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ONTOLOGY REPORT - ANNOTATIONS


Term:mRNA transcription
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Accession:GO:0009299 term browser browse the term
Definition:The cellular synthesis of messenger RNA (mRNA) from a DNA template.
Synonyms:exact_synonym: cellular mRNA transcription
 broad_synonym: mRNA biosynthesis;   mRNA biosynthetic process;   mRNA synthesis
 alt_id: GO:0061023


show annotations for term's descendants           Sort by:
 
mRNA transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx5 DEAD-box helicase 5 ISO (PMID:23143267) RGD PMID:23143267 NCBI chr10:94,979,759...94,988,461
Ensembl chr10:94,980,928...94,988,461
JBrowse link
G Eef1d eukaryotic translation elongation factor 1 delta ISO (PMID:21597468) RGD PMID:21597468 NCBI chr 7:116,928,264...116,942,981
Ensembl chr 7:116,928,265...116,936,674
JBrowse link
G Ereg epiregulin ISO
ISS
(PMID:10681561)
GO_REF:0000024
RGD
UniProt
PMID:10681561 GO_REF:0000024 NCBI chr14:18,577,620...18,591,395
Ensembl chr14:18,576,355...18,591,394
JBrowse link
G Hipk3 homeodomain interacting protein kinase 3 IEA
ISO
GO_REF:0000107
(PMID:17210646)
Ensembl
RGD
PMID:17210646 GO_REF:0000107 NCBI chr 3:94,349,778...94,419,185
Ensembl chr 3:94,352,969...94,419,048
JBrowse link
G Hsf1 heat shock transcription factor 1 ISO (PMID:21597468) RGD PMID:21597468 NCBI chr 7:117,538,523...117,565,478
Ensembl chr 7:117,538,523...117,565,478
JBrowse link
G Tp53 tumor protein p53 ISO (PMID:16479015) RGD PMID:16479015 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
mRNA transcription by RNA polymerase II term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 ISO
IEA
(MGI:MGI:6406755|PMID:31272455)
GO_REF:0000107
RGD
Ensembl
PMID:31272455 GO_REF:0000107, MGI:MGI:6406755 NCBI chr 2:24,022,815...24,227,522
Ensembl chr 2:24,024,791...24,226,224
JBrowse link
G Atf4 activating transcription factor 4 ISO
ISS
(MGI:MGI:3582244|PMID:11106749)
GO_REF:0000024
RGD
UniProt
PMID:11106749 GO_REF:0000024, MGI:MGI:3582244 NCBI chr 7:121,480,723...121,482,781
Ensembl chr 7:121,480,723...121,482,772
JBrowse link
G C5ar1 complement C5a receptor 1 ISO
ISS
(PMID:22496247)
GO_REF:0000024
RGD
UniProt
PMID:22496247 GO_REF:0000024 NCBI chr 1:78,186,777...78,195,132
Ensembl chr 1:78,186,776...78,195,328
JBrowse link
G Flna filamin A IMP RGD PMID:20167606 RGD:7207405 NCBI chr  X:156,460,785...156,487,245
Ensembl chr  X:156,463,953...156,487,245
JBrowse link
G Foxe3 forkhead box E3 ISO
ISS
(PMID:27218149)
GO_REF:0000024
RGD
UniProt
PMID:27218149 GO_REF:0000024 NCBI chr 5:133,724,796...133,725,656
Ensembl chr 5:133,724,796...133,725,656
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO (MGI:MGI:5438900|PMID:22633954) RGD PMID:22633954 MGI:MGI:5438900 NCBI chr14:11,256,163...11,274,684
Ensembl chr14:11,256,268...11,274,578
JBrowse link
G Med1 mediator complex subunit 1 ISO
ISS
(MGI:MGI:5297786|PMID:16723356)
GO_REF:0000024
RGD
UniProt
PMID:16723356 GO_REF:0000024, MGI:MGI:5297786 NCBI chr10:86,101,560...86,145,271
Ensembl chr10:86,103,600...86,144,880
JBrowse link
G Sp1 Sp1 transcription factor ISO (MGI:MGI:5426758|PMID:22331133) RGD PMID:22331133 MGI:MGI:5426758 NCBI chr 7:144,014,173...144,044,635
Ensembl chr 7:144,014,173...144,044,629
JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 ISO (MGI:MGI:5426758|PMID:22331133) RGD PMID:22331133 MGI:MGI:5426758 NCBI chr10:46,570,996...46,593,021
Ensembl chr10:46,570,996...46,593,009
JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO (MGI:MGI:5648764|PMID:26026268) RGD PMID:26026268 MGI:MGI:5648764 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:65,470,470...65,507,581
Ensembl chr10:65,470,471...65,507,581
JBrowse link
G Tfcp2 transcription factor CP2 ISO (PMID:11003662) RGD PMID:11003662 NCBI chr 7:142,138,836...142,181,036
Ensembl chr 7:142,138,844...142,180,997
JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 ISO (PMID:21706167) RGD PMID:21706167 NCBI chr 6:99,401,775...99,425,739
Ensembl chr 6:99,402,360...99,424,019
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      cellular metabolic process 11065
        cellular biosynthetic process 6052
          cellular macromolecule biosynthetic process 5074
            transcription, DNA-templated 3419
              mRNA transcription 19
                mRNA transcription by RNA polymerase II + 13
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      cellular metabolic process 11065
        heterocycle metabolic process 5634
          nucleobase-containing compound metabolic process 5483
            nucleic acid metabolic process 4980
              RNA metabolic process 4470
                RNA biosynthetic process 3478
                  nucleic acid-templated transcription 3464
                    transcription, DNA-templated 3419
                      mRNA transcription 19
                        mRNA transcription by RNA polymerase II + 13
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.