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ONTOLOGY REPORT - ANNOTATIONS


Term:response to light stimulus
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Accession:GO:0009416 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.


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response to light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase ISO RGD PMID:18001324 RGD:2301033 NCBI chrNW_004955506:5,828,666...5,834,812
Ensembl chrNW_004955506:5,828,659...5,834,812
JBrowse link
G Bdnf brain derived neurotrophic factor ISO RGD PMID:17640634 RGD:8655603 NCBI chrNW_004955476:6,773,244...6,822,201
Ensembl chrNW_004955476:6,772,088...6,822,588
JBrowse link
G Bhlhe40 basic helix-loop-helix family member e40 ISO PMID:12397359
(PMID:15038852)
UniProt
BHF-UCL
PMID:12397359, PMID:15038852 RGD:625726 NCBI chrNW_004955421:8,463,337...8,468,877
Ensembl chrNW_004955421:8,463,018...8,468,877
JBrowse link
G Clock clock circadian regulator ISO RGD PMID:10471199 RGD:10401879 NCBI chrNW_004955447:15,394,496...15,537,969
Ensembl chrNW_004955447:15,454,630...15,530,906
JBrowse link
G Clu clusterin ISO RGD PMID:11803476 RGD:9062370 NCBI chrNW_004955403:50,160,598...50,175,876
Ensembl chrNW_004955403:50,160,598...50,175,876
JBrowse link
G Cry1 cryptochrome circadian regulator 1 ISO (MGI:6294193|PMID:29561690) UniProt PMID:29561690 MGI:6294193 NCBI chrNW_004955405:40,878,227...40,941,664
Ensembl chrNW_004955405:40,874,322...40,941,664
JBrowse link
G Cry2 cryptochrome circadian regulator 2 ISO (PMID:15751956)
(MGI:6294193|PMID:29561690)
CAFA
UniProt
PMID:15751956, PMID:29561690 MGI:6294193 NCBI chrNW_004955422:2,084,020...2,114,980
Ensembl chrNW_004955422:2,083,138...2,115,072
JBrowse link
G Dnm2 dynamin 2 ISO RGD PMID:22666495 RGD:9685159 NCBI chrNW_004955495:1,860,644...1,934,589
Ensembl chrNW_004955495:1,860,644...1,934,818
JBrowse link
G Drd2 dopamine receptor D2 ISO (MGI:3639799|PMID:16715079) MGI PMID:16715079 MGI:3639799 NCBI chrNW_004955412:15,054,255...15,114,558
Ensembl chrNW_004955412:15,054,038...15,114,573
JBrowse link
G Dusp1 dual specificity phosphatase 1 ISO RGD PMID:15527789 RGD:2298681 NCBI chrNW_004955408:25,481,294...25,484,381
Ensembl chrNW_004955408:25,481,294...25,484,381
JBrowse link
G Dynlrb1 dynein light chain roadblock-type 1 ISO RGD PMID:10816553 RGD:633064 NCBI chrNW_004955422:26,787,879...26,807,901
Ensembl chrNW_004955422:26,787,699...26,807,901
JBrowse link
G Elk1 ETS transcription factor ELK1 ISO RGD PMID:10383826 RGD:7488912 NCBI chrNW_004955516:431,081...444,871
Ensembl chrNW_004955516:430,775...444,871
JBrowse link
G Fech ferrochelatase ISO (MGI:50545|PMID:1939658) MGI PMID:1939658 MGI:50545 NCBI chrNW_004955402:41,902,868...41,938,099
Ensembl chrNW_004955402:41,902,868...41,938,174
JBrowse link
G Fmr1 FMRP translational regulator 1 ISO RGD PMID:15564573 RGD:1601175 NCBI chrNW_004955498:566,741...594,837
Ensembl chrNW_004955498:566,688...595,360
JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:11146118 RGD:2293791 NCBI chrNW_004955523:307,181...310,728
Ensembl chrNW_004955523:305,728...310,728
JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit ISO RGD PMID:11146118 RGD:2293791 NCBI chrNW_004955469:10,297,179...10,319,180
Ensembl chrNW_004955469:10,297,179...10,319,180
JBrowse link
G Gja10 gap junction protein alpha 10 ISO (MGI:3654563|PMID:16820008) MGI PMID:16820008 MGI:3654563 NCBI chrNW_004955411:16,586,673...16,601,999
Ensembl chrNW_004955411:16,593,576...16,595,042
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A ISO RGD PMID:19850826 RGD:2325946 NCBI chrNW_004955442:8,171,114...8,565,187
Ensembl chrNW_004955442:8,174,232...8,562,059
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 ISO (MGI:1334014|PMID:10097103) RGD
MGI
PMID:3950623, PMID:10097103 MGI:1334014, RGD:1600007 NCBI chrNW_004955404:343,009...353,683
Ensembl chrNW_004955404:343,009...353,683
JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:11146118 RGD:2293791 NCBI chrNW_004955415:31,876,508...31,878,289
Ensembl chrNW_004955415:31,876,793...31,877,836
JBrowse link
G Jund JunD proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:11146118 RGD:2293791 NCBI chrNW_004955524:3,176,849...3,177,936 JBrowse link
G Kmt2a lysine methyltransferase 2A ISO (MGI:5638946|PMID:25834037) MGI PMID:25834037 MGI:5638946 NCBI chrNW_004955412:19,586,435...19,670,149 JBrowse link
G Mapk10 mitogen-activated protein kinase 10 ISO (MGI:5431019|PMID:22441692) UniProt PMID:22441692 MGI:5431019 NCBI chrNW_004955474:3,451,656...3,772,405
Ensembl chrNW_004955474:3,624,679...3,772,458
JBrowse link
G Mat2a methionine adenosyltransferase 2A ISO RGD PMID:15504733 RGD:1598692 NCBI chrNW_004955424:1,953,623...1,961,164
