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ONTOLOGY REPORT - ANNOTATIONS


Term:ribonucleotide catabolic process
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Accession:GO:0009261 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: ribonucleotide breakdown;   ribonucleotide catabolism;   ribonucleotide degradation


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acetyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 ISO (PMID:17371050) RGD PMID:17371050 NCBI chr 8:58,166,990...58,195,884
Ensembl chr 8:58,166,990...58,195,884
JBrowse link
G Nudt7 nudix hydrolase 7 ISO (MGI:MGI:2137102|PMID:11415433), (MGI:MGI:6450264|PMID:18799520) RGD PMID:11415433, PMID:18799520 MGI:MGI:2137102, MGI:MGI:6450264 NCBI chr19:46,455,745...46,470,070
Ensembl chr19:46,455,761...46,482,050
JBrowse link
adenosine 5'-(hexahydrogen pentaphosphate) catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt10 nudix (nucleoside diphosphate linked moiety X)-type motif 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:17,540,036...17,541,296
Ensembl chr  X:17,540,458...17,540,952
Ensembl chr  X:17,540,458...17,540,952
JBrowse link
G Nudt11 nudix hydrolase 11 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:17,171,510...17,215,108
Ensembl chr  X:17,540,458...17,540,952
Ensembl chr  X:17,540,458...17,540,952
JBrowse link
G Nudt3 nudix hydrolase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:7,155,744...7,208,292
Ensembl chr20:7,155,748...7,208,292
JBrowse link
G Nudt4 nudix hydrolase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:36,643,916...36,660,334
Ensembl chr 7:36,643,916...36,660,141
JBrowse link
ADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt9 nudix hydrolase 9 ISO (MGI:MGI:2158549|PMID:11825615) RGD PMID:11825615 MGI:MGI:2158549 NCBI chr14:7,036,809...7,054,739
Ensembl chr14:7,036,820...7,054,548
JBrowse link
AMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd3 adenosine monophosphate deaminase 3 TAS RGD PMID:9291127 RGD:632203 NCBI chr 1:175,585,301...175,630,479
Ensembl chr 1:175,586,097...175,630,467
JBrowse link
G Nt5e 5' nucleotidase, ecto IDA
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
MGI:MGI:3522017 (MGI:MGI:3770326|PMID:16547283)
Ensembl
RGD
PMID:16547283, PMID:21414400, PMID:21873635 GO_REF:0000107, MGI:MGI:3770326, RGD:5134346, RGD:13792537 NCBI chr 8:95,969,002...96,012,733
Ensembl chr 8:95,968,652...96,012,696
JBrowse link
butyryl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 ISO (MGI:MGI:6450264|PMID:18799520) RGD PMID:18799520 MGI:MGI:6450264 NCBI chr19:46,455,745...46,470,070
Ensembl chr19:46,455,761...46,482,050
JBrowse link
cAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde10a phosphodiesterase 10A IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:52,360,296...52,544,448
Ensembl chr 1:52,360,296...52,544,450
JBrowse link
G Pde4a phosphodiesterase 4A IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 8:22,189,533...22,234,036
Ensembl chr 8:22,189,600...22,233,748
JBrowse link
G Pde4b phosphodiesterase 4B IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 5:121,759,236...122,136,814
Ensembl chr 5:121,952,977...122,136,814
JBrowse link
G Pde4c phosphodiesterase 4C IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr16:20,442,305...20,466,386
Ensembl chr16:20,442,609...20,460,959
Ensembl chr16:20,442,609...20,460,959
JBrowse link
G Pde4d phosphodiesterase 4D IEA
IBA
ISO
GO_REF:0000041
PMID:21873635
(PMID:20819076)
UniProt
RGD
PMID:20819076, PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr 2:40,219,999...41,468,551
Ensembl chr 2:40,554,146...41,464,264
