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ONTOLOGY REPORT - ANNOTATIONS


Term:oligosaccharide biosynthetic process
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Accession:GO:0009312 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages.
Synonyms:exact_synonym: oligosaccharide anabolism;   oligosaccharide biosynthesis;   oligosaccharide formation;   oligosaccharide synthesis


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oligosaccharide biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3galnt1 UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1 IDA (MGI:MGI:1101659|PMID:9417047) MGI PMID:9417047 MGI:MGI:1101659 NCBI chr 3:69,573,919...69,598,960
Ensembl chr 3:69,574,158...69,598,960
JBrowse link
G B3galt1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 IDA
ISO
(MGI:MGI:1101659|PMID:9417047) MGI PMID:9417047 GO_REF:0000096, MGI:MGI:1101659, MGI:MGI:4834177 NCBI chr 2:67,565,689...68,122,882
Ensembl chr 2:67,565,871...68,122,689
JBrowse link
G B3galt2 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 IDA (MGI:MGI:1101659|PMID:9417047) MGI PMID:9417047 MGI:MGI:1101659 NCBI chr 1:143,640,697...143,649,937
Ensembl chr 1:143,640,664...143,654,614
JBrowse link
G B4galt1 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 IDA
ISO
(MGI:MGI:1290117|PMID:9813328) MGI PMID:9813328 GO_REF:0000096, MGI:MGI:1290117, MGI:MGI:4834177 NCBI chr 4:40,804,602...40,853,984
Ensembl chr 4:40,804,602...40,854,005
JBrowse link
G Mgat2 mannoside acetylglucosaminyltransferase 2 IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr12:69,184,158...69,186,773
Ensembl chr12:69,184,157...69,186,770
JBrowse link
G Mpdu1 mannose-P-dolichol utilization defect 1 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr11:69,656,697...69,662,649
Ensembl chr11:69,656,697...69,662,642
JBrowse link
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 8:110,919,743...110,974,058
Ensembl chr 8:110,919,922...110,972,480
JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 9:35,046,576...35,116,864
Ensembl chr 9:35,046,576...35,119,268
JBrowse link
G St6galnac1 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 IDA (MGI:MGI:2153262|PMID:10788794) MGI PMID:10788794 MGI:MGI:2153262 NCBI chr11:116,765,025...116,775,507
Ensembl chr11:116,765,025...116,775,507
JBrowse link
G St6galnac5 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 IDA (MGI:MGI:5284811|PMID:12668675) BHF-UCL PMID:12668675 MGI:MGI:5284811 NCBI chr 3:152,819,885...152,982,210
Ensembl chr 3:152,817,081...152,982,246
JBrowse link
G St6galnac6 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 IDA (MGI:MGI:5284811|PMID:12668675) BHF-UCL PMID:12668675 MGI:MGI:5284811 NCBI chr 2:32,599,709...32,620,809
Ensembl chr 2:32,599,709...32,620,806
JBrowse link
lactose biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt1 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 IMP (MGI:MGI:87365|PMID:9155011) MGI PMID:9155011 MGI:MGI:87365 NCBI chr 4:40,804,602...40,853,984
Ensembl chr 4:40,804,602...40,854,005
JBrowse link
G Lalba lactalbumin, alpha IEA UniProtKB GO_REF:0000002, GO_REF:0000004, MGI:MGI:1354194, MGI:MGI:2152098 NCBI chr15:98,480,400...98,482,934
Ensembl chr15:98,480,400...98,482,721
JBrowse link
sucrose biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbp1 fructose bisphosphatase 1 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:62,864,753...62,888,298
Ensembl chr13:62,864,753...62,888,282
JBrowse link
G Fbp2 fructose bisphosphatase 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:62,836,884...62,858,400
Ensembl chr13:62,836,877...62,858,422
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23369
    metabolic process 11273
      primary metabolic process 9905
        carbohydrate metabolic process 579
          oligosaccharide metabolic process 39
            oligosaccharide biosynthetic process 14
              6-alpha-maltosylglucose biosynthetic process 0
              disaccharide biosynthetic process + 4
              lipooligosaccharide biosynthetic process + 0
              lipopolysaccharide core region biosynthetic process 0
              raffinose family oligosaccharide biosynthetic process + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.