Ensembl chrNW_004955424:1,953,623...1,961,164
JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 ISO RGD PMID:17640634 RGD:8655603 NCBI chrNW_004955432:2,284,283...2,629,631
Ensembl chrNW_004955432:2,288,898...2,630,878
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase ISO RGD PMID:15979612 RGD:8694099 NCBI chrNW_004955561:1,277,362...1,282,949
Ensembl chrNW_004955561:1,277,365...1,282,793
JBrowse link
G Opn4 opsin 4 NOT ISO (MGI:5925970|PMID:26320947) MGI PMID:26320947 MGI:5925970 NCBI chrNW_004955510:5,723,804...5,736,070
Ensembl chrNW_004955510:5,724,120...5,736,135
JBrowse link
G Per1 period circadian regulator 1 ISO (PMID:15038852) BHF-UCL PMID:15038852 NCBI chrNW_004955467:8,798,436...8,813,369
Ensembl chrNW_004955467:8,797,912...8,813,365
JBrowse link
G Polg DNA polymerase gamma, catalytic subunit ISO RGD PMID:15979612 RGD:8694099 NCBI chrNW_004955416:15,773,005...15,788,736
Ensembl chrNW_004955416:15,773,473...15,788,651
JBrowse link
G Pparg peroxisome proliferator activated receptor gamma ISO (MGI:3830801|PMID:19041764) UniProt PMID:19041764 MGI:3830801 NCBI chrNW_004955429:14,814,690...14,936,869
Ensembl chrNW_004955429:14,873,908...14,937,387
JBrowse link
G Rho rhodopsin ISO (MGI:3655007|PMID:16723493) MGI PMID:16723493 MGI:3655007 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982
JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A ISO (MGI:3692154|PMID:16221497) MGI PMID:16221497 MGI:3692154 NCBI chrNW_004955476:11,827,004...11,833,495
Ensembl chrNW_004955476:11,827,004...11,833,162
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO RGD PMID:17389522 RGD:9585654 NCBI chrNW_004955423:23,184,326...23,208,206
Ensembl chrNW_004955423:23,183,937...23,208,282
JBrowse link
G Slc1a2 solute carrier family 1 member 2 ISO (MGI:1203466|PMID:9539795) MGI PMID:9539795 MGI:1203466 NCBI chrNW_004955422:10,929,987...11,082,220
Ensembl chrNW_004955422:10,930,296...11,073,032
JBrowse link
G Slc1a3 solute carrier family 1 member 3 ISO (MGI:1203466|PMID:9539795) MGI PMID:9539795 MGI:1203466 NCBI chrNW_004955426:21,371,985...21,450,749
Ensembl chrNW_004955426:21,371,985...21,451,069
JBrowse link
G Slc4a10 solute carrier family 4 member 10 ISO (MGI:3772751|PMID:18165320) MGI PMID:18165320 MGI:3772751 NCBI chrNW_004955449:11,879,070...12,159,981
Ensembl chrNW_004955449:11,879,016...12,160,065
JBrowse link
G Syne1 spectrin repeat containing nuclear envelope protein 1 ISO RGD PMID:8700883 RGD:632616 NCBI chrNW_004955439:9,131,227...9,574,112 JBrowse link
G Th tyrosine hydroxylase ISO RGD PMID:21185915 RGD:5128767 NCBI chrNW_004955422:13,943,590...13,951,102
Ensembl chrNW_004955422:13,943,552...13,951,137
JBrowse link
adaptation of rhodopsin mediated signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh11 retinol dehydrogenase 11 ISO (MGI:3584215|PMID:15790565) MGI PMID:15790565 MGI:3584215 NCBI chrNW_004955466:2,506,641...2,521,506 JBrowse link
cellular response to high light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt2 AKT serine/threonine kinase 2 ISO (MGI:3695811|PMID:17202487) MGI PMID:17202487 MGI:3695811 NCBI chrNW_004955578:950,258...1,004,438 JBrowse link
cellular response to light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:3696487|PMID:17234588) MGI PMID:17234588 MGI:3696487 NCBI chrNW_004955406:33,817,754...34,005,937
Ensembl chrNW_004955406:33,817,605...34,005,943
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO RGD PMID:17475674 RGD:9068879 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497
JBrowse link
G Kcne1 potassium voltage-gated channel subfamily E regulatory subunit 1 ISO RGD PMID:24202060 RGD:12910722 NCBI chrNW_004955407:33,807,581...33,814,356 JBrowse link
G Opn5 opsin 5 ISO (MGI:6376341|PMID:31607531) UniProt PMID:31607531 MGI:6376341 NCBI chrNW_004955437:12,171,544...12,197,409
Ensembl chrNW_004955437:12,171,544...12,213,264
JBrowse link
G Rho rhodopsin ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982
JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO (MGI:1354839|PMID:10725384) MGI PMID:10725384 MGI:1354839 NCBI chrNW_004955601:398,772...453,271 JBrowse link
G Trpm1 transient receptor potential cation channel subfamily M member 1 ISO (PMID:19896109)
(MGI:4398796|PMID:19861548), (MGI:4849309|PMID:21052544)
(MGI:4420740|PMID:19966281)
UniProtKB
UniProt
MGI
PMID:19861548, PMID:19896109, PMID:19966281, PMID:21052544 MGI:4398796, MGI:4420740, MGI:4849309 NCBI chrNW_004955416:29,846,374...29,880,922
Ensembl chrNW_004955416:29,814,077...29,939,344
JBrowse link
cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 (Colton blood group) ISO (PMID:19424603) UniProtKB PMID:19424603 NCBI chrNW_004955410:32,066,196...32,078,661 JBrowse link
