Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:amine metabolic process
go back to main search page
Accession:GO:0009308 term browser browse the term
Definition:The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
Synonyms:exact_synonym: amine metabolism


show annotations for term's descendants           Sort by:
 
amine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AOC1 amine oxidase copper containing 1 IEA
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr 7:150,824,875...150,861,504
Ensembl chr 7:150,824,627...150,861,504
JBrowse link
G AOC2 amine oxidase copper containing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:42,844,580...42,850,707
Ensembl chr17:42,844,580...42,850,707
JBrowse link
G AOC3 amine oxidase copper containing 3 IDA
IBA
IEA
(PMID:9653080)
(PMID:21873635)
UniProtKB
GO_Central
PMID:9653080, PMID:21873635 GO_REF:0000104 NCBI chr17:42,851,182...42,858,130
Ensembl chr17:42,851,184...42,858,130
JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 IEA Ensembl GO_REF:0000107 NCBI chr15:74,719,542...74,725,528
Ensembl chr15:74,719,542...74,725,536
JBrowse link
G INMT indolethylamine N-methyltransferase IDA (PMID:10552930) UniProtKB PMID:10552930 NCBI chr 7:30,752,135...30,757,602
Ensembl chr 7:30,697,985...30,757,602
JBrowse link
G SULT1A1 sulfotransferase family 1A member 1 TAS (PMID:8661000) PINC PMID:8661000 NCBI chr16:28,605,587...28,623,395
Ensembl chr16:28,605,196...28,623,625
JBrowse link
G SULT1C2 sulfotransferase family 1C member 2 TAS (PMID:9169148) PINC PMID:9169148 NCBI chr 2:108,288,895...108,309,915
Ensembl chr 2:108,288,639...108,309,915
JBrowse link
G VCAM1 vascular cell adhesion molecule 1 IDA (PMID:23474851) UniProtKB PMID:23474851 NCBI chr 1:100,719,742...100,739,045
Ensembl chr 1:100,719,742...100,739,045
JBrowse link
'de novo' NAD biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFMID arylformamidase IEA UniProt GO_REF:0000104 NCBI chr17:78,185,102...78,207,702
Ensembl chr17:78,187,317...78,207,701
JBrowse link
G HAAO 3-hydroxyanthranilate 3,4-dioxygenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:42,767,087...42,801,002
Ensembl chr 2:42,767,089...42,792,593
JBrowse link
G IDO1 indoleamine 2,3-dioxygenase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:39,913,891...39,928,790
Ensembl chr 8:39,902,275...39,928,790
JBrowse link
G IDO2 indoleamine 2,3-dioxygenase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:39,934,955...40,016,391
Ensembl chr 8:39,934,614...40,016,391
JBrowse link
G KMO kynurenine 3-monooxygenase IEA UniProt GO_REF:0000104 NCBI chr 1:241,531,883...241,595,642
Ensembl chr 1:241,532,134...241,595,642
JBrowse link
G KYNU kynureninase IEA UniProt GO_REF:0000104 NCBI chr 2:142,877,664...143,055,833
Ensembl chr 2:142,877,657...143,055,833
JBrowse link
amine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SULT1A2 sulfotransferase family 1A member 2 TAS (PMID:9119390) PINC PMID:9119390 NCBI chr16:28,591,943...28,597,070
Ensembl chr16:28,591,943...28,597,050
JBrowse link
benzylpenicillin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCC2 ATP binding cassette subfamily C member 2 IEA Ensembl GO_REF:0000107 NCBI chr10:99,782,602...99,853,741
Ensembl chr10:99,782,640...99,852,594
JBrowse link
catecholamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRHR2 corticotropin releasing hormone receptor 2 ISO RGD PMID:17194738 RGD:5131263 NCBI chr 7:30,649,406...30,700,103
Ensembl chr 7:30,651,942...30,700,129
JBrowse link
G DBH dopamine beta-hydroxylase TAS Reactome Reactome:R-HSA-209905 NCBI chr 9:133,636,363...133,659,329
Ensembl chr 9:133,636,363...133,659,329
JBrowse link
G DDC dopa decarboxylase TAS
IEA
Reactome
UniProt
GO_REF:0000043, Reactome:R-HSA-209905 NCBI chr 7:50,458,436...50,565,460
Ensembl chr 7:50,458,436...50,565,405
JBrowse link
G HDC histidine decarboxylase IEA UniProt GO_REF:0000043 NCBI chr15:50,241,945...50,266,049
Ensembl chr15:50,241,947...50,265,965
JBrowse link
G PAH phenylalanine hydroxylase NAS (PMID:2872999) BHF-UCL PMID:2872999 NCBI chr12:102,836,889...102,958,441
Ensembl chr12:102,836,889...102,958,410
JBrowse link
G PNMT phenylethanolamine N-methyltransferase TAS Reactome Reactome:R-HSA-209905 NCBI chr17:39,668,019...39,670,475
Ensembl chr17:39,667,981...39,670,475
JBrowse link
G TH tyrosine hydroxylase TAS Reactome Reactome:R-HSA-209905 NCBI chr11:2,163,929...2,174,081
Ensembl chr11:2,163,929...2,171,877
Ensembl chr11:2,163,929...2,171,877
JBrowse link
catecholamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP000812.4 novel protein, ortholog of mouse Tomt IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr11:72,105,924...72,109,329 JBrowse link
G COMT catechol-O-methyltransferase IDA
IBA
(PMID:11559542), (PMID:15645182), (PMID:21846718)
(PMID:21873635)
UniProt
GO_Central
PMID:11559542, PMID:15645182, PMID:21846718, PMID:21873635 NCBI chr22:19,941,772...19,969,975
Ensembl chr22:19,941,733...19,969,975
Ensembl chr22:19,941,733...19,969,975
JBrowse link
G LRTOMT leucine rich transmembrane and O-methyltransferase domain containing ISS
IBA
(PMID:18794526)
(PMID:21873635)
UniProtKB
GO_Central
PMID:18794526, PMID:21873635 NCBI chr11:72,080,342...72,110,782
Ensembl chr11:72,080,337...72,096,895
Ensembl chr11:72,080,337...72,096,895
JBrowse link
catecholamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AOC2 amine oxidase copper containing 2 IEA UniProt GO_REF:0000043 NCBI chr17:42,844,580...42,850,707
Ensembl chr17:42,844,580...42,850,707
JBrowse link
G ATP7A ATPase copper transporting alpha ISS UniProtKB GO_REF:0000024 NCBI chr  X:77,910,693...78,050,395
Ensembl chr  X:77,910,656...78,050,395
JBrowse link
G COMT catechol-O-methyltransferase IEA UniProt GO_REF:0000043 NCBI chr22:19,941,772...19,969,975
Ensembl chr22:19,941,733...19,969,975
Ensembl chr22:19,941,733...19,969,975
JBrowse link
G DDC dopa decarboxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:50,458,436...50,565,460
Ensembl chr 7:50,458,436...50,565,405
JBrowse link
G MTPN myotrophin IEA Ensembl GO_REF:0000107 NCBI chr 7:135,926,760...135,977,359
Ensembl chr 7:135,926,760...135,977,359
JBrowse link
G SULT1A1 sulfotransferase family 1A member 1 IEA UniProt GO_REF:0000043 NCBI chr16:28,605,587...28,623,395
Ensembl chr16:28,605,196...28,623,625
JBrowse link
G SULT1A2 sulfotransferase family 1A member 2 IEA UniProt GO_REF:0000043 NCBI chr16:28,591,943...28,597,070
Ensembl chr16:28,591,943...28,597,050
JBrowse link
G SULT1A3 sulfotransferase family 1A member 3 IEA UniProt GO_REF:0000043 NCBI chr16:30,199,255...30,204,310
Ensembl chr16:30,199,228...30,204,310
JBrowse link
G SULT1A4 sulfotransferase family 1A member 4 IEA UniProt GO_REF:0000043 NCBI chr16:29,459,913...29,464,966
Ensembl chr16:29,459,889...29,464,976
Ensembl chr16:29,459,889...29,464,976
JBrowse link
cellular biogenic amine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAOA monoamine oxidase A TAS (PMID:8211186) PINC PMID:8211186 NCBI chr  X:43,655,006...43,746,817
Ensembl chr  X:43,654,907...43,746,824
JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO (MGI:3607765|PMID:15975715) MGI PMID:15975715 MGI:3607765 NCBI chr  X:154,021,573...154,097,717
Ensembl chr  X:154,021,573...154,137,103
JBrowse link
