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ONTOLOGY REPORT - ANNOTATIONS


Term:isopentenyl diphosphate biosynthetic process
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Accession:GO:0009240 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids.
Synonyms:exact_synonym: IPP biosynthesis;   IPP biosynthetic process;   isopentenyl diphosphate anabolism;   isopentenyl diphosphate biosynthesis;   isopentenyl diphosphate formation;   isopentenyl diphosphate synthesis;   isopentenyl pyrophosphate biosynthesis;   isopentenyl pyrophosphate biosynthetic process


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isopentenyl diphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07028157.1 RGD:13792537
G Idi1 isopentenyl-diphosphate delta isomerase 1 JBrowse link 17 57,976,266 57,984,036 RGD:13792537
G LOC102551575 isopentenyl-diphosphate delta-isomerase 2-like JBrowse link 17 57,864,652 57,866,201 RGD:13792537
G LOC291276 similar to isopentenyl diphosphate delta-isomerase type 2 JBrowse link 17 57,701,861 57,705,698 RGD:13792537
G RGD1564347 similar to isopentenyl diphosphate delta-isomerase type 2 JBrowse link 17 57,674,146 57,688,350 RGD:13792537
isopentenyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mvd mevalonate diphosphate decarboxylase JBrowse link 19 55,258,910 55,268,933 RGD:2316852
RGD:13792537
RGD:1600115
G Mvk mevalonate kinase JBrowse link 12 47,904,266 47,920,457 RGD:2316852
RGD:13792537
RGD:1600115
G Pmvk phosphomevalonate kinase JBrowse link 2 188,784,329 188,793,890 RGD:2316852
RGD:1600115
RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19578
    metabolic process 11901
      biosynthetic process 5967
        cellular biosynthetic process 5791
          phospholipid biosynthetic process 173
            isopentenyl diphosphate biosynthetic process 8
              isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway + 0
              isopentenyl diphosphate biosynthetic process, mevalonate pathway + 3
Path 2
Term Annotations click to browse term
  biological_process 19578
    metabolic process 11901
      primary metabolic process 10563
        lipid metabolic process 1343
          cellular lipid metabolic process 1025
            isoprenoid metabolic process 114
              isoprenoid biosynthetic process 39
                isopentenyl diphosphate biosynthetic process 8
                  isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway + 0
                  isopentenyl diphosphate biosynthetic process, mevalonate pathway + 3
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.