G Atr ATR serine/threonine kinase ISO (PMID:9925639) BHF-UCL PMID:9925639 NCBI chrNW_004955508:3,337,036...3,440,313
Ensembl chrNW_004955508:3,337,432...3,440,257
JBrowse link
G Aurkb aurora kinase B ISO (PMID:20959462) UniProtKB PMID:20959462 NCBI chrNW_004955467:8,715,387...8,720,889
Ensembl chrNW_004955467:8,715,136...8,723,932
JBrowse link
G Bak1 BCL2 antagonist/killer 1 ISO (PMID:15901672)
(MGI:3689797|PMID:15901672)
UniProtKB
UniProt
PMID:15901672 MGI:3689797 NCBI chrNW_004955437:2,036,415...2,041,997
Ensembl chrNW_004955437:2,036,415...2,041,997
JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO (MGI:3042308|PMID:14963330) MGI PMID:14963330 MGI:3042308 NCBI chrNW_004955559:1,695,960...1,700,246
Ensembl chrNW_004955559:1,695,960...1,700,244
JBrowse link
G Bmf Bcl2 modifying factor ISO (PMID:23629966)
(MGI:5490676|PMID:23629966)
CAFA PMID:23629966 MGI:5490676 NCBI chrNW_004955416:7,048,654...7,068,917
Ensembl chrNW_004955416:7,052,290...7,068,910
JBrowse link
G Casp9 caspase 9 ISO (PMID:15657060) UniProtKB PMID:15657060 NCBI chrNW_004955527:2,613,691...2,630,217
Ensembl chrNW_004955527:2,613,683...2,629,738
JBrowse link
G Cdc25a cell division cycle 25A ISO (PMID:19966869) UniProtKB PMID:19966869 NCBI chrNW_004955420:24,345,002...24,361,802
Ensembl chrNW_004955420:24,344,388...24,362,596
JBrowse link
G Cops9 COP9 signalosome subunit 9 ISO (PMID:26456823) UniProtKB PMID:26456823 NCBI chrNW_004955542:1,131,110...1,135,871 JBrowse link
G Crebbp CREB binding protein ISO (PMID:24939902) UniProtKB PMID:24939902 NCBI chrNW_004955442:13,559,496...13,691,913
Ensembl chrNW_004955442:13,559,496...13,692,004
JBrowse link
G Ddias DNA damage induced apoptosis suppressor ISO (MGI:3718924|PMID:17515607) MGI PMID:17515607 MGI:3718924 NCBI chrNW_004955414:9,607,338...9,636,941
Ensembl chrNW_004955414:9,607,064...9,630,781
JBrowse link
G Dhx36 DEAH-box helicase 36 ISO (PMID:27940037) UniProt PMID:27940037 NCBI chrNW_004955448:5,634,072...5,676,272
Ensembl chrNW_004955448:5,634,072...5,676,319
JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 ISO (MGI:5700311|PMID:12176355) UniProt PMID:12176355 MGI:5700311 NCBI chrNW_004955416:6,897,897...7,005,602
Ensembl chrNW_004955416:6,897,848...7,009,965
JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha ISO (MGI:5700311|PMID:12176355) UniProt PMID:12176355 MGI:5700311 NCBI chrNW_004955466:2,838,785...2,855,443
Ensembl chrNW_004955466:2,838,785...2,855,172
JBrowse link
G Ep300 E1A binding protein p300 ISO (PMID:24939902) UniProtKB PMID:24939902 NCBI chrNW_004955413:26,647,553...26,727,875
Ensembl chrNW_004955413:26,648,339...26,727,933
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:17055345) BHF-UCL PMID:17055345 NCBI chrNW_004955442:4,833,453...4,861,201
Ensembl chrNW_004955442:4,831,721...4,861,122
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 ISO (PMID:17873522) UniProtKB PMID:17873522 NCBI chrNW_004955471:6,852,459...7,026,590
Ensembl chrNW_004955471:6,848,101...6,955,881
JBrowse link
G Fmr1 FMRP translational regulator 1 ISO (MGI:5602914|PMID:24813610) UniProt PMID:24813610 MGI:5602914 NCBI chrNW_004955498:566,741...594,837
Ensembl chrNW_004955498:566,688...595,360
JBrowse link
G Ino80 INO80 complex ATPase subunit ISO (PMID:18026119) UniProtKB PMID:18026119 NCBI chrNW_004955416:7,870,521...8,020,862
Ensembl chrNW_004955416:7,870,258...7,961,812
JBrowse link
G Kdm1a lysine demethylase 1A ISO (PMID:24217620) MGI PMID:24217620 NCBI chrNW_004955452:3,044,042...3,104,650
Ensembl chrNW_004955452:3,044,264...3,104,418
JBrowse link
G Mapk13 mitogen-activated protein kinase 13 ISO (PMID:9218798) UniProtKB PMID:9218798 NCBI chrNW_004955437:3,899,988...3,907,781
Ensembl chrNW_004955437:3,899,950...3,909,114
JBrowse link
G Mapk9 mitogen-activated protein kinase 9 ISO RGD PMID:8875991 RGD:2304246 NCBI chrNW_004955408:391,094...430,638
Ensembl chrNW_004955408:391,094...430,981
JBrowse link
G Mettl3 methyltransferase like 3 ISO (PMID:28297716) UniProtKB PMID:28297716 NCBI chrNW_004955550:2,211,270...2,227,715
Ensembl chrNW_004955550:2,211,270...2,227,715
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO (PMID:17873522) UniProtKB PMID:17873522 NCBI chrNW_004955461:2,714,022...2,718,872
Ensembl chrNW_004955461:2,714,022...2,718,982
JBrowse link
G N4bp1 NEDD4 binding protein 1 ISO (PMID:17592138)
(MGI:3829128|PMID:17592138)
BHF-UCL PMID:17592138 MGI:3829128 NCBI chrNW_004955474:6,796,068...6,814,906
Ensembl chrNW_004955474:6,796,066...6,814,906
JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase ISO (PMID:17996703) BHF-UCL PMID:17996703 NCBI chrNW_004955409:183,645...281,252
Ensembl chrNW_004955409:183,545...281,318
JBrowse link