G SULT1B1 sulfotransferase family 1B member 1 TAS (PMID:9443824) PINC PMID:9443824 NCBI chr 4:69,721,167...69,760,644
Ensembl chr 4:69,721,167...69,787,961
JBrowse link
choline catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH7A1 aldehyde dehydrogenase 7 family member A1 TAS Reactome Reactome:R-HSA-6798163 NCBI chr 5:126,541,841...126,595,219
Ensembl chr 5:126,531,200...126,595,362
JBrowse link
G BHMT betaine--homocysteine S-methyltransferase TAS Reactome Reactome:R-HSA-6798163 NCBI chr 5:79,111,809...79,132,288
Ensembl chr 5:79,111,809...79,132,288
JBrowse link
G CHDH choline dehydrogenase TAS Reactome Reactome:R-HSA-6798163 NCBI chr 3:53,812,335...53,846,464
Ensembl chr 3:53,812,335...53,846,419
JBrowse link
G DMGDH dimethylglycine dehydrogenase TAS
IMP
(PMID:10102904) Reactome
UniProtKB
PMID:10102904 Reactome:R-HSA-6798163 NCBI chr 5:78,997,564...79,069,674
Ensembl chr 5:78,997,564...79,236,038
JBrowse link
G SARDH sarcosine dehydrogenase TAS Reactome Reactome:R-HSA-6798163 NCBI chr 9:133,663,074...133,739,958
Ensembl chr 9:133,663,560...133,739,955
JBrowse link
G SLC44A1 solute carrier family 44 member 1 TAS Reactome Reactome:R-HSA-6798163 NCBI chr 9:105,244,608...105,439,775
Ensembl chr 9:105,244,622...105,439,171
JBrowse link
dopamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGTR1 angiotensin II receptor type 1 ISO RGD PMID:20097214 RGD:6903884 NCBI chr 3:148,697,871...148,743,003
Ensembl chr 3:148,697,784...148,743,008
JBrowse link
G AGTR2 angiotensin II receptor type 2 IEA Ensembl GO_REF:0000107 NCBI chr  X:116,170,744...116,174,974
Ensembl chr  X:116,170,744...116,174,974
JBrowse link
G CHRNA7 cholinergic receptor nicotinic alpha 7 subunit ISO RGD PMID:12438507 RGD:704388 NCBI chr15:32,030,462...32,173,018
Ensembl chr15:31,923,438...32,173,018
JBrowse link
G CYP2D6 cytochrome P450 family 2 subfamily D member 6 ISO RGD PMID:19818757 RGD:5143981 NCBI chr22:42,126,499...42,130,810
Ensembl chr22:42,126,499...42,130,881
JBrowse link
G DAO D-amino acid oxidase IDA (PMID:17303072) UniProtKB PMID:17303072 NCBI chr12:108,880,030...108,901,043
Ensembl chr12:108,858,932...108,901,043
JBrowse link
G DDC dopa decarboxylase IEA UniProtKB GO_REF:0000041 NCBI chr 7:50,458,436...50,565,460
Ensembl chr 7:50,458,436...50,565,405
JBrowse link
G GCH1 GTP cyclohydrolase 1 IDA (PMID:16338639) UniProtKB PMID:16338639 NCBI chr14:54,842,016...54,902,826
Ensembl chr14:54,842,008...54,902,826
JBrowse link
G GPR37 G protein-coupled receptor 37 IEA Ensembl GO_REF:0000107 NCBI chr 7:124,743,885...124,765,792
Ensembl chr 7:124,743,885...124,765,792
JBrowse link
G NR4A2 nuclear receptor subfamily 4 group A member 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:156,324,432...156,332,724
Ensembl chr 2:156,324,437...156,342,348
JBrowse link
G SLC6A3 solute carrier family 6 member 3 IEA Ensembl GO_REF:0000107 NCBI chr 5:1,392,794...1,445,440
Ensembl chr 5:1,392,794...1,445,440
JBrowse link
G SNCA synuclein alpha TAS (PMID:21320589) UniProtKB PMID:21320589 NCBI chr 4:89,724,099...89,838,324
Ensembl chr 4:89,700,345...89,838,315
Ensembl chr 4:89,700,345...89,838,315
JBrowse link
G TGFB2 transforming growth factor beta 2 ISS UniProtKB GO_REF:0000024 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619
JBrowse link
G TH tyrosine hydroxylase IDA (PMID:12457228) BHF-UCL PMID:12457228 NCBI chr11:2,163,929...2,174,081
Ensembl chr11:2,163,929...2,171,877
Ensembl chr11:2,163,929...2,171,877
JBrowse link
dopamine biosynthetic process from tyrosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TH tyrosine hydroxylase NAS
IBA
(PMID:10907721)
(PMID:21873635)
BHF-UCL
GO_Central
PMID:10907721, PMID:21873635 NCBI chr11:2,163,929...2,174,081
Ensembl chr11:2,163,929...2,171,877
Ensembl chr11:2,163,929...2,171,877
JBrowse link
dopamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COMT catechol-O-methyltransferase IEA Ensembl GO_REF:0000107 NCBI chr22:19,941,772...19,969,975
Ensembl chr22:19,941,733...19,969,975
Ensembl chr22:19,941,733...19,969,975
JBrowse link
G DBH dopamine beta-hydroxylase IDA
IBA
(PMID:3443096), (PMID:7961964)
(PMID:21873635)
UniProtKB
GO_Central
PMID:3443096, PMID:7961964, PMID:21873635 NCBI chr 9:133,636,363...133,659,329
Ensembl chr 9:133,636,363...133,659,329
JBrowse link
G MAOA monoamine oxidase A TAS (PMID:24252804) ParkinsonsUK-UCL PMID:24252804 NCBI chr  X:43,655,006...43,746,817
Ensembl chr  X:43,654,907...43,746,824
JBrowse link
G MAOB monoamine oxidase B TAS (PMID:24252804) ParkinsonsUK-UCL PMID:24252804 NCBI chr  X:43,766,610...43,882,450
Ensembl chr  X:43,766,610...43,882,450
JBrowse link
G MOXD1 monooxygenase DBH like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:132,296,055...132,401,520
Ensembl chr 6:132,296,055...132,401,475
JBrowse link
G MOXD2P monooxygenase DBH like 2, pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:142,240,737...142,247,067
Ensembl chr 7:142,240,740...142,247,067
JBrowse link
G SLC6A3 solute carrier family 6 member 3 IEA Ensembl GO_REF:0000107 NCBI chr 5:1,392,794...1,445,440
Ensembl chr 5:1,392,794...1,445,440
JBrowse link
G SULT1A3 sulfotransferase family 1A member 3 IDA (PMID:23207770) CAFA PMID:23207770 NCBI chr16:30,199,255...30,204,310
Ensembl chr16:30,199,228...30,204,310
JBrowse link
G SULT1A4 sulfotransferase family 1A member 4 IDA (PMID:23207770) CAFA PMID:23207770 NCBI chr16:29,459,913...29,464,966
Ensembl chr16:29,459,889...29,464,976
Ensembl chr16:29,459,889...29,464,976
JBrowse link
dopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP000812.4 novel protein, ortholog of mouse Tomt IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr11:72,105,924...72,109,329 JBrowse link
G ATP7A ATPase copper transporting alpha ISS UniProtKB GO_REF:0000024 NCBI chr  X:77,910,693...78,050,395
Ensembl chr  X:77,910,656...78,050,395
JBrowse link
G COMT catechol-O-methyltransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:19,941,772...19,969,975
Ensembl chr22:19,941,733...19,969,975
Ensembl chr22:19,941,733...19,969,975
JBrowse link
G CYP2D6 cytochrome P450 family 2 subfamily D member 6 ISO RGD PMID:10945868 RGD:1599723 NCBI chr22:42,126,499...42,130,810
Ensembl chr22:42,126,499...42,130,881
JBrowse link
G DRD1 dopamine receptor D1 IC (PMID:8301582) BHF-UCL PMID:8301582 NCBI chr 5:175,440,036...175,444,182
Ensembl chr 5:175,440,036...175,444,182
JBrowse link
G DRD2 dopamine receptor D2 IC (PMID:8301582) BHF-UCL PMID:8301582 NCBI chr11:113,409,605...113,475,398
Ensembl chr11:113,409,605...113,475,691
JBrowse link
G DRD3 dopamine receptor D3 IC (PMID:8301582) BHF-UCL PMID:8301582 NCBI chr 3:114,127,580...114,199,407
Ensembl chr 3:114,127,580...114,199,407
Ensembl chr 3:114,127,580...114,199,407
JBrowse link
G DRD4 dopamine receptor D4 IC (PMID:1840645) BHF-UCL PMID:1840645 NCBI chr11:637,269...640,706
Ensembl chr11:637,269...640,706
JBrowse link
G GRIN2A glutamate ionotropic receptor NMDA type subunit 2A IEA Ensembl GO_REF:0000107 NCBI chr16:9,753,404...10,182,928
Ensembl chr16:9,753,404...10,182,928
Ensembl chr16:9,753,404...10,182,928
JBrowse link
G HPRT1 hypoxanthine phosphoribosyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr  X:134,460,165...134,500,668
Ensembl chr  X:134,460,165...134,520,513
JBrowse link