JBrowse link
G Pde7a phosphodiesterase 7A IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:104,042,124...104,134,101
Ensembl chr 2:104,045,811...104,134,101
JBrowse link
G Pde8a phosphodiesterase 8A IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:143,036,083...143,160,395
Ensembl chr 1:143,036,218...143,159,433
JBrowse link
G Pde8b phosphodiesterase 8B IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:24,718,548...24,955,533
Ensembl chr 2:24,719,976...24,923,128
JBrowse link
cGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde10a phosphodiesterase 10A IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:52,360,296...52,544,448
Ensembl chr 1:52,360,296...52,544,450
JBrowse link
G Pde1a phosphodiesterase 1A IMP RGD PMID:16514069 RGD:2312521 NCBI chr 3:66,803,247...67,263,658
Ensembl chr 3:66,803,247...66,885,094
JBrowse link
G Pde2a phosphodiesterase 2A IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:MGI:4420377|PMID:19632989)
(PMID:19828435)
Ensembl
RGD
PMID:19632989, PMID:19828435, PMID:21873635 GO_REF:0000107, MGI:MGI:4420377, RGD:13792537 NCBI chr 1:166,534,643...166,626,158
Ensembl chr 1:166,534,643...166,626,158
JBrowse link
G Pde5a phosphodiesterase 5A ISO
IEA
(MGI:MGI:2450821|PMID:12554648)
GO_REF:0000107
GO_REF:0000041
RGD
Ensembl
UniProt
PMID:12554648 GO_REF:0000041, GO_REF:0000107, MGI:MGI:2450821 NCBI chr 2:226,899,604...227,044,916
Ensembl chr 2:226,900,619...227,041,576
JBrowse link
G Pde9a phosphodiesterase 9A IEA
IBA
ISO
ISS
GO_REF:0000041
PMID:21873635
(MGI:MGI:1266874|PMID:9624145), (MGI:MGI:5634842|PMID:25799991)
GO_REF:0000024
(PMID:25799991)
UniProt
RGD
PMID:9624145, PMID:25799991, PMID:21873635 GO_REF:0000024, GO_REF:0000041, MGI:MGI:1266874, MGI:MGI:5634842, RGD:13792537 NCBI chr20:10,123,624...10,216,325
Ensembl chr20:10,123,651...10,216,548
JBrowse link
coenzyme A catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 IBA
ISO
PMID:21873635
(MGI:MGI:2137102|PMID:11415433), (MGI:MGI:6450264|PMID:18799520)
RGD PMID:11415433, PMID:18799520, PMID:21873635 MGI:MGI:2137102, MGI:MGI:6450264, RGD:13792537 NCBI chr19:46,455,745...46,470,070
Ensembl chr19:46,455,761...46,482,050
JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 ISO
ISS
(PMID:22556419)
GO_REF:0000024
RGD
UniProt
PMID:22556419 GO_REF:0000024 NCBI chr15:52,265,557...52,268,081
Ensembl chr15:52,265,557...52,268,079
JBrowse link
GMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hprt1 hypoxanthine phosphoribosyltransferase 1 ISO
ISS
(PMID:19527031)
GO_REF:0000024
RGD
UniProt
PMID:19527031 GO_REF:0000024 NCBI chr  X:158,196,640...158,228,815
Ensembl chr  X:158,197,149...158,228,749
JBrowse link
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:158,623,231...158,655,277
Ensembl chr  X:158,623,240...158,655,198
JBrowse link
G Prtfdc1 phosphoribosyl transferase domain containing 1 NOT ISO (PMID:21054786) RGD PMID:21054786 NCBI chr17:87,926,242...88,037,040
Ensembl chr17:87,927,058...88,037,040
JBrowse link
IDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix hydrolase 16 ISO (PMID:20385596) RGD PMID:20385596 NCBI chr 8:113,673,069...113,675,124
Ensembl chr 8:113,672,758...113,675,128
JBrowse link
G Nudt9 nudix hydrolase 9 ISO (MGI:MGI:2158549|PMID:11825615) RGD PMID:11825615 MGI:MGI:2158549 NCBI chr14:7,036,809...7,054,739
Ensembl chr14:7,036,820...7,054,548
JBrowse link
ITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Itpa inosine triphosphatase ISO MGI:MGI:4942407 (MGI:MGI:5009783|PMID:20081199) RGD PMID:20081199 MGI:MGI:5009783 NCBI chr 3:123,209,611...123,221,266
Ensembl chr 3:123,209,608...123,221,269
JBrowse link
