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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleotide-sugar biosynthetic process
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Accession:GO:0009226 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
Synonyms:exact_synonym: nucleotide-sugar anabolism;   nucleotide-sugar biosynthesis;   nucleotide-sugar formation;   nucleotide-sugar synthesis


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'de novo' GDP-L-fucose biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gmds GDP-mannose 4, 6-dehydratase JBrowse link 17 33,408,722 33,938,086 RGD:1624291
RGD:13792537
RGD:1600115
G Tsta3 tissue specific transplantation antigen P35B JBrowse link 7 116,958,427 116,963,281 RGD:1624291
GDP-L-fucose salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fcsk fucose kinase JBrowse link 19 43,338,146 43,357,826 RGD:13792537
RGD:1624291
GDP-mannose biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gmppb GDP-mannose pyrophosphorylase B JBrowse link 8 116,826,251 116,856,159 RGD:1624291
G Mpi mannose phosphate isomerase JBrowse link 8 62,324,176 62,332,080 RGD:1600115
RGD:13792537
RGD:1624291
G Pmm1 phosphomannomutase 1 JBrowse link 7 123,183,504 123,193,874 RGD:1600115
G Pmm2 phosphomannomutase 2 JBrowse link 10 7,056,258 7,077,443 RGD:1600115
UDP-D-xylose biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Uxs1 UDP-glucuronate decarboxylase 1 JBrowse link 9 11,165,006 11,240,329 RGD:1600115
UDP-glucuronate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ugdh UDP-glucose 6-dehydrogenase JBrowse link 14 44,479,614 44,502,845 RGD:1600115
RGD:1624291
UDP-N-acetylglucosamine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 JBrowse link 4 118,852,046 118,901,583 RGD:1600115
G Gfpt2 glutamine-fructose-6-phosphate transaminase 2 JBrowse link 10 35,279,237 35,325,506 RGD:1600115
G Gnpda1 glucosamine-6-phosphate deaminase 1 JBrowse link 18 31,479,117 31,489,154 RGD:13792537
G Gnpda2 glucosamine-6-phosphate deaminase 2 JBrowse link 14 62,628,102 62,646,158 RGD:13792537
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 JBrowse link 15 19,721,292 19,734,032 RGD:1600115
RGD:13792537
G Pgm3 phosphoglucomutase 3 JBrowse link 8 94,225,513 94,243,230 RGD:1624291
RGD:13792537
RGD:1600115
G Uap1 UDP-N-acetylglucosamine pyrophosphorylase 1 JBrowse link 13 88,463,532 88,497,901 RGD:13792537
G Uap1l1 UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 JBrowse link 3 2,579,250 2,584,523 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19439
    metabolic process 11638
      small molecule metabolic process 1788
        nucleobase-containing small molecule metabolic process 577
          nucleotide-sugar metabolic process 32
            nucleotide-sugar biosynthetic process 17
              ADP-L-glycero-beta-D-manno-heptose biosynthetic process 0
              CMP-N-acetylneuraminate biosynthetic process 0
              CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 0
              GDP-D-rhamnose biosynthetic process 0
              GDP-L-fucose biosynthetic process + 3
              GDP-L-galactose biosynthetic process 0
              GDP-mannose biosynthetic process + 4
              UDP-4-deoxy-4-formamido-beta-L-arabinopyranose biosynthetic process 0
              UDP-D-apiose biosynthetic process 0
              UDP-D-galacturonate biosynthetic process 0
              UDP-D-xylose biosynthetic process 1
              UDP-L-arabinose biosynthetic process 0
              UDP-N-acetylgalactosamine biosynthetic process 0
              UDP-N-acetylglucosamine biosynthetic process + 8
              UDP-galactose biosynthetic process 0
              UDP-glucuronate biosynthetic process 1
              UDP-rhamnose biosynthetic process 0
              dTDP-mannose biosynthetic process 0
              dTDP-rhamnose biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 19439
    metabolic process 11638
      organic substance metabolic process 11027
        organic cyclic compound metabolic process 5711
          nucleobase-containing compound metabolic process 5274
            nucleobase-containing small molecule metabolic process 577
              nucleotide-sugar metabolic process 32
                nucleotide-sugar biosynthetic process 17
                  ADP-L-glycero-beta-D-manno-heptose biosynthetic process 0
                  CMP-N-acetylneuraminate biosynthetic process 0
                  CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 0
                  GDP-D-rhamnose biosynthetic process 0
                  GDP-L-fucose biosynthetic process + 3
                  GDP-L-galactose biosynthetic process 0
                  GDP-mannose biosynthetic process + 4
                  UDP-4-deoxy-4-formamido-beta-L-arabinopyranose biosynthetic process 0
                  UDP-D-apiose biosynthetic process 0
                  UDP-D-galacturonate biosynthetic process 0
                  UDP-D-xylose biosynthetic process 1
                  UDP-L-arabinose biosynthetic process 0
                  UDP-N-acetylgalactosamine biosynthetic process 0
                  UDP-N-acetylglucosamine biosynthetic process + 8
                  UDP-galactose biosynthetic process 0
                  UDP-glucuronate biosynthetic process 1
                  UDP-rhamnose biosynthetic process 0
                  dTDP-mannose biosynthetic process 0
                  dTDP-rhamnose biosynthetic process 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.