G LRTOMT leucine rich transmembrane and O-methyltransferase domain containing IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:72,080,342...72,110,782
Ensembl chr11:72,080,337...72,096,895
Ensembl chr11:72,080,337...72,096,895
JBrowse link
G NDUFS4 NADH:ubiquinone oxidoreductase subunit S4 ISO (MGI:6150107|PMID:28327638) MGI PMID:28327638 MGI:6150107 NCBI chr 5:53,560,610...53,683,338
Ensembl chr 5:53,560,633...53,683,338
JBrowse link
G NPR1 natriuretic peptide receptor 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:153,678,649...153,693,992
Ensembl chr 1:153,678,688...153,693,992
JBrowse link
G NR4A2 nuclear receptor subfamily 4 group A member 2 ISO (MGI:3529728|PMID:12385813) MGI PMID:12385813 MGI:3529728 NCBI chr 2:156,324,432...156,332,724
Ensembl chr 2:156,324,437...156,342,348
JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase NOT TAS
ISO
(PMID:23626584)
(MGI:3525458|PMID:15684050)
ParkinsonsUK-UCL
MGI
PMID:15684050, PMID:23626584 MGI:3525458 NCBI chr 6:161,347,417...162,727,802
Ensembl chr 6:161,347,417...162,727,771
Ensembl chr 6:161,347,417...162,727,771
JBrowse link
G SNCA synuclein alpha ISO (MGI:3057254|PMID:15465911) MGI PMID:15465911 MGI:3057254 NCBI chr 4:89,724,099...89,838,324
Ensembl chr 4:89,700,345...89,838,315
Ensembl chr 4:89,700,345...89,838,315
JBrowse link
G SNCAIP synuclein alpha interacting protein IDA (PMID:14506261) MGI PMID:14506261 NCBI chr 5:122,311,354...122,464,219
Ensembl chr 5:122,311,354...122,464,219
JBrowse link
G SNCB synuclein beta IEA Ensembl GO_REF:0000107 NCBI chr 5:176,620,082...176,630,556
Ensembl chr 5:176,620,082...176,630,556
JBrowse link
G SPR sepiapterin reductase ISO (MGI:3722569|PMID:16532389) MGI PMID:16532389 MGI:3722569 NCBI chr 2:72,887,408...72,892,158
Ensembl chr 2:72,887,382...72,892,158
JBrowse link
epinephrine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PNMT phenylethanolamine N-methyltransferase IEA UniProtKB GO_REF:0000041 NCBI chr17:39,668,019...39,670,475
Ensembl chr17:39,667,981...39,670,475
JBrowse link
G TH tyrosine hydroxylase IDA (PMID:12457228) BHF-UCL PMID:12457228 NCBI chr11:2,163,929...2,174,081
Ensembl chr11:2,163,929...2,171,877
Ensembl chr11:2,163,929...2,171,877
JBrowse link
epinephrine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha ISS UniProtKB GO_REF:0000024 NCBI chr  X:77,910,693...78,050,395
Ensembl chr  X:77,910,656...78,050,395
JBrowse link
ethanolamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHKA choline kinase alpha IEA Ensembl GO_REF:0000107 NCBI chr11:68,052,859...68,121,389
Ensembl chr11:68,052,859...68,121,444
JBrowse link
G GDE1 glycerophosphodiester phosphodiesterase 1 ISS UniProt GO_REF:0000024 NCBI chr16:19,501,693...19,522,098
Ensembl chr16:19,501,693...19,522,123
JBrowse link
histamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDC histidine decarboxylase TAS
IBA
IDA
IEA
(PMID:21873635)
(PMID:22767596)
Reactome
GO_Central
UniProtKB
PMID:21873635, PMID:22767596 GO_REF:0000041, Reactome:R-HSA-977301 NCBI chr15:50,241,945...50,266,049
Ensembl chr15:50,241,947...50,265,965
JBrowse link
G PRG3 proteoglycan 3, pro eosinophil major basic protein 2 IDA (PMID:10318872) UniProtKB PMID:10318872 NCBI chr11:57,376,769...57,381,150
Ensembl chr11:57,376,769...57,381,150
JBrowse link
histamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNMT histamine N-methyltransferase IDA (PMID:26206890) UniProtKB PMID:26206890 NCBI chr 2:137,964,068...138,016,364
Ensembl chr 2:137,964,020...138,016,364
JBrowse link
histamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDC histidine decarboxylase ISO RGD PMID:5898, PMID:4449071, PMID:7075603, PMID:9525922 RGD:2303726, RGD:2303727, RGD:2303728, RGD:2303735 NCBI chr15:50,241,945...50,266,049
Ensembl chr15:50,241,947...50,265,965
JBrowse link
G HNMT histamine N-methyltransferase IMP (PMID:23505051) ARUK-UCL PMID:23505051 NCBI chr 2:137,964,068...138,016,364
Ensembl chr 2:137,964,020...138,016,364
JBrowse link
G SLC22A3 solute carrier family 22 member 3 TAS (PMID:23505051) ARUK-UCL PMID:23505051 NCBI chr 6:160,348,378...160,454,982
Ensembl chr 6:160,348,378...160,452,577
JBrowse link
G SLC29A4 solute carrier family 29 member 4 TAS (PMID:23505051) ARUK-UCL PMID:23505051 NCBI chr 7:5,274,311...5,306,912
Ensembl chr 7:5,274,369...5,306,870
JBrowse link
G TRH thyrotropin releasing hormone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:129,974,720...129,977,935
Ensembl chr 3:129,974,688...129,977,935
JBrowse link
indolalkylamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AANAT aralkylamine N-acetyltransferase TAS Reactome Reactome:R-HSA-209931 NCBI chr17:76,453,351...76,470,797
Ensembl chr17:76,453,351...76,470,117
JBrowse link
G ASMT acetylserotonin O-methyltransferase TAS Reactome Reactome:R-HSA-209931 NCBI chr  Y:1,595,455...1,643,081
NCBI chr  X:1,595,455...1,643,081
Ensembl chr  X:1,615,059...1,643,081
JBrowse link
G DDC dopa decarboxylase TAS Reactome Reactome:R-HSA-209931 NCBI chr 7:50,458,436...50,565,460
Ensembl chr 7:50,458,436...50,565,405
JBrowse link
G TPH1 tryptophan hydroxylase 1 TAS Reactome Reactome:R-HSA-209931 NCBI chr11:18,017,555...18,046,269
Ensembl chr11:18,017,564...18,042,426
JBrowse link
G TPH2 tryptophan hydroxylase 2 TAS Reactome Reactome:R-HSA-209931 NCBI chr12:71,938,845...72,032,440
Ensembl chr12:71,938,845...72,186,618
JBrowse link
N-acylethanolamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABHD4 abhydrolase domain containing 4, N-acyl phospholipase B ISO (MGI:3695251|PMID:16818490) MGI PMID:16818490 MGI:3695251 NCBI chr14:22,598,238...22,612,864
Ensembl chr14:22,598,237...22,613,215
JBrowse link
G GDE1 glycerophosphodiester phosphodiesterase 1 ISS UniProtKB
UniProt
GO_REF:0000024 NCBI chr16:19,501,693...19,522,098
Ensembl chr16:19,501,693...19,522,123
JBrowse link
G GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 IMP
IBA
(PMID:25596343), (PMID:27637550)
(PMID:21873635)
MGI
GO_Central
PMID:21873635, PMID:25596343, PMID:27637550 NCBI chr17:59,220,470...59,275,970
Ensembl chr17:59,220,467...59,275,970
JBrowse link
G GDPD3 glycerophosphodiester phosphodiesterase domain containing 3 IMP (PMID:27637550) UniProt PMID:27637550 NCBI chr16:30,104,810...30,113,537
Ensembl chr16:30,104,810...30,113,537
JBrowse link
G NAAA N-acylethanolamine acid amidase IDA (PMID:15655246), (PMID:30301806) UniProt PMID:15655246, PMID:30301806 NCBI chr 4:75,910,655...75,941,013
Ensembl chr 4:75,913,660...75,941,013
JBrowse link
G NAPEPLD N-acyl phosphatidylethanolamine phospholipase D IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:103,099,776...103,150,001
Ensembl chr 7:103,099,776...103,149,560
JBrowse link
negative regulation of arginine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP2B4 ATPase plasma membrane Ca2+ transporting 4 IDA (PMID:19278978) BHF-UCL PMID:19278978 NCBI chr 1:203,626,832...203,744,081
Ensembl chr 1:203,626,787...203,744,081
Ensembl chr 1:203,626,787...203,744,081
JBrowse link
negative regulation of catecholamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha ISO (MGI:54307|PMID:17511) MGI PMID:17511 MGI:54307 NCBI chr  X:77,910,693...78,050,395
Ensembl chr  X:77,910,656...78,050,395
JBrowse link
