse link 1 276,240,703 276,290,012 RGD:2312800
RGD:13792537
G Acsl6 acyl-CoA synthetase long-chain family member 6 JBrowse link 10 39,654,771 39,717,592 RGD:2312800
RGD:13792537
G Elovl1 ELOVL fatty acid elongase 1 JBrowse link 5 137,255,868 137,260,486 RGD:1600115
G Elovl3 ELOVL fatty acid elongase 3 JBrowse link 1 265,883,353 265,887,181 RGD:1600115
G Elovl4 ELOVL fatty acid elongase 4 JBrowse link 8 91,310,690 91,338,625 RGD:1600115
G Elovl5 ELOVL fatty acid elongase 5 JBrowse link 8 85,220,941 85,287,449 RGD:1600115
G Elovl6 ELOVL fatty acid elongase 6 JBrowse link 2 234,187,490 234,296,124 RGD:1600115
G Elovl7 ELOVL fatty acid elongase 7 JBrowse link 2 40,373,211 40,386,643 RGD:1600115
G LOC102549542 elongation of very long chain fatty acids protein 6-like JBrowse link 2 234,375,172 234,486,639 RGD:1600115
malonyl-CoA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acaca acetyl-CoA carboxylase alpha JBrowse link 10 71,519,392 71,719,910 RGD:1600115
G Acacb acetyl-CoA carboxylase beta JBrowse link 12 48,127,149 48,238,969 RGD:1624291
mitochondrial acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mpc1 mitochondrial pyruvate carrier 1 JBrowse link 1 53,026,608 53,038,229 RGD:1624291
G Mpc2 mitochondrial pyruvate carrier 2 JBrowse link 13 83,680,527 83,700,491 RGD:1624291
G Pdha1 pyruvate dehydrogenase E1 subunit alpha 1 JBrowse link X 37,329,779 37,343,410 RGD:1624291
mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC096404.1 RGD:13792537
G Atp5f1a ATP synthase F1 subunit alpha JBrowse link 18 74,156,553 74,164,490 RGD:1624291
G Atp5f1b ATP synthase F1 subunit beta JBrowse link 7 2,504,708 2,511,748 RGD:13792537
RGD:1624291
RGD:1600115
G Atp5f1c ATP synthase F1 subunit gamma JBrowse link 17 72,209,321 72,231,562 RGD:1624291
G Atp5f1d ATP synthase F1 subunit delta JBrowse link 7 12,426,807 12,432,120 RGD:1600115
RGD:1624291
G Atp5f1e ATP synthase F1 subunit epsilon JBrowse link 3 172,563,105 172,566,007 RGD:1624291
G Atp5me ATP synthase membrane subunit e JBrowse link 14 2,325,308 2,326,436 RGD:1624291
G Atp5mf ATP synthase membrane subunit f JBrowse link 12 11,191,799 11,198,369 RGD:1624291
G Atp5mg ATP synthase membrane subunit g JBrowse link 8 49,220,441 49,227,273 RGD:1624291
G Atp5pb ATP synthase peripheral stalk-membrane subunit b JBrowse link 2 208,566,385 208,577,147 RGD:1624291
G Atp5pd ATP synthase peripheral stalk subunit d JBrowse link 10 103,967,340 103,972,552 RGD:1624291
G Atp5pf ATP synthase peripheral stalk subunit F6 JBrowse link 11 24,286,806 24,294,419 RGD:1624291
G Atp5po ATP synthase peripheral stalk subunit OSCP JBrowse link 11 32,081,606 32,087,918 RGD:1624291
G Cox5b cytochrome c oxidase subunit 5B JBrowse link 9 43,259,706 43,262,039 RGD:13792537
G Cyc1 cytochrome c-1 JBrowse link 7 117,409,576 117,411,953 RGD:13792537
G Mt-atp6 mitochondrially encoded ATP synthase membrane subunit 6 JBrowse link MT 7,919 8,599 RGD:1624291
G Mt-atp8 mitochondrially encoded ATP synthase membrane subunit 8 JBrowse link MT 7,758 7,961 RGD:1624291
G Stoml2 stomatin like 2 JBrowse link 5 58,472,561 58,476,158 RGD:1624291
RGD:1600115
negative regulation of ATP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 JBrowse link 1 259,692,020 259,818,922 RGD:9685453
G Flcn folliculin JBrowse link 10 46,153,185 46,172,331 RGD:1624291
RGD:1600115
G Parp1 poly (ADP-ribose) polymerase 1 JBrowse link 13 98,857,255 98,889,444 RGD:1624291
G Pid1 phosphotyrosine interaction domain containing 1 JBrowse link 9 91,667,748 91,683,468 RGD:1624291
positive regulation of ATP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2l1 Bcl2-like 1 JBrowse link 3 148,259,594 148,314,191 RGD:12793033
G Eno1 enolase 1 JBrowse link 5 167,288,223 167,299,610 RGD:1624291
G Il4 interleukin 4 JBrowse link 10 38,963,979 38,969,531 RGD:1624291
G Map2k1 mitogen activated protein kinase kinase 1 JBrowse link 8 69,134,218 69,722,573 RGD:12793039
G Mt-co2 mitochondrially encoded cytochrome c oxidase II JBrowse link MT 7,006 7,689 RGD:13506652
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:7240532
G Ndufc2 NADH:ubiquinone oxidoreductase subunit C2 JBrowse link 1 162,369,801 162,376,024 RGD:11040458
G Pid1 phosphotyrosine interaction domain containing 1 JBrowse link 9 91,667,748 91,683,468 RGD:1624291
G Ppargc1a PPARG coactivator 1 alpha JBrowse link 14 63,095,291 63,190,688 RGD:1624291
RGD:1600115
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:10413842
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:1624291
G Slc25a12 solute carrier family 25 member 12 JBrowse link 3 57,881,951 57,998,214 RGD:13628741
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:8694322
G Taz tafazzin JBrowse link X 156,421,006 156,429,461 RGD:13432160
