ONTOLOGY REPORT - ANNOTATIONS


Term:response to cold
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Accession:GO:0009409 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
Synonyms:related_synonym: freezing tolerance
 xref: MIPS_funcat:32.01.06


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response to cold term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acadl acyl-CoA dehydrogenase, long chain JBrowse link 9 73,833,368 73,871,857 RGD:1624291
G Acadm acyl-CoA dehydrogenase medium chain JBrowse link 2 260,124,418 260,148,589 RGD:1624291
RGD:1600115
G Acadvl acyl-CoA dehydrogenase, very long chain JBrowse link 10 56,619,321 56,624,468 RGD:1624291
RGD:1600115
G Acot11 acyl-CoA thioesterase 11 JBrowse link 5 126,347,478 126,395,655 RGD:1624291
G Adm adrenomedullin JBrowse link 1 175,443,189 175,447,260 RGD:1625324
G Adrb1 adrenoceptor beta 1 JBrowse link 1 277,537,585 277,538,985 RGD:1600115
RGD:1624291
G Adrb2 adrenoceptor beta 2 JBrowse link 18 57,513,792 57,515,834 RGD:1600115
RGD:1624291
G Adrb3 adrenoceptor beta 3 JBrowse link 16 69,003,541 69,006,632 RGD:2313169
RGD:1624291
G Agt angiotensinogen JBrowse link 19 57,321,594 57,333,460 RGD:1624291
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 JBrowse link 7 41,114,606 41,223,138 RGD:2317731
G Casp12 caspase 12 JBrowse link 8 2,658,892 2,686,160 RGD:2311457
G Casp8 caspase 8 JBrowse link 9 65,614,142 65,662,624 RGD:2311437
G Cdh8 cadherin 8 JBrowse link 19 6,031,654 6,431,502 RGD:1624291
RGD:1600115
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit JBrowse link 1 123,897,341 124,039,263 RGD:1600115
RGD:1624291
G Cirbp cold inducible RNA binding protein JBrowse link 7 12,400,066 12,405,054 RGD:724747
RGD:13792537
G Cxcl10 C-X-C motif chemokine ligand 10 JBrowse link 14 17,210,733 17,212,930 RGD:2311385
G Dio2 iodothyronine deiodinase 2 JBrowse link 6 114,475,156 114,489,443 RGD:628323
G Fos Fos proto-oncogene, AP-1 transcription factor subunit JBrowse link 6 109,300,433 109,303,299 RGD:2293774
G Fosl2 FOS like 2, AP-1 transcription factor subunit JBrowse link 6 25,598,936 25,616,995 RGD:2293774
G Gk glycerol kinase JBrowse link X 54,227,291 54,303,897 RGD:2302184
G Gmpr guanosine monophosphate reductase JBrowse link 17 19,543,274 19,580,929 RGD:70748
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 JBrowse link 6 135,107,262 135,112,793 RGD:1600115
G Hspa2 heat shock protein family A (Hsp70) member 2 JBrowse link 6 99,433,575 99,436,288 RGD:1600115
G Hspd1 heat shock protein family D (Hsp60) member 1 JBrowse link 9 61,680,529 61,691,202 RGD:1600115
G Il18 interleukin 18 JBrowse link 8 55,009,666 55,016,286 RGD:69858
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:2306923
G Immt inner membrane mitochondrial protein JBrowse link 4 99,753,446 99,789,921 RGD:1627621
G Impdh1 inosine monophosphate dehydrogenase 1 JBrowse link 4 56,478,383 56,493,987 RGD:5144140
G LOC100909612 mitochondrial brown fat uncoupling protein 1-like JBrowse link 19 29,395,702 29,400,389 RGD:13792537
G LOC100910270 uncharacterized LOC100910270 JBrowse link 14 7,505,912 7,514,158 RGD:1600115
G LOC103690091 proSAAS JBrowse link X 15,324,261 15,328,617 RGD:1624291
G LOC103692716 heat shock protein HSP 90-alpha JBrowse link 6 135,044,833 135,050,417 RGD:1600115
G Lpl lipoprotein lipase JBrowse link 16 22,537,687 22,561,487 RGD:7241069
G Lrp11 LDL receptor related protein 11 JBrowse link 1 1,702,696 1,731,210 RGD:1624291
G Metrnl meteorin-like, glial cell differentiation regulator JBrowse link 10 110,893,261 110,907,256 RGD:1624291
RGD:1600115
G Mt-co2 mitochondrially encoded cytochrome c oxidase II JBrowse link MT 7,006 7,689 RGD:2302299
G P2rx3 purinergic receptor P2X 3 JBrowse link 3 72,403,992 72,447,801 RGD:1624291
RGD:1600115
G Plac8 placenta associated 8 JBrowse link 14 10,692,799 10,714,556 RGD:1624291
RGD:1600115
G Pmch pro-melanin-concentrating hormone JBrowse link 7 28,655,206 28,656,522 RGD:1642490
G Pnmt phenylethanolamine-N-methyltransferase JBrowse link 10 86,340,893 86,342,501 RGD:5130210
G Pparg peroxisome proliferator-activated receptor gamma JBrowse link 4 147,274,055 147,399,383 RGD:727277
G Ppargc1a PPARG coactivator 1 alpha JBrowse link 14 63,095,291 63,190,688 RGD:7242022
G Rbm3 RNA binding motif protein 3 JBrowse link X 15,098,880 15,102,344 RGD:1624291