negative regulation of citrulline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP2B4 ATPase plasma membrane Ca2+ transporting 4 IDA (PMID:19278978) BHF-UCL PMID:19278978 NCBI chr 1:203,626,832...203,744,081
Ensembl chr 1:203,626,787...203,744,081
Ensembl chr 1:203,626,787...203,744,081
JBrowse link
negative regulation of dopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COMT catechol-O-methyltransferase IEA Ensembl GO_REF:0000107 NCBI chr22:19,941,772...19,969,975
Ensembl chr22:19,941,733...19,969,975
Ensembl chr22:19,941,733...19,969,975
JBrowse link
G HTR2C 5-hydroxytryptamine receptor 2C ISO RGD PMID:17018023 RGD:1625003 NCBI chr  X:114,584,078...114,910,061
Ensembl chr  X:114,584,078...114,910,061
JBrowse link
G ITGAM integrin subunit alpha M ISS ARUK-UCL GO_REF:0000024 NCBI chr16:31,259,975...31,332,877
Ensembl chr16:31,259,967...31,332,892
JBrowse link
G ITGB2 integrin subunit beta 2 NAS (PMID:18981141) ARUK-UCL PMID:18981141 NCBI chr21:44,885,949...44,928,815
Ensembl chr21:44,885,953...44,931,989
JBrowse link
G SNCA synuclein alpha IEA Ensembl GO_REF:0000107 NCBI chr 4:89,724,099...89,838,324
Ensembl chr 4:89,700,345...89,838,315
Ensembl chr 4:89,700,345...89,838,315
JBrowse link
negative regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATCAY ATCAY kinesin light chain interacting caytaxin IDA (PMID:16899818) UniProtKB PMID:16899818 NCBI chr19:3,880,685...3,928,082
Ensembl chr19:3,879,864...3,928,082
JBrowse link
nor-spermidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 IDA (PMID:12803540) UniProtKB PMID:12803540 NCBI chr17:7,626,234...7,627,878
Ensembl chr17:7,626,234...7,627,876
JBrowse link
norepinephrine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha ISO (MGI:53801|PMID:4405722)
(MGI:53940|PMID:4858102)
MGI PMID:4405722, PMID:4858102 MGI:53801, MGI:53940 NCBI chr  X:77,910,693...78,050,395
Ensembl chr  X:77,910,656...78,050,395
JBrowse link
G DBH dopamine beta-hydroxylase IEA
IBA
IMP
(PMID:21873635)
(PMID:27148966)
UniProtKB
GO_Central
PMID:21873635, PMID:27148966 GO_REF:0000041 NCBI chr 9:133,636,363...133,659,329
Ensembl chr 9:133,636,363...133,659,329
JBrowse link
G EPAS1 endothelial PAS domain protein 1 ISO RGD PMID:19457096 RGD:5128877 NCBI chr 2:46,297,407...46,386,697
Ensembl chr 2:46,293,667...46,386,697
JBrowse link
G GATA3 GATA binding protein 3 ISS UniProtKB GO_REF:0000024 NCBI chr10:8,045,420...8,075,198
Ensembl chr10:8,045,378...8,075,198
JBrowse link
G INSM1 INSM transcriptional repressor 1 ISS UniProtKB GO_REF:0000024 NCBI chr20:20,368,104...20,370,949
Ensembl chr20:20,368,104...20,370,949
JBrowse link
G KL klotho ISO RGD PMID:20086041 RGD:10403068 NCBI chr13:33,016,063...33,066,143
Ensembl chr13:33,016,423...33,066,143
JBrowse link
G MOXD1 monooxygenase DBH like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:132,296,055...132,401,520
Ensembl chr 6:132,296,055...132,401,475
JBrowse link
G MOXD2P monooxygenase DBH like 2, pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:142,240,737...142,247,067
Ensembl chr 7:142,240,740...142,247,067
JBrowse link
G TH tyrosine hydroxylase IDA (PMID:12457228) BHF-UCL PMID:12457228 NCBI chr11:2,163,929...2,174,081
Ensembl chr11:2,163,929...2,171,877
Ensembl chr11:2,163,929...2,171,877
JBrowse link
norepinephrine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1B1 aldo-keto reductase family 1 member B IEA Ensembl GO_REF:0000107 NCBI chr 7:134,442,350...134,459,239
Ensembl chr 7:134,442,356...134,459,284
JBrowse link
G ATP7A ATPase copper transporting alpha ISS UniProtKB GO_REF:0000024 NCBI chr  X:77,910,693...78,050,395
Ensembl chr  X:77,910,656...78,050,395
JBrowse link
G EPAS1 endothelial PAS domain protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:46,297,407...46,386,697
Ensembl chr 2:46,293,667...46,386,697
JBrowse link
G LY6E lymphocyte antigen 6 family member E ISO (MGI:2157257|PMID:11784869) MGI PMID:11784869 MGI:2157257 NCBI chr 8:143,018,529...143,022,409
Ensembl chr 8:143,017,982...143,023,832
JBrowse link
G PNMT phenylethanolamine N-methyltransferase ISO RGD PMID:3945626 RGD:5130757 NCBI chr17:39,668,019...39,670,475
Ensembl chr17:39,667,981...39,670,475
JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase IEA Ensembl GO_REF:0000107 NCBI chr 6:161,347,417...162,727,802
Ensembl chr 6:161,347,417...162,727,771
Ensembl chr 6:161,347,417...162,727,771
JBrowse link
G RNF180 ring finger protein 180 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:64,165,311...64,372,879
Ensembl chr 5:64,165,843...64,372,869
JBrowse link
G RTL4 retrotransposon Gag like 4 IEA Ensembl GO_REF:0000107 NCBI chr  X:112,083,025...112,457,245
Ensembl chr  X:112,454,500...112,457,112
JBrowse link
G SPR sepiapterin reductase ISO (MGI:3722569|PMID:16532389) MGI PMID:16532389 MGI:3722569 NCBI chr 2:72,887,408...72,892,158
Ensembl chr 2:72,887,382...72,892,158
JBrowse link
octopamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBH dopamine beta-hydroxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:133,636,363...133,659,329
Ensembl chr 9:133,636,363...133,659,329
JBrowse link
G MOXD1 monooxygenase DBH like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:132,296,055...132,401,520
Ensembl chr 6:132,296,055...132,401,475
JBrowse link
G MOXD2P monooxygenase DBH like 2, pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:142,240,737...142,247,067
Ensembl chr 7:142,240,740...142,247,067
JBrowse link
octopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBH dopamine beta-hydroxylase ISO RGD PMID:11521740 RGD:1625401 NCBI chr 9:133,636,363...133,659,329
Ensembl chr 9:133,636,363...133,659,329
JBrowse link
phenylethylamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAOA monoamine oxidase A ISO RGD PMID:11754741 RGD:1600709 NCBI chr  X:43,655,006...43,746,817
Ensembl chr  X:43,654,907...43,746,824
JBrowse link
polyamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC005258.1 novel protein, readthrough between OAZ1 and SPPL2B IEA UniProt GO_REF:0000043 Ensembl chr19:2,269,525...2,341,172 JBrowse link
G AZIN1 antizyme inhibitor 1 IEA InterPro GO_REF:0000002 NCBI chr 8:102,826,302...102,864,200
Ensembl chr 8:102,826,308...102,893,864
JBrowse link
G AZIN2 antizyme inhibitor 2 IEA InterPro GO_REF:0000002 NCBI chr 1:33,081,152...33,162,288
Ensembl chr 1:33,081,104...33,123,492
JBrowse link
G OAZ1 ornithine decarboxylase antizyme 1 IEA UniProt GO_REF:0000043 NCBI chr19:2,269,486...2,273,488
Ensembl chr19:2,269,509...2,273,490
JBrowse link
G OAZ2 ornithine decarboxylase antizyme 2 IEA UniProt GO_REF:0000043 NCBI chr15:64,687,574...64,703,281
Ensembl chr15:64,687,573...64,703,281
JBrowse link
G OAZ3 ornithine decarboxylase antizyme 3 IEA UniProt GO_REF:0000043 NCBI chr 1:151,762,969...151,771,330
Ensembl chr 1:151,762,899...151,771,334
JBrowse link
G ODC1 ornithine decarboxylase 1 IEA InterPro GO_REF:0000002 NCBI chr 2:10,439,968...10,448,327
Ensembl chr 2:10,439,968...10,448,327
JBrowse link
G PAOX polyamine oxidase TAS Reactome Reactome:R-HSA-351200 NCBI chr10:133,379,262...133,391,694
Ensembl chr10:133,380,017...133,420,271
Ensembl chr10:133,380,017...133,420,271
JBrowse link
G SAT1 spermidine/spermine N1-acetyltransferase 1 TAS
IDA
(PMID:15283699) Reactome
UniProt
PMID:15283699 Reactome:R-HSA-351200 NCBI chr  X:23,783,158...23,786,223
