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ONTOLOGY REPORT - ANNOTATIONS


Term:oligosaccharide biosynthetic process
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Accession:GO:0009312 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages.
Synonyms:exact_synonym: oligosaccharide anabolism;   oligosaccharide biosynthesis;   oligosaccharide formation;   oligosaccharide synthesis


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oligosaccharide biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) IEA Ensembl GO_REF:0000107 NCBI chr 3:161,083,883...161,105,469
Ensembl chr 3:161,083,883...161,105,411
JBrowse link
G B3GALT1 beta-1,3-galactosyltransferase 1 IDA (PMID:9582303) UniProtKB PMID:9582303 NCBI chr 2:167,293,001...167,874,045
Ensembl chr 2:167,868,948...167,874,041
JBrowse link
G B3GALT2 beta-1,3-galactosyltransferase 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:193,178,730...193,186,613
Ensembl chr 1:193,178,730...193,186,613
JBrowse link
G B4GALT1 beta-1,4-galactosyltransferase 1 NAS
IDA
(PMID:7540104)
(PMID:2120039)
UniProtKB PMID:2120039, PMID:7540104 NCBI chr 9:33,104,077...33,167,336
Ensembl chr 9:33,104,082...33,167,356
JBrowse link
G FUT3 fucosyltransferase 3 (Lewis blood group) IDA (PMID:1977660) BHF-UCL PMID:1977660 NCBI chr19:5,842,888...5,857,122
Ensembl chr19:5,842,888...5,851,474
JBrowse link
G FUT8 fucosyltransferase 8 TAS (PMID:9133635) PINC PMID:9133635 NCBI chr14:65,410,592...65,744,122
Ensembl chr14:65,410,592...65,744,121
JBrowse link
G MGAT2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase IEA InterPro GO_REF:0000002 NCBI chr14:49,620,799...49,623,481
Ensembl chr14:49,620,799...49,623,481
JBrowse link
G MPDU1 mannose-P-dolichol utilization defect 1 IDA
IBA
IGI
(PMID:11179430)
(PMID:21873635)
(PMID:11733564)
UniProtKB
GO_Central
PMID:11179430, PMID:11733564, PMID:21873635 NCBI chr17:7,583,647...7,588,212
Ensembl chr17:7,583,529...7,592,789
JBrowse link
G ST3GAL2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 IDA (PMID:9266697) BHF-UCL PMID:9266697 NCBI chr16:70,375,977...70,439,100
Ensembl chr16:70,375,977...70,439,237
JBrowse link
G ST3GAL4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 IDA (PMID:8288606) BHF-UCL PMID:8288606 NCBI chr11:126,355,686...126,414,638
Ensembl chr11:126,355,640...126,440,344
JBrowse link
G ST6GALNAC1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr17:76,617,769...76,643,758
Ensembl chr17:76,624,761...76,643,786
JBrowse link
G ST6GALNAC5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 ISS (PMID:12668675) BHF-UCL PMID:12668675 NCBI chr 1:76,867,449...77,069,167
Ensembl chr 1:76,867,480...77,067,546
JBrowse link
G ST6GALNAC6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 ISS (PMID:12668675) BHF-UCL PMID:12668675 NCBI chr 9:127,885,321...127,906,764
Ensembl chr 9:127,867,850...127,906,022
Ensembl chr 9:127,867,850...127,906,022
JBrowse link
lactose biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4GALT1 beta-1,4-galactosyltransferase 1 TAS Reactome Reactome:R-HSA-5653890 NCBI chr 9:33,104,077...33,167,336
Ensembl chr 9:33,104,082...33,167,356
JBrowse link
G LALBA lactalbumin alpha TAS
IEA
Reactome
UniProt
GO_REF:0000043, Reactome:R-HSA-5653890 NCBI chr12:48,567,684...48,571,845
Ensembl chr12:48,567,684...48,570,066
JBrowse link
G SLC2A1 solute carrier family 2 member 1 TAS Reactome Reactome:R-HSA-5653890 NCBI chr 1:42,925,353...42,958,868
Ensembl chr 1:42,925,353...42,958,893
Ensembl chr 1:42,925,353...42,958,893
JBrowse link
sucrose biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBP1 fructose-bisphosphatase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:94,603,133...94,640,263
Ensembl chr 9:94,603,133...94,640,249
JBrowse link
G FBP2 fructose-bisphosphatase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:94,558,720...94,593,824
Ensembl chr 9:94,558,720...94,593,824
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18626
    metabolic process 12276
      primary metabolic process 10988
        carbohydrate metabolic process 687
          oligosaccharide metabolic process 54
            oligosaccharide biosynthetic process 17
              6-alpha-maltosylglucose biosynthetic process 0
              disaccharide biosynthetic process + 5
              lipooligosaccharide biosynthetic process + 0
              lipopolysaccharide core region biosynthetic process 0
              raffinose family oligosaccharide biosynthetic process + 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.