G Nfatc4 nuclear factor of activated T cells 4 ISO (MGI:3709926|PMID:17242187) MGI PMID:17242187 MGI:3709926 NCBI chrNW_004955409:35,931,208...35,941,555
Ensembl chrNW_004955409:35,931,173...35,940,696
JBrowse link
G Noc2l NOC2 like nucleolar associated transcriptional repressor ISO (PMID:20959462) UniProtKB PMID:20959462 NCBI chrNW_004955486:9,750,969...9,763,622
Ensembl chrNW_004955486:9,751,053...9,767,104
JBrowse link
G Npm1 nucleophosmin 1 ISO (PMID:19160485) CAFA PMID:19160485 NCBI chrNW_004955408:24,151,070...24,218,783 JBrowse link
G Nsmce3 NSE3 homolog, SMC5-SMC6 complex component ISO (PMID:27427983) UniProtKB PMID:27427983 NCBI chrNW_004955416:29,261,347...29,262,696 JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 ISO (PMID:24289924) BHF-UCL PMID:24289924 NCBI chrNW_004955489:520,875...557,609
Ensembl chrNW_004955489:520,875...557,615
JBrowse link
G Pbk PDZ binding kinase ISO (MGI:5293269|PMID:21715333) MGI PMID:21715333 MGI:5293269 NCBI chrNW_004955403:50,332,167...50,353,147
Ensembl chrNW_004955403:50,330,981...50,352,570
JBrowse link
G Pcna proliferating cell nuclear antigen ISO (PMID:24939902) UniProtKB
RGD
PMID:8905661, PMID:24939902 RGD:10448977 NCBI chrNW_004955415:15,744,601...15,748,910
Ensembl chrNW_004955415:15,744,601...15,749,673
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO (MGI:3709926|PMID:17242187) MGI PMID:17242187 MGI:3709926 NCBI chrNW_004955446:1,020,707...1,098,327
Ensembl chrNW_004955446:1,020,043...1,098,820
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO (PMID:24939902) UniProtKB PMID:24939902 NCBI chrNW_004955559:712,375...730,551
Ensembl chrNW_004955559:712,321...725,661
JBrowse link
G Polk DNA polymerase kappa ISO (PMID:28297716) UniProtKB PMID:28297716 NCBI chrNW_004955425:25,164,749...25,228,064
Ensembl chrNW_004955425:25,161,222...25,228,524
JBrowse link
G Ppp1r15a protein phosphatase 1 regulatory subunit 15A ISO RGD PMID:9811446 RGD:9999409 NCBI chrNW_004955559:1,750,227...1,753,607 JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 ISO RGD PMID:22306367 RGD:5688265 NCBI chrNW_004955406:25,077,988...25,086,259
Ensembl chrNW_004955406:25,079,945...25,086,171
JBrowse link
G Ptn pleiotrophin ISO RGD PMID:17925408 RGD:10044023 NCBI chrNW_004955494:5,580,264...5,681,848
Ensembl chrNW_004955494:5,580,422...5,684,190
JBrowse link
G Ptprk protein tyrosine phosphatase receptor type K ISO (PMID:16849327) UniProtKB PMID:16849327 NCBI chrNW_004955436:8,975,742...9,371,608
Ensembl chrNW_004955436:8,975,554...9,380,971
JBrowse link
G Rhbdd1 rhomboid domain containing 1 ISO (MGI:5430884|PMID:19358743) UniProt PMID:19358743 MGI:5430884 NCBI chrNW_004955453:7,527,090...7,656,689
Ensembl chrNW_004955453:7,528,916...7,644,477
JBrowse link
G Rhno1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 ISO (PMID:21659603) UniProtKB PMID:21659603 NCBI chrNW_004955429:18,408,121...18,415,832
Ensembl chrNW_004955429:18,408,117...18,415,832
JBrowse link
G Rnf168 ring finger protein 168 ISO (MGI:5562615|PMID:24217620) MGI PMID:24217620 MGI:5562615 NCBI chrNW_004955420:12,656,815...12,676,836
Ensembl chrNW_004955420:12,657,272...12,676,426
JBrowse link
G Rpl26 ribosomal protein L26 ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004955467:8,519,760...8,525,514
Ensembl chrNW_004955467:8,519,760...8,527,182
JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 ISO (PMID:18026119) UniProtKB PMID:18026119 NCBI chrNW_004955559:1,657,241...1,674,272
Ensembl chrNW_004955559:1,654,059...1,674,272
JBrowse link
G Sde2 SDE2 telomere maintenance homolog ISO (PMID:27906959) UniProt PMID:27906959 NCBI chrNW_004955489:181,425...210,966
Ensembl chrNW_004955489:180,414...210,900
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 ISO (PMID:24289924) ParkinsonsUK-UCL PMID:24289924 NCBI chrNW_004955475:10,930,175...11,006,876 JBrowse link
G Tmem161a transmembrane protein 161A ISO (PMID:16551573) BHF-UCL PMID:16551573 NCBI chrNW_004955524:2,667,089...2,674,550
Ensembl chrNW_004955524:2,666,885...2,674,215
JBrowse link
G Tp53 tumor protein p53 ISO (PMID:16213212), (PMID:23629966)
(MGI:5490676|PMID:23629966)
(MGI:3042308|PMID:14963330)
CAFA
MGI
PMID:14963330, PMID:16213212, PMID:23629966 MGI:3042308, MGI:5490676 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 ISO (MGI:2153600|PMID:11557757) MGI PMID:11557757 MGI:2153600 NCBI chrNW_004955417:11,063,217...11,079,389
Ensembl chrNW_004955417:11,067,715...11,073,635
JBrowse link
G Trex1 three prime repair exonuclease 1 ISO (MGI:5014018|PMID:20511593) MGI PMID:20511593 MGI:5014018 NCBI chrNW_004955532:533,877...535,767
Ensembl chrNW_004955532:533,877...535,767
JBrowse link
G Triap1 TP53 regulated inhibitor of apoptosis 1 ISO (PMID:15735003) BHF-UCL PMID:15735003 NCBI chrNW_004955455:11,195,399...11,198,402