Ensembl chr  X:23,783,173...23,786,226
JBrowse link
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 NOT IDA (PMID:15283699) UniProt PMID:15283699 NCBI chr17:7,626,234...7,627,878
Ensembl chr17:7,626,234...7,627,876
JBrowse link
G SMOX spermine oxidase TAS Reactome Reactome:R-HSA-351200 NCBI chr20:4,148,828...4,187,732
Ensembl chr20:4,120,980...4,187,747
JBrowse link
G SRM spermidine synthase IEA
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr 1:11,054,589...11,060,053
Ensembl chr 1:11,054,584...11,060,020
JBrowse link
polyamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAOX polyamine oxidase IDA (PMID:12477380) UniProtKB PMID:12477380 NCBI chr10:133,379,262...133,391,694
Ensembl chr10:133,380,017...133,420,271
Ensembl chr10:133,380,017...133,420,271
JBrowse link
G SAT1 spermidine/spermine N1-acetyltransferase 1 ISO RGD PMID:15541750 RGD:7244190 NCBI chr  X:23,783,158...23,786,223
Ensembl chr  X:23,783,173...23,786,226
JBrowse link
G SMOX spermine oxidase IDA (PMID:12477380) UniProtKB PMID:12477380 NCBI chr20:4,148,828...4,187,732
Ensembl chr20:4,120,980...4,187,747
JBrowse link
polyamine deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC10 histone deacetylase 10 IDA (PMID:28516954) UniProt PMID:28516954 NCBI chr22:50,245,183...50,251,265
Ensembl chr22:50,245,183...50,251,405
JBrowse link
G HDAC6 histone deacetylase 6 NOT IDA (PMID:28516954) UniProt PMID:28516954 NCBI chr  X:48,801,398...48,824,982
Ensembl chr  X:48,801,377...48,824,982
JBrowse link
polyamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 TAS Reactome Reactome:R-HSA-351202 NCBI chr 6:110,814,617...110,895,713
Ensembl chr 6:110,874,770...110,898,879
JBrowse link
G OAZ2 ornithine decarboxylase antizyme 2 IEA
TAS
(PMID:9428668) InterPro
PINC
PMID:9428668 GO_REF:0000002 NCBI chr15:64,687,574...64,703,281
Ensembl chr15:64,687,573...64,703,281
JBrowse link
G ODC1 ornithine decarboxylase 1 TAS Reactome Reactome:R-HSA-351202 NCBI chr 2:10,439,968...10,448,327
Ensembl chr 2:10,439,968...10,448,327
JBrowse link
G SAT1 spermidine/spermine N1-acetyltransferase 1 ISO RGD PMID:11172929 RGD:1599544 NCBI chr  X:23,783,158...23,786,223
Ensembl chr  X:23,783,173...23,786,226
JBrowse link
G SMS spermine synthase TAS Reactome Reactome:R-HSA-351202 NCBI chr  X:21,940,709...21,994,837
Ensembl chr  X:21,940,709...21,994,837
JBrowse link
G SRM spermidine synthase TAS Reactome Reactome:R-HSA-351202 NCBI chr 1:11,054,589...11,060,053
Ensembl chr 1:11,054,584...11,060,020
JBrowse link
positive regulation of acetylcholine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PEBP1 phosphatidylethanolamine binding protein 1 ISO RGD PMID:8888012 RGD:2302806 NCBI chr12:118,136,124...118,145,584
Ensembl chr12:118,136,124...118,145,584
JBrowse link
positive regulation of ammonia assimilation cycle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NR1H4 nuclear receptor subfamily 1 group H member 4 IEA Ensembl GO_REF:0000107 NCBI chr12:100,473,866...100,564,414
Ensembl chr12:100,473,708...100,564,414
JBrowse link
positive regulation of dopamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPAS1 endothelial PAS domain protein 1 ISO RGD PMID:19457096 RGD:5128877 NCBI chr 2:46,297,407...46,386,697
Ensembl chr 2:46,293,667...46,386,697
JBrowse link
G PARK7 Parkinsonism associated deglycase IC
IDA
(PMID:16731528)
(PMID:19703902)
ParkinsonsUK-UCL PMID:16731528, PMID:19703902 NCBI chr 1:7,961,711...7,985,505
Ensembl chr 1:7,954,291...7,985,505
JBrowse link
G VPS35 VPS35 retromer complex component IEA Ensembl GO_REF:0000107 NCBI chr16:46,656,132...46,689,194
Ensembl chr16:46,656,132...46,689,518
JBrowse link
positive regulation of dopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABAT 4-aminobutyrate aminotransferase IEA Ensembl GO_REF:0000107 NCBI chr16:8,674,617...8,784,575
Ensembl chr16:8,674,596...8,784,575
JBrowse link
G GPR37 G protein-coupled receptor 37 IEA Ensembl GO_REF:0000107 NCBI chr 7:124,743,885...124,765,792
Ensembl chr 7:124,743,885...124,765,792
JBrowse link
G HPRT1 hypoxanthine phosphoribosyltransferase 1 IMP (PMID:8643611) UniProtKB PMID:8643611 NCBI chr  X:134,460,165...134,500,668
Ensembl chr  X:134,460,165...134,520,513
JBrowse link
G MAOB monoamine oxidase B IEA Ensembl GO_REF:0000107 NCBI chr  X:43,766,610...43,882,450
Ensembl chr  X:43,766,610...43,882,450
JBrowse link
G NPY neuropeptide Y ISO RGD PMID:19579268 RGD:10448966 NCBI chr 7:24,284,190...24,291,862
Ensembl chr 7:24,284,188...24,291,862
JBrowse link
positive regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NR1H4 nuclear receptor subfamily 1 group H member 4 ISS (PMID:21757002) BHF-UCL PMID:21757002 NCBI chr12:100,473,866...100,564,414
Ensembl chr12:100,473,708...100,564,414
JBrowse link
positive regulation of homocysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COMT catechol-O-methyltransferase IEA Ensembl GO_REF:0000107 NCBI chr22:19,941,772...19,969,975
Ensembl chr22:19,941,733...19,969,975
Ensembl chr22:19,941,733...19,969,975
JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARK7 Parkinsonism associated deglycase IMP (PMID:16731528) ParkinsonsUK-UCL PMID:16731528 NCBI chr 1:7,961,711...7,985,505
Ensembl chr 1:7,954,291...7,985,505
JBrowse link
positive regulation of spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAOX polyamine oxidase IDA (PMID:16354669) UniProtKB PMID:16354669 NCBI chr10:133,379,262...133,391,694
Ensembl chr10:133,380,017...133,420,271
Ensembl chr10:133,380,017...133,420,271
JBrowse link
positive regulation of transcription from RNA polymerase II promoter involved in norepinephrine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HAND2 heart and neural crest derivatives expressed 2 ISS BHF-UCL GO_REF:0000024 NCBI chr 4:173,526,091...173,530,229
Ensembl chr 4:173,524,969...173,530,229
JBrowse link
putrescine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 IDA (PMID:12803540) UniProtKB PMID:12803540 NCBI chr17:7,626,234...7,627,878
Ensembl chr17:7,626,234...7,627,876
JBrowse link
putrescine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ODC1 ornithine decarboxylase 1 ISO RGD PMID:1415709, PMID:10430362 RGD:1578320, RGD:7242912 NCBI chr 2:10,439,968...10,448,327
Ensembl chr 2:10,439,968...10,448,327
JBrowse link
G PAOX polyamine oxidase IDA (PMID:16354669) UniProtKB PMID:16354669 NCBI chr10:133,379,262...133,391,694
Ensembl chr10:133,380,017...133,420,271
Ensembl chr10:133,380,017...133,420,271
JBrowse link
putrescine biosynthetic process from arginine, using agmatinase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGMAT agmatinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:15,571,699...15,585,051
Ensembl chr 1:15,571,699...15,585,051
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN1 antizyme inhibitor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:102,826,302...102,864,200
Ensembl chr 8:102,826,308...102,893,864
JBrowse link
G AZIN2 antizyme inhibitor 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:33,081,152...33,162,288
Ensembl chr 1:33,081,104...33,123,492
JBrowse link
G ODC1 ornithine decarboxylase 1 IEA
IBA
ISS
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024, GO_REF:0000041 NCBI chr 2:10,439,968...10,448,327
Ensembl chr 2:10,439,968...10,448,327
JBrowse link
