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ONTOLOGY REPORT - ANNOTATIONS


Term:oligosaccharide biosynthetic process
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Accession:GO:0009312 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages.
Synonyms:exact_synonym: oligosaccharide anabolism;   oligosaccharide biosynthesis;   oligosaccharide formation;   oligosaccharide synthesis


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oligosaccharide biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3galnt1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) ISO (MGI:MGI:1101659|PMID:9417047) RGD PMID:9417047 MGI:MGI:1101659 NCBI chr 2:166,226,736...166,255,978
Ensembl chr 2:166,226,754...166,255,302
JBrowse link
G B3galt1 Beta-1,3-galactosyltransferase 1 ISO (MGI:MGI:1101659|PMID:9417047)
(PMID:9582303)
RGD PMID:9417047, PMID:9582303 MGI:MGI:1101659 NCBI chr 3:53,699,409...54,269,612
Ensembl chr 3:54,253,949...54,267,292
JBrowse link
G B3galt2 Beta-1,3-galactosyltransferase 2 ISO (MGI:MGI:1101659|PMID:9417047) RGD PMID:9417047 MGI:MGI:1101659 NCBI chr13:60,435,946...60,444,957
Ensembl chr13:60,435,946...60,444,957
JBrowse link
G B4galt1 beta-1,4-galactosyltransferase 1 TAS
ISO
(PMID:2120039)
(MGI:MGI:1290117|PMID:9813328)
RGD PMID:2120039, PMID:9813328, PMID:12098497 MGI:MGI:1290117, RGD:1302270 NCBI chr 5:57,121,768...57,168,610
Ensembl chr 5:57,121,769...57,168,610
JBrowse link
G Mgat2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:91,476,698...91,479,187
Ensembl chr 6:91,476,698...91,479,183
JBrowse link
G Mpdu1 mannose-P-dolichol utilization defect 1 ISO
IBA
UniProtKB:O75352 (PMID:11179430), (PMID:11733564)
PMID:21873635
RGD PMID:11179430, PMID:11733564, PMID:21873635 RGD:13792537 NCBI chr10:56,261,636...56,267,213
Ensembl chr10:56,261,637...56,267,213
JBrowse link
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 ISO
IEA
(PMID:9266697)
GO_REF:0000107
RGD
Ensembl
PMID:9266697 GO_REF:0000107 NCBI chr19:43,273,251...43,324,265
Ensembl chr19:43,274,493...43,290,363
JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 ISO (PMID:8288606) RGD PMID:8288606 NCBI chr 8:36,264,741...36,314,811
Ensembl chr 8:36,264,750...36,314,811
JBrowse link
G St6galnac1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 ISO (MGI:MGI:2153262|PMID:10788794) RGD PMID:10788794 MGI:MGI:2153262 NCBI chr10:105,713,305...105,723,700
Ensembl chr10:105,713,317...105,723,700
JBrowse link
G St6galnac5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 ISO (MGI:MGI:5284811|PMID:12668675) RGD PMID:12668675 MGI:MGI:5284811 NCBI chr 2:258,025,177...259,150,709
Ensembl chr 2:258,025,177...258,052,835
JBrowse link
G St6galnac6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 ISO (MGI:MGI:5284811|PMID:12668675) RGD PMID:12668675 MGI:MGI:5284811 NCBI chr 3:11,620,050...11,641,460
Ensembl chr 3:11,629,556...11,641,466
JBrowse link
lactose biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt1 beta-1,4-galactosyltransferase 1 ISO
IEA
MGI:MGI:2450889 (MGI:MGI:87365|PMID:9155011)
GO_REF:0000107
RGD
Ensembl
PMID:9155011 GO_REF:0000107, MGI:MGI:87365 NCBI chr 5:57,121,768...57,168,610
Ensembl chr 5:57,121,769...57,168,610
JBrowse link
G Lalba lactalbumin, alpha IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:140,088,420...140,096,347
Ensembl chr 7:140,088,421...140,090,922
JBrowse link
sucrose biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbp1 fructose-bisphosphatase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:396,175...417,480
Ensembl chr17:396,180...417,480
JBrowse link
G Fbp2 fructose-bisphosphatase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:372,554...389,918
Ensembl chr17:372,551...389,967
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      primary metabolic process 10901
        carbohydrate metabolic process 630
          oligosaccharide metabolic process 43
            oligosaccharide biosynthetic process 14
              6-alpha-maltosylglucose biosynthetic process 0
              disaccharide biosynthetic process + 4
              lipooligosaccharide biosynthetic process + 0
              lipopolysaccharide core region biosynthetic process 0
              raffinose family oligosaccharide biosynthetic process + 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.