Ensembl chrNW_004955455:11,195,399...11,198,402
JBrowse link
G Usp28 ubiquitin specific peptidase 28 ISO (PMID:17873522) UniProtKB PMID:17873522 NCBI chrNW_004955412:15,425,136...15,469,819
Ensembl chrNW_004955412:15,426,159...15,443,023
JBrowse link
G Usp47 ubiquitin specific peptidase 47 ISO (MGI:4839431|PMID:19966869) UniProt PMID:19966869 MGI:4839431 NCBI chrNW_004955414:27,357,602...27,462,481
Ensembl chrNW_004955414:27,357,602...27,462,731
JBrowse link
G Yy1 YY1 transcription factor ISO (PMID:18026119) UniProtKB PMID:18026119 NCBI chrNW_004955438:21,341,374...21,377,674 JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 ISO (PMID:24657165) UniProtKB PMID:24657165 NCBI chrNW_004955466:5,353,355...5,376,240
Ensembl chrNW_004955466:5,355,344...5,376,240
JBrowse link
cellular response to UV-A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cers1 ceramide synthase 1 ISO (PMID:19800881) UniProtKB PMID:19800881 NCBI chrNW_004955524:2,788,672...2,798,068 JBrowse link
G Mme membrane metalloendopeptidase ISO (PMID:20876573) UniProtKB PMID:20876573 NCBI chrNW_004955448:6,193,113...6,311,666
Ensembl chrNW_004955448:6,226,059...6,314,949
JBrowse link
G Mmp2 matrix metallopeptidase 2 ISO (PMID:31380578) UniProt PMID:31380578 NCBI chrNW_004955433:13,024,844...13,050,041
Ensembl chrNW_004955433:13,024,418...13,052,775
JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO (PMID:31380578) UniProt PMID:31380578 NCBI chrNW_004955445:11,295,500...11,303,322
Ensembl chrNW_004955445:11,295,448...11,303,288
JBrowse link
G Opn1sw opsin 1, short wave sensitive ISO (PMID:31380578) UniProt PMID:31380578 NCBI chrNW_004955479:9,573,594...9,576,668
Ensembl chrNW_004955479:9,573,594...9,576,668
JBrowse link
G Opn3 opsin 3 ISO (PMID:31380578) UniProt PMID:31380578 NCBI chrNW_004955406:10,450,810...10,493,958
Ensembl chrNW_004955406:10,450,768...10,493,958
JBrowse link
G Opn5 opsin 5 ISO (PMID:31380578) UniProt PMID:31380578 NCBI chrNW_004955437:12,171,544...12,197,409
Ensembl chrNW_004955437:12,171,544...12,213,264
JBrowse link
G Ppid peptidylprolyl isomerase D ISO (PMID:23220213) UniProtKB PMID:23220213 NCBI chrNW_004955471:12,309,224...12,323,198
Ensembl chrNW_004955471:12,305,236...12,323,198
JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 ISO (PMID:31380578) UniProt PMID:31380578 NCBI chrNW_004955516:507,113...511,360
Ensembl chrNW_004955516:505,789...512,118
JBrowse link
cellular response to UV-B term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin dependent kinase inhibitor 1A ISO (MGI:5613877|PMID:25329316) UniProt PMID:25329316 MGI:5613877 NCBI chrNW_004955437:6,254,638...6,261,278
Ensembl chrNW_004955437:6,254,309...6,261,479
JBrowse link
G Crip1 cysteine rich protein 1 ISO (PMID:20415737) UniProtKB PMID:20415737 NCBI chrNW_004955538:3,683,747...3,686,468 JBrowse link
G Hyal1 hyaluronidase 1 ISO (PMID:21699545) UniProtKB PMID:21699545 NCBI chrNW_004955532:2,113,016...2,116,093
Ensembl chrNW_004955532:2,112,771...2,115,952
JBrowse link
G Hyal2 hyaluronidase 2 ISO (PMID:21699545) UniProtKB PMID:21699545 NCBI chrNW_004955532:2,120,781...2,125,083
Ensembl chrNW_004955532:2,120,781...2,123,726
JBrowse link
G Hyal3 hyaluronidase 3 ISO (PMID:21699545) UniProtKB PMID:21699545 NCBI chrNW_004955532:2,107,019...2,112,356
Ensembl chrNW_004955532:2,106,565...2,108,892
JBrowse link
G Mfap4 microfibril associated protein 4 ISO (PMID:22355679) BHF-UCL PMID:22355679 NCBI chrNW_004955467:378,389...381,593
Ensembl chrNW_004955467:377,887...381,593
JBrowse link
G Mme membrane metalloendopeptidase ISO (PMID:20876573) UniProtKB PMID:20876573 NCBI chrNW_004955448:6,193,113...6,311,666
Ensembl chrNW_004955448:6,226,059...6,314,949
JBrowse link
G Rpl13a ribosomal protein L13a ISO RGD PMID:10483362 RGD:11036101 NCBI chrNW_004955559:1,358,479...1,362,663 JBrowse link
G Rpl35 ribosomal protein L35 ISO RGD PMID:10483362 RGD:11036101 NCBI chrNW_004955419:3,371,109...3,374,555
Ensembl chrNW_004955419:3,371,109...3,374,555
JBrowse link
G Stk11 serine/threonine kinase 11 ISO (PMID:25329316)
(MGI:5613877|PMID:25329316)
UniProtKB
UniProt
PMID:25329316 MGI:5613877 NCBI chrNW_004955495:6,678,195...6,699,408
Ensembl chrNW_004955495:6,678,195...6,699,058
JBrowse link
cellular response to UV-C term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ei24 EI24 autophagy associated transmembrane protein ISO (MGI:5543725|PMID:24014029) MGI PMID:24014029 MGI:5543725 NCBI chrNW_004955412:26,574,814...26,586,154
Ensembl chrNW_004955412:26,574,866...26,585,161
JBrowse link
G Impact impact RWD domain protein ISO (MGI:5576818|PMID:24333428) UniProt PMID:24333428 MGI:5576818 NCBI chrNW_004955402:12,752,748...12,781,238