RGD:13792537
G Rgs7 regulator of G-protein signaling 7 JBrowse link 13 93,095,659 93,534,452 RGD:13524837
G Slc25a27 solute carrier family 25, member 27 JBrowse link 9 19,880,468 19,907,506 RGD:13792537
G Slc27a1 solute carrier family 27 member 1 JBrowse link 16 19,997,823 20,016,193 RGD:1624291
RGD:13792537
RGD:1600115
G Sod2 superoxide dismutase 2 JBrowse link 1 47,914,757 47,921,587 RGD:2317380
G Tgfb2 transforming growth factor, beta 2 JBrowse link 13 105,039,639 105,142,010 RGD:1641989
G Thra thyroid hormone receptor alpha JBrowse link 10 86,657,285 86,684,935 RGD:1624291
RGD:1600115
G Tmem135 transmembrane protein 135 JBrowse link 1 152,886,496 153,096,225 RGD:1624291
RGD:1600115
G Trh thyrotropin releasing hormone JBrowse link 4 124,110,716 124,113,242 RGD:1600416
G Trpa1 transient receptor potential cation channel, subfamily A, member 1 JBrowse link 5 3,783,247 3,836,485 RGD:1600115
RGD:1624291
G Trpm8 transient receptor potential cation channel, subfamily M, member 8 JBrowse link 9 95,393,370 95,484,528 RGD:632416
RGD:1624291
G Ucp1 uncoupling protein 1 JBrowse link 19 24,456,976 24,464,808 RGD:13792537
G Ucp2 uncoupling protein 2 JBrowse link 1 165,506,375 165,512,744 RGD:13792537
G Ucp3 uncoupling protein 3 JBrowse link 1 165,482,912 165,495,895 RGD:2313537
RGD:13792537
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:2314329
G Vgf VGF nerve growth factor inducible JBrowse link 12 22,677,302 22,680,630 RGD:1624291
G Zfp516 zinc finger protein 516 JBrowse link 18 79,768,387 79,857,909 RGD:1624291
RGD:1600115
cellular response to cold term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cirbp cold inducible RNA binding protein JBrowse link 7 12,400,066 12,405,054 RGD:1624291
RGD:1600115
G Dnajc3 DnaJ heat shock protein family (Hsp40) member C3 JBrowse link 15 104,186,918 104,226,236 RGD:1624291
RGD:1600115
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 JBrowse link 4 98,648,513 98,709,695 RGD:1624291
RGD:1600115
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 JBrowse link 3 110,159,624 110,245,382 RGD:1624291
RGD:1600115
G Nfe2l1 nuclear factor, erythroid 2-like 1 JBrowse link 10 84,686,762 84,699,313 RGD:1600115
RGD:1624291
G Rnf34 ring finger protein 34 JBrowse link 12 39,164,290 39,185,209 RGD:1624291
RGD:1600115
G Saxo1 stabilizer of axonemal microtubules 1 JBrowse link 5 104,771,081 104,921,001 RGD:1624291
G Saxol1 stabilizer of axonemal microtubules like 1 JBrowse link X 29,520,263 29,522,420 RGD:1600115
G Slc9a1 solute carrier family 9 member A1 JBrowse link 5 151,573,122 151,626,360 RGD:1625557
G Trpa1 transient receptor potential cation channel, subfamily A, member 1 JBrowse link 5 3,783,247 3,836,485 RGD:10043615
G Vwf von Willebrand factor JBrowse link 4 158,085,059 158,219,525 RGD:11079231
cellular response to freezing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abraxas2 abraxas 2, BRISC complex subunit JBrowse link 1 204,861,768 204,887,344 RGD:1624291
cold acclimation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 JBrowse link 7 26,256,179 26,306,128 RGD:1600115
RGD:1624291
G Atp5f1b ATP synthase F1 subunit beta JBrowse link 7 2,504,708 2,511,748 RGD:13799276
G Atp5mc1 ATP synthase membrane subunit c locus 1 JBrowse link 10 83,895,941 83,898,640 RGD:13799276
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 2 54,857,688 54,893,404 RGD:6484546
G Saxo1 stabilizer of axonemal microtubules 1 JBrowse link 5 104,771,081 104,921,001 RGD:1624291
G Saxol1 stabilizer of axonemal microtubules like 1 JBrowse link X 29,520,263 29,522,420 RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17928
    response to stimulus 9811
      response to stress 3718
        response to cold 73
          cellular response to cold + 12
          cold acclimation 6
          response to freezing + 1
          vernalization response + 0
Path 2
Term Annotations click to browse term
  biological_process 17928
    response to stimulus 9811
      response to abiotic stimulus 1473
        response to temperature stimulus 236
          response to cold 73
            cellular response to cold + 12
            cold acclimation 6
            response to freezing + 1
            vernalization response + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.