long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot7 acyl-CoA thioesterase 7 ISO (PMID:10578051) RGD PMID:10578051 NCBI chr 5:169,357,582...169,450,215
Ensembl chr 5:169,357,517...169,450,219
JBrowse link
malonyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlycd malonyl-CoA decarboxylase ISO
ISS
IBA
(MGI:MGI:5501374|PMID:23746352)
GO_REF:0000024
(PMID:10417274), (PMID:10455107), (PMID:15003260)
PMID:21873635
RGD
UniProt
PMID:10417274, PMID:10455107, PMID:15003260, PMID:23746352, PMID:21873635 GO_REF:0000024, MGI:MGI:5501374, RGD:13792537 NCBI chr19:52,032,950...52,048,773
Ensembl chr19:52,032,886...52,048,753
JBrowse link
medium-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot7 acyl-CoA thioesterase 7 ISO (PMID:10578051) RGD PMID:10578051 NCBI chr 5:169,357,582...169,450,215
Ensembl chr 5:169,357,517...169,450,219
JBrowse link
G Nudt7 nudix hydrolase 7 ISO (MGI:MGI:6450264|PMID:18799520) RGD PMID:18799520 MGI:MGI:6450264 NCBI chr19:46,455,745...46,470,070
Ensembl chr19:46,455,761...46,482,050
JBrowse link
propionyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 ISO (MGI:MGI:6450264|PMID:18799520) RGD PMID:18799520 MGI:MGI:6450264 NCBI chr19:46,455,745...46,470,070
Ensembl chr19:46,455,761...46,482,050
JBrowse link
purine ribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07060778.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:93,405,802...93,406,182 JBrowse link
G Hint1 histidine triad nucleotide binding protein 1 ISO
IBA
ISS
(PMID:16835243)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:16835243, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:40,208,236...40,211,981
Ensembl chr10:40,208,223...40,211,975
JBrowse link
G Hint1-ps1 histidine triad nucleotide binding protein 1, pseudogene 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:93,405,665...93,406,239 JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 ISO (PMID:9556635) RGD PMID:9556635 NCBI chr15:51,222,954...51,250,787
Ensembl chr15:51,222,954...51,250,787
JBrowse link
very long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd1 ATP binding cassette subfamily D member 1 ISO
ISS
(PMID:23671276)
GO_REF:0000024
RGD
UniProt
PMID:23671276 GO_REF:0000024 NCBI chr  X:157,073,860...157,095,652
Ensembl chr  X:157,072,736...157,095,274
JBrowse link
XDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix hydrolase 16 ISO (PMID:20385596) RGD PMID:20385596 NCBI chr 8:113,673,069...113,675,124
Ensembl chr 8:113,672,758...113,675,128
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      catabolic process 2560
        organic substance catabolic process 2109
          carbohydrate derivative catabolic process 144
            ribonucleotide catabolic process 34
              FMN catabolic process 0
              purine ribonucleotide catabolic process + 33
              pyrimidine ribonucleotide catabolic process + 1
Path 2
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      cellular metabolic process 11085
        cellular aromatic compound metabolic process 5715
          nucleobase-containing compound metabolic process 5489
            nucleobase-containing small molecule metabolic process 591
              nucleoside phosphate metabolic process 511
                nucleotide metabolic process 504
                  nucleotide catabolic process 54
                    ribonucleotide catabolic process 34
                      FMN catabolic process 0
                      purine ribonucleotide catabolic process + 33
                      pyrimidine ribonucleotide catabolic process + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.