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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleoside catabolic process
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Accession:GO:0009164 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).
Synonyms:exact_synonym: nucleoside breakdown;   nucleoside catabolism;   nucleoside degradation


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adenosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
MGI:MGI:1857117|MGI:MGI:2155977|MGI:MGI:2681791|MGI:MGI:2683027 (MGI:MGI:1095761|PMID:9272950), (MGI:MGI:1861066|PMID:10899903), (MGI:MGI:2151677|PMID:11591798), (MGI:MGI:2155238|PMID:9478961), (MGI:MGI:3525377|PMID:15630442), (MGI:MGI:3531253|PMID:8663040), (MGI:MGI:3619310|PMID:14607964), (MGI:MGI:3640719|PMID:10720488), (MGI:MGI:3664521|PMID:16841096), (MGI:MGI:3794903|PMID:18340377), (MGI:MGI:3808984|PMID:2015347), (MGI:MGI:4835158|PMID:8672487), (MGI:MGI:49990|PMID:1618849), (MGI:MGI:59127|PMID:2387582), (MGI:MGI:72798|PMID:7731963), (MGI:MGI:74163|PMID:7670465), (MGI:MGI:76875|PMID:7592575), (MGI:MGI:83255|PMID:8894685)
(PMID:16670267), (PMID:8894685)
UniProt
RGD
PMID:1618849, PMID:2015347, PMID:2387582, PMID:7592575, PMID:7670465, PMID:7731963, PMID:8663040, PMID:8672487, PMID:8894685, PMID:9272950, PMID:9478961, PMID:10720488, PMID:10899903, PMID:11591798, PMID:14607964, PMID:15630442, PMID:16670267, PMID:16841096, PMID:18340377, PMID:21873635 GO_REF:0000024, MGI:MGI:1095761, MGI:MGI:1861066, MGI:MGI:2151677, MGI:MGI:2155238, MGI:MGI:3525377, MGI:MGI:3531253, MGI:MGI:3619310, MGI:MGI:3640719, MGI:MGI:3664521, MGI:MGI:3794903, MGI:MGI:3808984, MGI:MGI:4835158, MGI:MGI:49990, MGI:MGI:59127, MGI:MGI:72798, MGI:MGI:74163, MGI:MGI:76875, MGI:MGI:83255, RGD:13792537 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
G Adal adenosine deaminase-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:113,091,696...113,109,841
Ensembl chr 3:113,102,090...113,108,654
JBrowse link
cytidine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase ISO (MGI:MGI:2656023|PMID:12692563) RGD PMID:12692563 MGI:MGI:2656023 NCBI chr 4:155,359,909...155,371,104
Ensembl chr 4:155,359,921...155,369,671
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:155,386,367...155,414,034
Ensembl chr 4:155,386,711...155,401,480
JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:14,529,218...14,542,731
Ensembl chr 9:14,529,218...14,542,731
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:121,108,108...121,128,346
Ensembl chr 7:121,109,241...121,128,542
JBrowse link
G Cda cytidine deaminase IDA
IBA
ISO
PMID:21873635
(PMID:9596658)
RGD PMID:9596658, PMID:675715, PMID:21873635 RGD:2316616, RGD:13792537 NCBI chr 5:156,703,579...156,734,541
Ensembl chr 5:156,703,579...156,734,541
JBrowse link
G Cdadc1 cytidine and dCMP deaminase domain containing 1 ISO (PMID:26945630) RGD PMID:26945630 NCBI chr15:39,865,094...39,894,122
Ensembl chr15:39,882,210...39,893,979
JBrowse link
G LOC100909857 cytidine deaminase-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:156,756,678...156,781,306
Ensembl chr 5:156,757,044...156,781,291
JBrowse link
deoxyadenosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO MGI:MGI:1857117|MGI:MGI:2155977|MGI:MGI:2683027 (MGI:MGI:1095761|PMID:9272950), (MGI:MGI:2155238|PMID:9478961), (MGI:MGI:3619310|PMID:14607964), (MGI:MGI:3640719|PMID:10720488), (MGI:MGI:72798|PMID:7731963), (MGI:MGI:74163|PMID:7670465), (MGI:MGI:76875|PMID:7592575) RGD PMID:7592575, PMID:7670465, PMID:7731963, PMID:9272950, PMID:9478961, PMID:10720488, PMID:14607964 MGI:MGI:1095761, MGI:MGI:2155238, MGI:MGI:3619310, MGI:MGI:3640719, MGI:MGI:72798, MGI:MGI:74163, MGI:MGI:76875 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
deoxyribonucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dera deoxyribose-phosphate aldolase ISO (PMID:9226884) RGD PMID:9226884 NCBI chr 4:171,748,254...171,826,414
Ensembl chr 4:171,748,273...171,826,409
JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 ISO
ISS
(PMID:22556419)
GO_REF:0000024
RGD
UniProt
PMID:22556419 GO_REF:0000024 NCBI chr15:52,265,557...52,268,081
Ensembl chr15:52,265,557...52,268,079
JBrowse link
GMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hprt1 hypoxanthine phosphoribosyltransferase 1 ISO
ISS
(PMID:19527031)
GO_REF:0000024
RGD
UniProt
PMID:19527031 GO_REF:0000024 NCBI chr  X:158,196,640...158,228,815
Ensembl chr  X:158,197,149...158,228,749
JBrowse link
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:158,623,231...158,655,277
Ensembl chr  X:158,623,240...158,655,198
JBrowse link
G Prtfdc1 phosphoribosyl transferase domain containing 1 NOT ISO (PMID:21054786) RGD PMID:21054786 NCBI chr17:87,926,242...88,037,040
Ensembl chr17:87,927,058...88,037,040
JBrowse link
inosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnp purine nucleoside phosphorylase ISO (PMID:16964310) RGD PMID:16964310 NCBI chr15:27,875,883...27,883,566
Ensembl chr15:27,875,911...27,883,350
JBrowse link
nicotinamide riboside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtap methylthioadenosine phosphorylase NOT ISO (PMID:19001417) RGD PMID:19001417 NCBI chr 5:107,711,077...107,777,530
Ensembl chr 5:107,711,077...107,777,530
JBrowse link
G Pnp purine nucleoside phosphorylase ISO (PMID:19001417) RGD PMID:19001417 NCBI chr15:27,875,883...27,883,566
Ensembl chr15:27,875,911...27,883,350
JBrowse link
purine ribonucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp4 ectonucleotide pyrophosphatase/phosphodiesterase 4 ISO (PMID:22995898) RGD PMID:22995898 NCBI chr 9:19,446,807...19,457,946
Ensembl chr 9:19,448,269...19,457,946
JBrowse link
pyrimidine nucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upb1 beta-ureidopropionase 1 ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:22525402)
UniProt
Ensembl
RGD
PMID:22525402 GO_REF:0000024, GO_REF:0000107 NCBI chr20:14,167,383...14,193,724
Ensembl chr20:14,167,586...14,193,690
JBrowse link
S-adenosylhomocysteine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcy adenosylhomocysteinase IDA
ISO
(MGI:MGI:2183618|PMID:12023972) RGD PMID:12023972, PMID:11741948 MGI:MGI:2183618, RGD:730275 NCBI chr 3:150,587,833...150,603,057
Ensembl chr 3:150,587,833...150,603,082
JBrowse link
thymidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase ISO
IEA
ISS
(PMID:1512248)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:1512248 GO_REF:0000024, GO_REF:0000107 NCBI chr 2:221,823,692...222,694,627
Ensembl chr 2:221,823,687...222,694,627
JBrowse link
uridine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upp1 uridine phosphorylase 1 ISO (PMID:7488099)
(MGI:MGI:5476603|PMID:23355744), (MGI:MGI:73237|PMID:7744869)
RGD PMID:7488099, PMID:7744869, PMID:23355744 MGI:MGI:5476603, MGI:MGI:73237 NCBI chr14:89,314,234...89,334,060
Ensembl chr14:89,314,176...89,334,276
JBrowse link
G Upp2 uridine phosphorylase 2 ISO (PMID:12849978), (PMID:21855639)
(MGI:MGI:2683856|PMID:14715930)
RGD PMID:12849978, PMID:14715930, PMID:21855639 MGI:MGI:2683856 NCBI chr 3:44,806,106...44,846,464
Ensembl chr 3:44,806,106...44,846,464
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      nitrogen compound metabolic process 10342
        organonitrogen compound metabolic process 7132
          organonitrogen compound catabolic process 1306
            nucleoside catabolic process 22
              deoxyribonucleoside catabolic process + 3
              purine nucleoside catabolic process + 9
              pyridine nucleoside catabolic process + 2
              pyrimidine nucleoside catabolic process + 11
              ribonucleoside catabolic process + 18
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      cellular metabolic process 11065
        cellular aromatic compound metabolic process 5708
          nucleobase-containing compound metabolic process 5483
            nucleobase-containing small molecule metabolic process 590
              nucleoside metabolic process 93
                nucleoside catabolic process 22
                  deoxyribonucleoside catabolic process + 3
                  purine nucleoside catabolic process + 9
                  pyridine nucleoside catabolic process + 2
                  pyrimidine nucleoside catabolic process + 11
                  ribonucleoside catabolic process + 18
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.