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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleotide-sugar metabolic process
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Accession:GO:0009225 term browser browse the term
Definition:The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
Comment:Added parent as requested here https://github.com/geneontology/go-ontology/issues/14587
Synonyms:exact_synonym: nucleotide-sugar metabolism


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nucleotide-sugar metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Parg poly (ADP-ribose) glycohydrolase JBrowse link 16 8,350,168 8,457,999 RGD:13792537
G Tgds TDP-glucose 4,6-dehydratase JBrowse link 15 103,319,268 103,340,239 RGD:1600115
'de novo' GDP-L-fucose biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gmds GDP-mannose 4, 6-dehydratase JBrowse link 17 33,408,722 33,938,086 RGD:1624291
RGD:13792537
RGD:1600115
G Tsta3 tissue specific transplantation antigen P35B JBrowse link 7 116,958,427 116,963,281 RGD:1624291
CMP-N-acetylneuraminate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmahp cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene JBrowse link 17 42,567,472 42,640,221 RGD:1624291
GDP-L-fucose metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fut8 fucosyltransferase 8 JBrowse link 6 100,305,957 100,537,208 RGD:1600115
RGD:1624291
GDP-L-fucose salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fcsk fucose kinase JBrowse link 19 43,338,146 43,357,826 RGD:13792537
RGD:1624291
GDP-mannose biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gmppb GDP-mannose pyrophosphorylase B JBrowse link 8 116,826,251 116,856,159 RGD:1624291
G Mpi mannose phosphate isomerase JBrowse link 8 62,324,176 62,332,080 RGD:1600115
RGD:13792537
RGD:1624291
G Pmm1 phosphomannomutase 1 JBrowse link 7 123,183,504 123,193,874 RGD:1600115
G Pmm2 phosphomannomutase 2 JBrowse link 10 7,056,258 7,077,443 RGD:1600115
GDP-mannose metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dpm1 dolichyl-phosphate mannosyltransferase subunit 1, catalytic JBrowse link 3 164,966,637 164,986,180 RGD:1601442
G Gmds GDP-mannose 4, 6-dehydratase JBrowse link 17 33,408,722 33,938,086 RGD:1600115
RGD:13792537
RGD:1624291
G Guk1 guanylate kinase 1 JBrowse link 10 45,535,617 45,552,455 RGD:5147867
G Tsta3 tissue specific transplantation antigen P35B JBrowse link 7 116,958,427 116,963,281 RGD:1624291
UDP-D-xylose biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Uxs1 UDP-glucuronate decarboxylase 1 JBrowse link 9 11,165,006 11,240,329 RGD:1600115
UDP-glucose catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Galt galactose-1-phosphate uridylyltransferase JBrowse link 5 58,144,679 58,147,946 RGD:1598677
UDP-glucose metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Galt galactose-1-phosphate uridylyltransferase JBrowse link 5 58,144,679 58,147,946 RGD:1624291
G Ugp2 UDP-glucose pyrophosphorylase 2 JBrowse link 14 106,208,174 106,249,322 RGD:2303737
RGD:13792537
RGD:2303740
UDP-glucosylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Uggt1 UDP-glucose glycoprotein glucosyltransferase 1 JBrowse link 9 42,692,156 42,805,680 RGD:1600115
UDP-glucuronate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ugdh UDP-glucose 6-dehydrogenase JBrowse link 14 44,479,614 44,502,845 RGD:1600115
RGD:1624291
UDP-glucuronate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 JBrowse link 16 22,704,318 23,075,071 RGD:1624291
UDP-N-acetylgalactosamine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G B4galnt2 beta-1,4-N-acetyl-galactosaminyl transferase 2 JBrowse link 10 83,677,768 83,701,487 RGD:1624291
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 JBrowse link 16 22,704,318 23,075,071 RGD:1624291
G Extl2 exostosin-like glycosyltransferase 2 JBrowse link 2 218,951,112 218,972,576 RGD:1624291
UDP-N-acetylglucosamine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 JBrowse link 4 118,852,046 118,901,583 RGD:1600115
G Gfpt2 glutamine-fructose-6-phosphate transaminase 2 JBrowse link 10 35,279,237 35,325,506 RGD:1600115
G Gnpda1 glucosamine-6-phosphate deaminase 1 JBrowse link 18 31,479,117 31,489,154 RGD:13792537
G Gnpda2 glucosamine-6-phosphate deaminase 2 JBrowse link 14 62,628,102 62,646,158 RGD:13792537
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 JBrowse link 15 19,721,292 19,734,032 RGD:13792537