putrescine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAOX polyamine oxidase IDA (PMID:16354669) UniProtKB PMID:16354669 NCBI chr10:133,379,262...133,391,694
Ensembl chr10:133,380,017...133,420,271
Ensembl chr10:133,380,017...133,420,271
JBrowse link
G SAT1 spermidine/spermine N1-acetyltransferase 1 IEA UniProtKB GO_REF:0000041 NCBI chr  X:23,783,158...23,786,223
Ensembl chr  X:23,783,173...23,786,226
JBrowse link
putrescine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AOC1 amine oxidase copper containing 1 IMP (PMID:8144586) UniProt PMID:8144586 NCBI chr 7:150,824,875...150,861,504
Ensembl chr 7:150,824,627...150,861,504
JBrowse link
regulation of 'de novo' NAD biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACMSD aminocarboxymuconate semialdehyde decarboxylase TAS (PMID:12140278), (PMID:19843166) ParkinsonsUK-UCL PMID:12140278, PMID:19843166 NCBI chr 2:134,838,319...134,902,906
Ensembl chr 2:134,838,616...134,902,034
JBrowse link
regulation of acetylcholine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FSHR follicle stimulating hormone receptor IEA Ensembl GO_REF:0000107 NCBI chr 2:48,953,161...49,154,527
Ensembl chr 2:48,962,157...49,154,527
Ensembl chr 2:48,962,157...49,154,527
JBrowse link
regulation of arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISS UniProt GO_REF:0000024 NCBI chr16:28,466,653...28,492,082
Ensembl chr16:28,456,371...28,492,098
Ensembl chr16:28,456,371...28,492,098
JBrowse link
regulation of arginine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FH fumarate hydratase ISS UniProt GO_REF:0000024 NCBI chr 1:241,497,603...241,519,755
Ensembl chr 1:241,497,603...241,519,761
Ensembl chr 1:241,497,603...241,519,761
JBrowse link
G SLC7A7 solute carrier family 7 member 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:22,773,222...22,819,796
Ensembl chr14:22,773,222...22,829,820
JBrowse link
regulation of catecholamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VHL von Hippel-Lindau tumor suppressor ISO RGD PMID:11912140 RGD:619592 NCBI chr 3:10,141,778...10,153,667
Ensembl chr 3:10,141,008...10,152,220
Ensembl chr 3:10,141,008...10,152,220
JBrowse link
regulation of cellular amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN1 antizyme inhibitor 1 TAS Reactome Reactome:R-HSA-350562 NCBI chr 8:102,826,302...102,864,200
Ensembl chr 8:102,826,308...102,893,864
JBrowse link
G INS insulin IMP (PMID:3553851) BHF-UCL PMID:3553851 NCBI chr11:2,159,779...2,161,209
Ensembl chr11:2,159,779...2,161,341
Ensembl chr11:2,159,779...2,161,341
JBrowse link
G NQO1 NAD(P)H quinone dehydrogenase 1 TAS Reactome Reactome:R-HSA-350562 NCBI chr16:69,709,401...69,726,560
Ensembl chr16:69,706,996...69,726,668
JBrowse link
G OAZ1 ornithine decarboxylase antizyme 1 TAS Reactome Reactome:R-HSA-350562 NCBI chr19:2,269,486...2,273,488
Ensembl chr19:2,269,509...2,273,490
JBrowse link
G OAZ2 ornithine decarboxylase antizyme 2 TAS Reactome Reactome:R-HSA-350562 NCBI chr15:64,687,574...64,703,281
Ensembl chr15:64,687,573...64,703,281
JBrowse link
G OAZ3 ornithine decarboxylase antizyme 3 TAS Reactome Reactome:R-HSA-350562 NCBI chr 1:151,762,969...151,771,330
Ensembl chr 1:151,762,899...151,771,334
JBrowse link
G ODC1 ornithine decarboxylase 1 TAS Reactome Reactome:R-HSA-350562 NCBI chr 2:10,439,968...10,448,327
Ensembl chr 2:10,439,968...10,448,327
JBrowse link
G PSMA1 proteasome 20S subunit alpha 1 TAS Reactome Reactome:R-HSA-350562 NCBI chr11:14,504,876...14,643,662
Ensembl chr11:14,504,874...14,643,635
JBrowse link
G PSMA2 proteasome 20S subunit alpha 2 TAS Reactome Reactome:R-HSA-350562 NCBI chr 7:42,916,861...42,932,174
Ensembl chr 7:42,909,273...42,932,174
Ensembl chr 7:42,909,273...42,932,174
JBrowse link
G PSMA3 proteasome 20S subunit alpha 3 TAS Reactome Reactome:R-HSA-350562 NCBI chr14:58,244,843...58,272,004
Ensembl chr14:58,244,843...58,272,012
JBrowse link
G PSMA4 proteasome 20S subunit alpha 4 TAS Reactome Reactome:R-HSA-350562 NCBI chr15:78,540,405...78,552,417
Ensembl chr15:78,540,405...78,552,417
JBrowse link
G PSMA5 proteasome 20S subunit alpha 5 TAS Reactome Reactome:R-HSA-350562 NCBI chr 1:109,399,042...109,426,448
Ensembl chr 1:109,399,042...109,426,448
JBrowse link
G PSMA6 proteasome 20S subunit alpha 6 TAS Reactome Reactome:R-HSA-350562 NCBI chr14:35,278,558...35,317,493
Ensembl chr14:35,278,633...35,317,493
JBrowse link
G PSMA7 proteasome 20S subunit alpha 7 TAS Reactome Reactome:R-HSA-350562 NCBI chr20:62,136,733...62,143,394
Ensembl chr20:62,136,733...62,143,440
JBrowse link
G PSMA8 proteasome 20S subunit alpha 8 TAS Reactome Reactome:R-HSA-350562 NCBI chr18:26,133,869...26,193,355
Ensembl chr18:26,133,852...26,193,355
JBrowse link
G PSMB1 proteasome 20S subunit beta 1 TAS Reactome Reactome:R-HSA-350562 NCBI chr 6:170,535,120...170,553,307
Ensembl chr 6:170,535,120...170,553,307
JBrowse link
G PSMB10 proteasome 20S subunit beta 10 TAS Reactome Reactome:R-HSA-350562 NCBI chr16:67,934,506...67,936,850
Ensembl chr16:67,934,506...67,936,864
JBrowse link
G PSMB11 proteasome subunit beta 11 TAS Reactome Reactome:R-HSA-350562 NCBI chr14:23,042,212...23,044,060
Ensembl chr14:23,042,212...23,044,060
JBrowse link
G PSMB2 proteasome 20S subunit beta 2 TAS Reactome Reactome:R-HSA-350562 NCBI chr 1:35,599,541...35,641,526
Ensembl chr 1:35,599,541...35,641,526
JBrowse link
G PSMB3 proteasome 20S subunit beta 3 TAS Reactome Reactome:R-HSA-350562 NCBI chr17:38,752,741...38,764,225
Ensembl chr17:38,752,741...38,764,225
JBrowse link
G PSMB4 proteasome 20S subunit beta 4 TAS Reactome Reactome:R-HSA-350562 NCBI chr 1:151,399,573...151,401,937
Ensembl chr 1:151,399,560...151,401,937
JBrowse link
G PSMB5 proteasome 20S subunit beta 5 TAS Reactome Reactome:R-HSA-350562 NCBI chr14:23,025,851...23,035,220
Ensembl chr14:23,016,543...23,035,230
JBrowse link
G PSMB6 proteasome 20S subunit beta 6 TAS Reactome Reactome:R-HSA-350562 NCBI chr17:4,796,164...4,798,495
Ensembl chr17:4,796,144...4,798,502
JBrowse link
G PSMB7 proteasome 20S subunit beta 7 TAS Reactome Reactome:R-HSA-350562 NCBI chr 9:124,353,465...124,415,442
Ensembl chr 9:124,353,465...124,415,444
JBrowse link
G PSMB8 proteasome 20S subunit beta 8 TAS Reactome Reactome:R-HSA-350562 NCBI chr 6:32,840,717...32,844,679
Ensembl chr 6:32,840,717...32,844,679
JBrowse link
G PSMB9 proteasome 20S subunit beta 9 TAS Reactome Reactome:R-HSA-350562 NCBI chr 6:32,854,192...32,859,851
Ensembl chr 6:32,844,136...32,859,851
JBrowse link
G PSMC1 proteasome 26S subunit, ATPase 1 TAS Reactome Reactome:R-HSA-350562 NCBI chr14:90,256,553...90,275,429
Ensembl chr14:90,256,527...90,275,429
JBrowse link
G PSMC2 proteasome 26S subunit, ATPase 2 TAS Reactome Reactome:R-HSA-350562 NCBI chr 7:103,344,405...103,369,395
Ensembl chr 7:103,344,254...103,369,395
JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 TAS Reactome Reactome:R-HSA-350562 NCBI chr11:47,418,775...47,426,473
Ensembl chr11:47,418,769...47,426,473
JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 TAS Reactome Reactome:R-HSA-350562 NCBI chr19:39,971,150...39,981,764
Ensembl chr19:39,971,165...39,981,764
JBrowse link
G PSMC5 proteasome 26S subunit, ATPase 5 TAS Reactome Reactome:R-HSA-350562 NCBI chr17:63,827,431...63,832,019