Ensembl chrNW_004955402:12,752,432...12,779,299
JBrowse link
G LOC102027889 chromosome unknown open reading frame, human C9orf116 ISO (MGI:4868626|PMID:21159655) MGI PMID:21159655 MGI:4868626 NCBI chrNW_004955513:4,047,764...4,055,692
Ensembl chrNW_004955513:4,052,413...4,055,691
JBrowse link
G Mdm2 MDM2 proto-oncogene ISO RGD PMID:14558917 RGD:2317408 NCBI chrNW_004955458:15,264,028...15,287,290
Ensembl chrNW_004955458:15,263,739...15,286,808
JBrowse link
G Polh DNA polymerase eta ISO (MGI:3695544|PMID:17114294) MGI PMID:17114294 MGI:3695544 NCBI chrNW_004955437:9,392,484...9,409,186
Ensembl chrNW_004955437:9,397,141...9,414,042
JBrowse link
G Poli DNA polymerase iota ISO (MGI:3695544|PMID:17114294) MGI PMID:17114294 MGI:3695544 NCBI chrNW_004955402:38,866,528...38,891,235
Ensembl chrNW_004955402:38,866,744...38,891,011
JBrowse link
G Tp53 tumor protein p53 ISO (MGI:5543725|PMID:24014029) MGI PMID:24014029 MGI:5543725 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
JBrowse link
dark adaptation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent2 terminal nucleotidyltransferase 2 ISO RGD PMID:23700402 RGD:11041783 NCBI chrNW_004955425:21,518,154...21,576,068
Ensembl chrNW_004955425:21,517,755...21,576,068
JBrowse link
detection of light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde6b phosphodiesterase 6B ISO (MGI:2155023|PMID:11747369) MGI PMID:11747369 MGI:2155023 NCBI chrNW_004955514:234,972...279,420
Ensembl chrNW_004955514:234,972...279,420
JBrowse link
G Rho rhodopsin ISO (MGI:2155023|PMID:11747369) MGI PMID:11747369 MGI:2155023 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982
JBrowse link
detection of light stimulus involved in visual perception term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Best1 bestrophin 1 ISO (MGI:3795256|PMID:16636205) MGI PMID:16636205 MGI:3795256 NCBI chrNW_004955511:5,773,025...5,783,800
Ensembl chrNW_004955511:5,773,670...5,780,540
JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F ISO (PMID:7571473) UniProtKB PMID:7571473 NCBI chrNW_004955543:692,035...717,364
Ensembl chrNW_004955543:692,035...717,364
JBrowse link
G Cacna2d4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 ISO (PMID:17033974) UniProtKB PMID:17033974 NCBI chrNW_004955454:4,329,520...4,430,460
Ensembl chrNW_004955454:4,331,370...4,430,508
JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 ISO (MGI:3795256|PMID:16636205) MGI PMID:16636205 MGI:3795256 NCBI chrNW_004955440:17,364,996...17,497,446 JBrowse link
G Ccdc66 coiled-coil domain containing 66 ISO (MGI:5141557|PMID:21680557) CACAO PMID:21680557 MGI:5141557 NCBI chrNW_004955430:6,402,622...6,440,154
Ensembl chrNW_004955430:6,402,701...6,439,985
JBrowse link
G Cep250 centrosomal protein 250 ISO (MGI:6317055|PMID:30998843) UniProt PMID:30998843 MGI:6317055 NCBI chrNW_004955422:25,932,377...25,978,524 JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO (PMID:15557452) UniProtKB PMID:15557452 NCBI chrNW_004955433:15,467,042...15,556,471 JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:5315300|PMID:22447858) MGI PMID:22447858 MGI:5315300 NCBI chrNW_004955406:33,817,754...34,005,937
Ensembl chrNW_004955406:33,817,605...34,005,943
JBrowse link
G Gja10 gap junction protein alpha 10 ISO (MGI:3654563|PMID:16820008) MGI PMID:16820008 MGI:3654563 NCBI chrNW_004955411:16,586,673...16,601,999
Ensembl chrNW_004955411:16,593,576...16,595,042
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (PMID:17584859)
(MGI:3772743|PMID:18171936)
UniProtKB
MGI
PMID:17584859, PMID:18171936 MGI:3772743 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO (PMID:12077706)
(MGI:3714271|PMID:17065522)
UniProtKB
MGI
PMID:12077706, PMID:17065522 MGI:3714271 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968
JBrowse link
G Grm6 glutamate metabotropic receptor 6 ISO (PMID:17405131) UniProtKB PMID:17405131 NCBI chrNW_004955408:1,421,132...1,432,010
Ensembl chrNW_004955408:1,421,132...1,433,622
JBrowse link
G Gucy2f guanylate cyclase 2F, retinal ISO (MGI:3708225|PMID:17255100) CACAO PMID:17255100 MGI:3708225 NCBI chrNW_004955490:6,331,247...6,437,563
Ensembl chrNW_004955490:6,331,247...6,437,563
JBrowse link
G Prph2 peripherin 2 ISO (MGI:5905515|PMID:28053051)
(MGI:6305433|PMID:26420485)
(MGI:5905515|PMID:28053051), (MGI:6305433|PMID:26420485)
MGI PMID:26420485, PMID:28053051 MGI:5905515, MGI:6305433 NCBI chrNW_004955437:8,784,211...8,794,789
Ensembl chrNW_004955437:8,782,183...8,795,017
JBrowse link
G Rbp4 retinol binding protein 4 ISO (MGI:3687059|PMID:12484775) MGI PMID:12484775 MGI:3687059 NCBI chrNW_004955507:112,342...120,050
Ensembl chrNW_004955507:108,669...120,584
JBrowse link
G Reep6 receptor accessory protein 6 ISO (PMID:27889058) UniProtKB PMID:27889058 NCBI chrNW_004955764:17,640...22,996