RGD:1600115
G Pgm3 phosphoglucomutase 3 JBrowse link 8 94,225,513 94,243,230 RGD:1624291
RGD:13792537
RGD:1600115
G Uap1 UDP-N-acetylglucosamine pyrophosphorylase 1 JBrowse link 13 88,463,532 88,497,901 RGD:13792537
G Uap1l1 UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 JBrowse link 3 2,579,250 2,584,523 RGD:13792537
UDP-N-acetylglucosamine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mgat1 alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase JBrowse link 10 34,518,392 34,537,214 RGD:1624291
UDP-N-acetylglucosamine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G B4galnt2 beta-1,4-N-acetyl-galactosaminyl transferase 2 JBrowse link 10 83,677,768 83,701,487 RGD:1624291
G Dpagt1 dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 JBrowse link 8 48,657,779 48,664,531 RGD:1624315
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 JBrowse link 4 118,852,046 118,901,583 RGD:1625426
RGD:13792537
G Gfpt2 glutamine-fructose-6-phosphate transaminase 2 JBrowse link 10 35,279,237 35,325,506 RGD:13792537
G Gne glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase JBrowse link 5 59,511,738 59,553,421 RGD:1600115
G Uap1 UDP-N-acetylglucosamine pyrophosphorylase 1 JBrowse link 13 88,463,532 88,497,901 RGD:1625549

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19336
    metabolic process 11555
      small molecule metabolic process 1773
        nucleobase-containing small molecule metabolic process 575
          nucleotide-sugar metabolic process 32
            ADP-L-glycero-beta-D-manno-heptose metabolic process + 0
            CMP-N-acetylneuraminate metabolic process + 1
            CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process + 0
            GDP-D-rhamnose metabolic process + 0
            GDP-L-fucose metabolic process + 4
            GDP-L-galactose metabolic process + 0
            GDP-mannose metabolic process + 8
            UDP-4-deoxy-4-formamido-beta-L-arabinopyranose metabolic process + 0
            UDP-D-apiose metabolic process + 0
            UDP-D-galactose metabolic process + 0
            UDP-D-galacturonate metabolic process + 0
            UDP-D-xylose metabolic process + 1
            UDP-L-arabinose metabolic process + 0
            UDP-N-acetylgalactosamine metabolic process + 3
            UDP-N-acetylglucosamine metabolic process + 12
            UDP-glucose metabolic process + 3
            UDP-glucuronate metabolic process + 2
            UDP-rhamnose metabolic process + 0
            dTDP-mannose metabolic process + 0
            dTDP-rhamnose metabolic process + 0
            nucleotide-sugar biosynthetic process + 17
            nucleotide-sugar catabolic process + 2
Path 2
Term Annotations click to browse term
  biological_process 19336
    metabolic process 11555
      cellular metabolic process 10567
        cellular aromatic compound metabolic process 5482
          nucleobase-containing compound metabolic process 5256
            nucleobase-containing small molecule metabolic process 575
              nucleotide-sugar metabolic process 32
                ADP-L-glycero-beta-D-manno-heptose metabolic process + 0
                CMP-N-acetylneuraminate metabolic process + 1
                CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process + 0
                GDP-D-rhamnose metabolic process + 0
                GDP-L-fucose metabolic process + 4
                GDP-L-galactose metabolic process + 0
                GDP-mannose metabolic process + 8
                UDP-4-deoxy-4-formamido-beta-L-arabinopyranose metabolic process + 0
                UDP-D-apiose metabolic process + 0
                UDP-D-galactose metabolic process + 0
                UDP-D-galacturonate metabolic process + 0
                UDP-D-xylose metabolic process + 1
                UDP-L-arabinose metabolic process + 0
                UDP-N-acetylgalactosamine metabolic process + 3
                UDP-N-acetylglucosamine metabolic process + 12
                UDP-glucose metabolic process + 3
                UDP-glucuronate metabolic process + 2
                UDP-rhamnose metabolic process + 0
                dTDP-mannose metabolic process + 0
                dTDP-rhamnose metabolic process + 0
                nucleotide-sugar biosynthetic process + 17
                nucleotide-sugar catabolic process + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.