Ensembl chr17:63,827,152...63,832,026
JBrowse link
G PSMC6 proteasome 26S subunit, ATPase 6 TAS Reactome Reactome:R-HSA-350562 NCBI chr14:52,707,163...52,728,590
Ensembl chr14:52,707,178...52,728,590
JBrowse link
G PSMD1 proteasome 26S subunit, non-ATPase 1 TAS Reactome Reactome:R-HSA-350562 NCBI chr 2:231,056,867...231,172,827
Ensembl chr 2:231,056,864...231,172,827
JBrowse link
G PSMD10 proteasome 26S subunit, non-ATPase 10 TAS Reactome Reactome:R-HSA-350562 NCBI chr  X:108,084,207...108,091,542
Ensembl chr  X:108,084,207...108,091,549
JBrowse link
G PSMD11 proteasome 26S subunit, non-ATPase 11 TAS Reactome Reactome:R-HSA-350562 NCBI chr17:32,444,510...32,483,319
Ensembl chr17:32,444,379...32,483,319
JBrowse link
G PSMD12 proteasome 26S subunit, non-ATPase 12 TAS Reactome Reactome:R-HSA-350562 NCBI chr17:67,337,916...67,366,598
Ensembl chr17:67,337,916...67,366,605
JBrowse link
G PSMD13 proteasome 26S subunit, non-ATPase 13 TAS Reactome Reactome:R-HSA-350562 NCBI chr11:236,972...252,984
Ensembl chr11:236,966...252,984
JBrowse link
G PSMD14 proteasome 26S subunit, non-ATPase 14 TAS Reactome Reactome:R-HSA-350562 NCBI chr 2:161,308,425...161,411,717
Ensembl chr 2:161,308,425...161,411,717
JBrowse link
G PSMD2 proteasome 26S subunit, non-ATPase 2 TAS Reactome Reactome:R-HSA-350562 NCBI chr 3:184,299,241...184,309,050
Ensembl chr 3:184,299,198...184,309,050
JBrowse link
G PSMD3 proteasome 26S subunit, non-ATPase 3 TAS Reactome Reactome:R-HSA-350562 NCBI chr17:39,980,807...39,997,959
Ensembl chr17:39,980,807...39,997,959
JBrowse link
G PSMD4 proteasome 26S subunit, non-ATPase 4 TAS Reactome Reactome:R-HSA-350562 NCBI chr 1:151,254,734...151,267,479
Ensembl chr 1:151,254,703...151,267,479
Ensembl chr 1:151,254,703...151,267,479
JBrowse link
G PSMD5 proteasome 26S subunit, non-ATPase 5 TAS Reactome Reactome:R-HSA-350562 NCBI chr 9:120,816,053...120,842,922
Ensembl chr 9:120,815,496...120,842,951
JBrowse link
G PSMD6 proteasome 26S subunit, non-ATPase 6 TAS Reactome Reactome:R-HSA-350562 NCBI chr 3:64,010,551...64,024,007
Ensembl chr 3:64,010,550...64,024,010
Ensembl chr 3:64,010,550...64,024,010
JBrowse link
G PSMD7 proteasome 26S subunit, non-ATPase 7 TAS Reactome Reactome:R-HSA-350562 NCBI chr16:74,296,814...74,306,288
Ensembl chr16:74,296,814...74,306,288
JBrowse link
G PSMD8 proteasome 26S subunit, non-ATPase 8 TAS Reactome Reactome:R-HSA-350562 NCBI chr19:38,374,571...38,383,824
Ensembl chr19:38,374,536...38,383,824
JBrowse link
G PSMD9 proteasome 26S subunit, non-ATPase 9 TAS Reactome Reactome:R-HSA-350562 NCBI chr12:121,888,790...121,918,297
Ensembl chr12:121,888,809...121,921,470
Ensembl chr12:121,888,809...121,921,470
JBrowse link
G PSME1 proteasome activator subunit 1 TAS Reactome Reactome:R-HSA-350562 NCBI chr14:24,136,194...24,138,962
Ensembl chr14:24,136,163...24,138,967
JBrowse link
G PSME2 proteasome activator subunit 2 TAS Reactome Reactome:R-HSA-350562 NCBI chr14:24,143,365...24,146,646
Ensembl chr14:24,143,362...24,147,570
JBrowse link
G PSME3 proteasome activator subunit 3 TAS Reactome Reactome:R-HSA-350562 NCBI chr17:42,833,397...42,843,760
Ensembl chr17:42,824,385...42,843,760
JBrowse link
G PSME4 proteasome activator subunit 4 TAS Reactome Reactome:R-HSA-350562 NCBI chr 2:53,864,069...53,970,993
Ensembl chr 2:53,864,069...53,970,993
JBrowse link
G PSMF1 proteasome inhibitor subunit 1 TAS Reactome Reactome:R-HSA-350562 NCBI chr20:1,113,263...1,172,246
Ensembl chr20:1,113,240...1,189,415
JBrowse link
G SEM1 SEM1 26S proteasome complex subunit TAS Reactome Reactome:R-HSA-350562 NCBI chr 7:96,481,626...96,709,846
Ensembl chr 7:96,481,626...96,709,891
JBrowse link
regulation of cysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC7A11 solute carrier family 7 member 11 IEA Ensembl GO_REF:0000107 NCBI chr 4:138,164,097...138,242,349
Ensembl chr 4:138,164,097...138,242,349
JBrowse link
regulation of dopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRNB2 cholinergic receptor nicotinic beta 2 subunit ISS UniProtKB GO_REF:0000024 NCBI chr 1:154,567,778...154,584,708
Ensembl chr 1:154,567,778...154,580,013
JBrowse link
G DRD1 dopamine receptor D1 IEA Ensembl GO_REF:0000107 NCBI chr 5:175,440,036...175,444,182
Ensembl chr 5:175,440,036...175,444,182
JBrowse link
G DRD4 dopamine receptor D4 ISS BHF-UCL GO_REF:0000024 NCBI chr11:637,269...640,706
Ensembl chr11:637,269...640,706
JBrowse link
G HTR1A 5-hydroxytryptamine receptor 1A ISS UniProtKB GO_REF:0000024 NCBI chr 5:63,957,874...63,962,445
Ensembl chr 5:63,960,356...63,962,507
Ensembl chr 5:63,960,356...63,962,507
JBrowse link
G NR4A2 nuclear receptor subfamily 4 group A member 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:156,324,432...156,332,724
Ensembl chr 2:156,324,437...156,342,348
JBrowse link
G PDE1B phosphodiesterase 1B IEA Ensembl GO_REF:0000107 NCBI chr12:54,549,601...54,579,239
Ensembl chr12:54,549,601...54,579,239
JBrowse link
G PNKD PNKD metallo-beta-lactamase domain containing IEA Ensembl GO_REF:0000107 NCBI chr 2:218,270,485...218,346,793
Ensembl chr 2:218,270,392...218,346,793
JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase IMP (PMID:22314364) ParkinsonsUK-UCL PMID:22314364 NCBI chr 6:161,347,417...162,727,802
Ensembl chr 6:161,347,417...162,727,771
Ensembl chr 6:161,347,417...162,727,771
JBrowse link
G SLC6A3 solute carrier family 6 member 3 IEA Ensembl GO_REF:0000107 NCBI chr 5:1,392,794...1,445,440
Ensembl chr 5:1,392,794...1,445,440
JBrowse link
G TACR3 tachykinin receptor 3 IEA Ensembl GO_REF:0000107 NCBI chr 4:103,586,031...103,719,985
Ensembl chr 4:103,586,031...103,719,985
JBrowse link
regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APC APC regulator of WNT signaling pathway ISO RGD PMID:19858196 RGD:6484536 NCBI chr 5:112,707,498...112,846,239
Ensembl chr 5:112,707,498...112,846,239
JBrowse link
G SLC7A11 solute carrier family 7 member 11 IEA Ensembl GO_REF:0000107 NCBI chr 4:138,164,097...138,242,349
Ensembl chr 4:138,164,097...138,242,349
JBrowse link
regulation of glutamine family amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIRT4 sirtuin 4 IEA Ensembl GO_REF:0000107 NCBI chr12:120,291,780...120,313,249
Ensembl chr12:120,302,316...120,313,249
JBrowse link
regulation of homocysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHMT betaine--homocysteine S-methyltransferase NAS (PMID:10075673) UniProtKB PMID:10075673 NCBI chr 5:79,111,809...79,132,288
Ensembl chr 5:79,111,809...79,132,288
JBrowse link
serotonin biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP2D6 cytochrome P450 family 2 subfamily D member 6 ISO RGD PMID:23098818 RGD:11353778 NCBI chr22:42,126,499...42,130,810
Ensembl chr22:42,126,499...42,130,881
JBrowse link
spermidine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SAT1 spermidine/spermine N1-acetyltransferase 1 IBA
IDA
(PMID:21873635)
(PMID:15283699)
GO_Central
UniProt
PMID:15283699, PMID:21873635 NCBI chr  X:23,783,158...23,786,223
Ensembl chr  X:23,783,173...23,786,226
JBrowse link
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 NOT IDA
IBA
(PMID:12803540)
(PMID:15283699)
(PMID:21873635)
UniProtKB
UniProt
GO_Central
PMID:12803540, PMID:15283699, PMID:21873635 NCBI chr17:7,626,234...7,627,878
Ensembl chr17:7,626,234...7,627,876