G Tmsb4x thymosin beta 4, X-linked JBrowse link X 28,593,405 28,617,267 RGD:1624291
G Trem2 triggering receptor expressed on myeloid cells 2 JBrowse link 9 14,611,541 14,618,076 RGD:1624291
G Vcp valosin-containing protein JBrowse link 5 58,426,548 58,445,953 RGD:1624291
propionyl-CoA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acat1 acetyl-CoA acetyltransferase 1 JBrowse link 8 58,166,990 58,195,884 RGD:1624291
regulation of acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pdk1 pyruvate dehydrogenase kinase 1 JBrowse link 3 58,530,870 58,561,494 RGD:1600115
RGD:1624291
G Pdk2 pyruvate dehydrogenase kinase 2 JBrowse link 10 82,838,270 82,852,758 RGD:1600115
RGD:1624291
G Pdk3 pyruvate dehydrogenase kinase 3 JBrowse link X 62,836,131 62,904,114 RGD:1624291
G Pdk4 pyruvate dehydrogenase kinase 4 JBrowse link 4 30,546,772 30,556,774 RGD:1600115
RGD:1624291
regulation of acyl-CoA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Snca synuclein alpha JBrowse link 4 90,782,412 90,883,236 RGD:1624291
regulation of ATP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak4 adenylate kinase 4 JBrowse link 5 120,250,318 120,309,153 RGD:1624291
RGD:1600115
G Sphk2 sphingosine kinase 2 JBrowse link 1 101,692,972 101,700,604 RGD:1624291
regulation of mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atpsckmt ATP synthase c subunit lysine N-methyltransferase JBrowse link 2 84,678,892 84,694,152 RGD:1600115
RGD:1624291
G Dnajc30 DnaJ heat shock protein family (Hsp40) member C30 JBrowse link 12 24,668,398 24,669,464 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19576
    metabolic process 11899
      organic substance metabolic process 11297
        organic substance biosynthetic process 5872
          carbohydrate derivative biosynthetic process 582
            ribose phosphate biosynthetic process 186
              ribonucleotide biosynthetic process 178
                purine ribonucleotide biosynthetic process 165
                  2'-(5''-triphosphoribosyl)-3'-dephospho-CoA biosynthetic process 0
                  3',5'-cyclic diguanylic acid metabolic process 0
                  3'-phosphoadenosine 5'-phosphosulfate biosynthetic process 2
                  ADP biosynthetic process 4
                  AMP biosynthetic process + 7
                  ATP biosynthetic process + 62
                  GDP biosynthetic process 1
                  GMP biosynthetic process + 5
                  GTP biosynthetic process 10
                  IDP biosynthetic process 0
                  IMP biosynthetic process + 14
                  ITP biosynthetic process 0
                  XMP biosynthetic process + 0
                  acyl-CoA biosynthetic process + 34
                  cAMP biosynthetic process 10
                  cGMP biosynthetic process 14
                  coenzyme A biosynthetic process + 11
                  guanosine pentaphosphate biosynthetic process 0
                  guanosine tetraphosphate biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 19576
    metabolic process 11899
      cellular metabolic process 10737
        cellular aromatic compound metabolic process 5503
          nucleobase-containing compound metabolic process 5276
            nucleobase-containing small molecule metabolic process 582
              nucleoside phosphate metabolic process 503
                nucleotide metabolic process 496
                  purine nucleotide metabolic process 414
                    purine nucleotide biosynthetic process 186
                      purine ribonucleotide biosynthetic process 165
                        2'-(5''-triphosphoribosyl)-3'-dephospho-CoA biosynthetic process 0
                        3',5'-cyclic diguanylic acid metabolic process 0
                        3'-phosphoadenosine 5'-phosphosulfate biosynthetic process 2
                        ADP biosynthetic process 4
                        AMP biosynthetic process + 7
                        ATP biosynthetic process + 62
                        GDP biosynthetic process 1
                        GMP biosynthetic process + 5
                        GTP biosynthetic process 10
                        IDP biosynthetic process 0
                        IMP biosynthetic process + 14
                        ITP biosynthetic process 0
                        XMP biosynthetic process + 0
                        acyl-CoA biosynthetic process + 34
                        cAMP biosynthetic process 10
                        cGMP biosynthetic process 14
                        coenzyme A biosynthetic process + 11
                        guanosine pentaphosphate biosynthetic process 0
                        guanosine tetraphosphate biosynthetic process 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.