Ensembl chrNW_004955764:3,793...23,152
JBrowse link
G Rgs9bp regulator of G protein signaling 9 binding protein ISO (MGI:3027216|PMID:14625292) MGI PMID:14625292 MGI:3027216 NCBI chrNW_004955468:5,311,318...5,313,612
Ensembl chrNW_004955468:5,312,880...5,313,587
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:5905515|PMID:28053051) MGI PMID:28053051 MGI:5905515 NCBI chrNW_004955599:578,165...580,055
Ensembl chrNW_004955599:573,426...579,812
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO (PMID:15557452) UniProtKB PMID:15557452 NCBI chrNW_004955423:23,184,326...23,208,206
Ensembl chrNW_004955423:23,183,937...23,208,282
JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (PMID:21521437) CACAO PMID:21521437 NCBI chrNW_004955550:2,015,319...2,073,627
Ensembl chrNW_004955550:2,021,838...2,073,498
JBrowse link
G Sema5a semaphorin 5A ISO (MGI:5140622|PMID:21835343) MGI PMID:21835343 MGI:5140622 NCBI chrNW_004955504:6,343,747...6,691,945
Ensembl chrNW_004955504:6,350,866...6,762,104
JBrowse link
G Sema5b semaphorin 5B ISO (MGI:5140622|PMID:21835343) MGI PMID:21835343 MGI:5140622 NCBI chrNW_004955427:22,109,946...22,219,497
Ensembl chrNW_004955427:22,109,607...22,180,602
JBrowse link
G Tulp1 TUB like protein 1 ISO (PMID:15557452) UniProtKB PMID:15557452 NCBI chrNW_004955437:3,405,218...3,417,079 JBrowse link
detection of UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fech ferrochelatase ISO (MGI:2384247|PMID:12149233) MGI PMID:12149233 MGI:2384247 NCBI chrNW_004955402:41,902,868...41,938,099
Ensembl chrNW_004955402:41,902,868...41,938,174
JBrowse link
detection of visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx6 iroquois homeobox 6 ISO (MGI:5447580|PMID:23172916) MGI PMID:23172916 MGI:5447580 NCBI chrNW_004955433:12,889,025...12,895,090
Ensembl chrNW_004955433:12,889,001...12,895,121
JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT ISO (PMID:1730053) UniProtKB PMID:1730053 NCBI chrNW_004955509:5,007,385...5,319,683
Ensembl chrNW_004955509:5,007,182...5,319,894
JBrowse link
G Trex1 three prime repair exonuclease 1 ISO (MGI:5562498|PMID:23993650) MGI PMID:23993650 MGI:5562498 NCBI chrNW_004955532:533,877...535,767
Ensembl chrNW_004955532:533,877...535,767
JBrowse link
entrainment of circadian clock by photoperiod term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh7 atonal bHLH transcription factor 7 ISO (MGI:5699646|PMID:26392540) UniProt PMID:26392540 MGI:5699646 NCBI chrNW_004955425:20,559,466...20,560,275 JBrowse link
G Bhlhe40 basic helix-loop-helix family member e40 ISO (MGI:3798698|PMID:18411297) BHF-UCL PMID:18411297 MGI:3798698 NCBI chrNW_004955421:8,463,337...8,468,877
Ensembl chrNW_004955421:8,463,018...8,468,877
JBrowse link
G Crtc1 CREB regulated transcription coactivator 1 ISO (MGI:5532783|PMID:23993098) UniProt PMID:23993098 MGI:5532783 NCBI chrNW_004955524:2,884,654...2,940,601
Ensembl chrNW_004955524:2,884,654...2,940,815
JBrowse link
G Cry1 cryptochrome circadian regulator 1 ISO (MGI:5490394|PMID:23616524) UniProt PMID:23616524 MGI:5490394 NCBI chrNW_004955405:40,878,227...40,941,664
Ensembl chrNW_004955405:40,874,322...40,941,664
JBrowse link
G Cry2 cryptochrome circadian regulator 2 ISO (MGI:5490394|PMID:23616524) UniProt PMID:23616524 MGI:5490394 NCBI chrNW_004955422:2,084,020...2,114,980
Ensembl chrNW_004955422:2,083,138...2,115,072
JBrowse link
G Fbxl21 F-box and leucine rich repeat protein 21 ISO (MGI:5470183|PMID:23452855), (MGI:5487698|PMID:23452856) UniProt PMID:23452855, PMID:23452856 MGI:5470183, MGI:5487698 NCBI chrNW_004955408:30,997,793...31,012,276 JBrowse link
G Fbxl3 F-box and leucine rich repeat protein 3 ISO (MGI:5470183|PMID:23452855), (MGI:5487698|PMID:23452856), (MGI:5490394|PMID:23616524) UniProt PMID:23452855, PMID:23452856, PMID:23616524 MGI:5470183, MGI:5487698, MGI:5490394 NCBI chrNW_004955404:30,215,140...30,229,798
Ensembl chrNW_004955404:30,215,108...30,229,798
JBrowse link
G Id2 inhibitor of DNA binding 2 ISO (MGI:3838062|PMID:19217292) UniProt PMID:19217292 MGI:3838062 NCBI chrNW_004955487:878,326...880,783
Ensembl chrNW_004955487:878,326...880,783
JBrowse link
G Mta1 metastasis associated 1 ISO (MGI:5582861|PMID:24089055) UniProt PMID:24089055 MGI:5582861 NCBI chrNW_004955538:3,630,383...3,671,005
Ensembl chrNW_004955538:3,634,341...3,671,005
JBrowse link
G Nr2f6 nuclear receptor subfamily 2 group F member 6 ISO (MGI:3530176|PMID:15741322) MGI PMID:15741322 MGI:3530176 NCBI chrNW_004955524:961,232...965,012 JBrowse link
G Opn4 opsin 4 ISO (MGI:5925970|PMID:26320947) MGI PMID:26320947 MGI:5925970 NCBI chrNW_004955510:5,723,804...5,736,070
Ensembl chrNW_004955510:5,724,120...5,736,135