JBrowse link
spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGMAT agmatinase IEA UniProt GO_REF:0000043 NCBI chr 1:15,571,699...15,585,051
Ensembl chr 1:15,571,699...15,585,051
JBrowse link
G AMD1 adenosylmethionine decarboxylase 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
UniProt
PMID:21873635 GO_REF:0000002, GO_REF:0000043 NCBI chr 6:110,814,617...110,895,713
Ensembl chr 6:110,874,770...110,898,879
JBrowse link
G SRM spermidine synthase IDA
IBA
IEA
(PMID:17585781)
(PMID:21873635)
UniProtKB
GO_Central
PMID:17585781, PMID:21873635 GO_REF:0000041 NCBI chr 1:11,054,589...11,060,053
Ensembl chr 1:11,054,584...11,060,020
JBrowse link
spermidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHPS deoxyhypusine synthase IEA Ensembl GO_REF:0000107 NCBI chr19:12,672,470...12,681,880
Ensembl chr19:12,675,717...12,681,880
JBrowse link
G PAOX polyamine oxidase IDA (PMID:16354669) UniProtKB PMID:16354669 NCBI chr10:133,379,262...133,391,694
Ensembl chr10:133,380,017...133,420,271
Ensembl chr10:133,380,017...133,420,271
JBrowse link
spermidine deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC10 histone deacetylase 10 IDA (PMID:28516954) UniProt PMID:28516954 NCBI chr22:50,245,183...50,251,265
Ensembl chr22:50,245,183...50,251,405
JBrowse link
G HDAC6 histone deacetylase 6 NOT IDA (PMID:28516954) UniProt PMID:28516954 NCBI chr  X:48,801,398...48,824,982
Ensembl chr  X:48,801,377...48,824,982
JBrowse link
spermidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHPS deoxyhypusine synthase IDA (PMID:23525104) UniProtKB PMID:23525104 NCBI chr19:12,672,470...12,681,880
Ensembl chr19:12,675,717...12,681,880
JBrowse link
spermine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 IDA (PMID:12803540) UniProtKB PMID:12803540 NCBI chr17:7,626,234...7,627,878
Ensembl chr17:7,626,234...7,627,876
JBrowse link
spermine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 6:110,814,617...110,895,713
Ensembl chr 6:110,874,770...110,898,879
JBrowse link
G SMS spermine synthase IEA
IBA
(PMID:21873635) InterPro
GO_Central
UniProtKB
PMID:21873635 GO_REF:0000002, GO_REF:0000041 NCBI chr  X:21,940,709...21,994,837
Ensembl chr  X:21,940,709...21,994,837
JBrowse link
spermine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAOX polyamine oxidase IDA (PMID:16354669) UniProtKB PMID:16354669 NCBI chr10:133,379,262...133,391,694
Ensembl chr10:133,380,017...133,420,271
Ensembl chr10:133,380,017...133,420,271
JBrowse link
G SMOX spermine oxidase IEA
IDA
(PMID:18422650) UniProtKB PMID:18422650 GO_REF:0000041 NCBI chr20:4,148,828...4,187,732
Ensembl chr20:4,120,980...4,187,747
JBrowse link
spermine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMS spermine synthase ISO (MGI:1197776|PMID:9467015) MGI PMID:9467015 MGI:1197776 NCBI chr  X:21,940,709...21,994,837
Ensembl chr  X:21,940,709...21,994,837
JBrowse link
tryptophan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AADAT aminoadipate aminotransferase TAS Reactome Reactome:R-HSA-71240 NCBI chr 4:170,060,222...170,091,699
Ensembl chr 4:170,060,222...170,091,699
JBrowse link
G ACMSD aminocarboxymuconate semialdehyde decarboxylase TAS (PMID:12140278), (PMID:19843166) ParkinsonsUK-UCL PMID:12140278, PMID:19843166 NCBI chr 2:134,838,319...134,902,906
Ensembl chr 2:134,838,616...134,902,034
JBrowse link
G HAAO 3-hydroxyanthranilate 3,4-dioxygenase TAS Reactome Reactome:R-HSA-71240 NCBI chr 2:42,767,087...42,801,002
Ensembl chr 2:42,767,089...42,792,593
JBrowse link
G IDO1 indoleamine 2,3-dioxygenase 1 TAS Reactome Reactome:R-HSA-71240 NCBI chr 8:39,913,891...39,928,790
Ensembl chr 8:39,902,275...39,928,790
JBrowse link
G IDO2 indoleamine 2,3-dioxygenase 2 TAS Reactome Reactome:R-HSA-71240 NCBI chr 8:39,934,955...40,016,391
Ensembl chr 8:39,934,614...40,016,391
JBrowse link
G KMO kynurenine 3-monooxygenase TAS Reactome Reactome:R-HSA-71240 NCBI chr 1:241,531,883...241,595,642
Ensembl chr 1:241,532,134...241,595,642
JBrowse link
G KYAT1 kynurenine aminotransferase 1 TAS Reactome Reactome:R-HSA-71240 NCBI chr 9:128,832,942...128,882,523
Ensembl chr 9:128,819,663...128,881,931
Ensembl chr 9:128,819,663...128,881,931
JBrowse link
G KYNU kynureninase IEA
IMP
TAS
(PMID:17334708) InterPro
UniProtKB
Reactome
PMID:17334708 GO_REF:0000002, Reactome:R-HSA-71240 NCBI chr 2:142,877,664...143,055,833
Ensembl chr 2:142,877,657...143,055,833
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase TAS Reactome Reactome:R-HSA-71240 NCBI chr 4:155,903,696...155,920,406
Ensembl chr 4:155,854,738...155,920,406
JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KYNU kynureninase IEA Ensembl GO_REF:0000107 NCBI chr 2:142,877,664...143,055,833
Ensembl chr 2:142,877,657...143,055,833
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:155,903,696...155,920,406
Ensembl chr 4:155,854,738...155,920,406
JBrowse link
tryptophan catabolic process to kynurenine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFMID arylformamidase IEA
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000041 NCBI chr17:78,185,102...78,207,702
Ensembl chr17:78,187,317...78,207,701
JBrowse link
G IDO1 indoleamine 2,3-dioxygenase 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
UniProtKB
PMID:21873635 GO_REF:0000002, GO_REF:0000041 NCBI chr 8:39,913,891...39,928,790
Ensembl chr 8:39,902,275...39,928,790
JBrowse link
G IDO2 indoleamine 2,3-dioxygenase 2 IEA
IBA
ISS
IDA
(PMID:21873635)
(PMID:17499941)
(PMID:17671174)
InterPro
GO_Central
UniProtKB
PMID:17499941, PMID:17671174, PMID:21873635 GO_REF:0000002, GO_REF:0000041 NCBI chr 8:39,934,955...40,016,391
Ensembl chr 8:39,934,614...40,016,391
JBrowse link
G KYNU kynureninase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:142,877,664...143,055,833
Ensembl chr 2:142,877,657...143,055,833
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase IEA
IDA
(PMID:27762317) InterPro
UniProtKB
PMID:27762317 GO_REF:0000002, GO_REF:0000041 NCBI chr 4:155,903,696...155,920,406
Ensembl chr 4:155,854,738...155,920,406
JBrowse link
tryptophan metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha ISS UniProtKB GO_REF:0000024 NCBI chr  X:77,910,693...78,050,395
Ensembl chr  X:77,910,656...78,050,395
JBrowse link
G GCDH glutaryl-CoA dehydrogenase IEA UniProtKB GO_REF:0000041 NCBI chr19:12,891,129...12,899,999
Ensembl chr19:12,891,160...12,914,207
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase ISO RGD PMID:3400092, PMID:3899109, PMID:10719243 RGD:2290190, RGD:2290313, RGD:2291804 NCBI chr 4:155,903,696...155,920,406
Ensembl chr 4:155,854,738...155,920,406
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18672
    metabolic process 12302
      organic substance metabolic process 11734
        organonitrogen compound metabolic process 7150
          amine metabolic process 184
            2-aminobenzenesulfonate metabolic process + 0
            amine biosynthetic process + 49
            amine catabolic process + 33
            cellular amine metabolic process + 179
            cytokinin metabolic process + 0
            methane biosynthetic process from dimethylamine + 0
            methane biosynthetic process from trimethylamine + 0
            methylamine metabolic process + 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.