JBrowse link
G Opn5 opsin 5 ISO (MGI:5699646|PMID:26392540), (MGI:6376341|PMID:31607531), (MGI:6378274|PMID:30240620) UniProt PMID:26392540, PMID:30240620, PMID:31607531 MGI:5699646, MGI:6376341, MGI:6378274 NCBI chrNW_004955437:12,171,544...12,197,409
Ensembl chrNW_004955437:12,171,544...12,213,264
JBrowse link
G Pde6b phosphodiesterase 6B ISO (MGI:6378274|PMID:30240620) UniProt PMID:30240620 MGI:6378274 NCBI chrNW_004955514:234,972...279,420
Ensembl chrNW_004955514:234,972...279,420
JBrowse link
G Per1 period circadian regulator 1 ISO (MGI:3578039|PMID:15888647) UniProt PMID:15888647 MGI:3578039 NCBI chrNW_004955467:8,798,436...8,813,369
Ensembl chrNW_004955467:8,797,912...8,813,365
JBrowse link
G Pml PML nuclear body scaffold ISO (MGI:5314433|PMID:22274616) UniProt PMID:22274616 MGI:5314433 NCBI chrNW_004955450:3,654,854...3,692,057
Ensembl chrNW_004955450:3,656,498...3,692,406
JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha ISO (MGI:5086036|PMID:21712997) UniProt PMID:21712997 MGI:5086036 NCBI chrNW_004955422:18,076,670...18,079,859
Ensembl chrNW_004955422:18,076,670...18,079,859
JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta ISO (MGI:5086036|PMID:21712997) UniProt PMID:21712997 MGI:5086036 NCBI chrNW_004955469:10,657,029...10,682,398
Ensembl chrNW_004955469:10,662,032...10,682,398
JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma ISO (MGI:5086036|PMID:21712997) UniProt PMID:21712997 MGI:5086036 NCBI chrNW_004955482:7,582,605...7,605,340
Ensembl chrNW_004955482:7,578,782...7,606,132
JBrowse link
G Sik1 salt inducible kinase 1 ISO (MGI:5532783|PMID:23993098) UniProt PMID:23993098 MGI:5532783 NCBI chrNW_004955407:38,739,062...38,749,293 JBrowse link
G Tp53 tumor protein p53 ISO (MGI:5613453|PMID:24051492) UniProt PMID:24051492 MGI:5613453 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
JBrowse link
G Usp2 ubiquitin specific peptidase 2 ISO (MGI:5607210|PMID:23213472) UniProt PMID:23213472 MGI:5607210 NCBI chrNW_004955412:20,435,778...20,461,898
Ensembl chrNW_004955412:20,433,302...20,457,493
JBrowse link
long-day photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agrp agouti related neuropeptide ISO RGD PMID:19490367 RGD:6480663 NCBI chrNW_004955484:9,165,120...9,166,789
Ensembl chrNW_004955484:9,165,120...9,166,789
JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nedd4 NEDD4 E3 ubiquitin protein ligase ISO (PMID:17996703) BHF-UCL PMID:17996703 NCBI chrNW_004955409:183,645...281,252
Ensembl chrNW_004955409:183,545...281,318
JBrowse link
optokinetic behavior term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chrNW_004955410:28,788,245...28,790,971
Ensembl chrNW_004955410:28,787,817...28,790,962
JBrowse link
G Opn4 opsin 4 ISO (MGI:5699646|PMID:26392540) UniProt PMID:26392540 MGI:5699646 NCBI chrNW_004955510:5,723,804...5,736,070
Ensembl chrNW_004955510:5,724,120...5,736,135
JBrowse link
photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase ISO RGD PMID:12358739 RGD:628397 NCBI chrNW_004955506:5,828,666...5,834,812
Ensembl chrNW_004955506:5,828,659...5,834,812
JBrowse link
G Drd4 dopamine receptor D4 ISO RGD PMID:18321474 RGD:2301031 NCBI chrNW_004955476:11,424,347...11,426,962
Ensembl chrNW_004955476:11,424,411...11,426,960
JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit ISO RGD PMID:16962714 RGD:2293767 NCBI chrNW_004955469:10,297,179...10,319,180
Ensembl chrNW_004955469:10,297,179...10,319,180
JBrowse link
G Nmu neuromedin U ISO RGD PMID:17726140 RGD:1642120 NCBI chrNW_004955447:15,324,702...15,361,726
Ensembl chrNW_004955447:15,328,973...15,357,830
JBrowse link
G Nr1d1 nuclear receptor subfamily 1 group D member 1 ISO RGD PMID:21076970 RGD:10448986 NCBI chrNW_004955451:14,743,763...14,750,903
Ensembl chrNW_004955451:14,742,735...14,750,999
JBrowse link
phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arrb1 arrestin beta 1 ISO (MGI:3772638|PMID:11853756) MGI PMID:11853756 MGI:3772638 NCBI chrNW_004955414:16,478,843...16,568,050
Ensembl chrNW_004955414:16,478,843...16,562,135
JBrowse link
G Asic2 acid sensing ion channel subunit 2 ISO (MGI:3042539|PMID:14762118) MGI PMID:14762118 MGI:3042539 NCBI chrNW_004955481:7,850,730...8,093,255
Ensembl chrNW_004955481:7,850,710...8,871,794
JBrowse link
G Cabp4 calcium binding protein 4 ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chrNW_004955422:18,023,639...18,028,845
Ensembl chrNW_004955422:18,023,639...18,028,845
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO (MGI:3527312|PMID:15634774) MGI PMID:15634774 MGI:3527312 NCBI chrNW_004955433:15,467,042...15,556,471 JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (MGI:1928441|PMID:11095744), (MGI:3609280|PMID:16249514), (MGI:3615719|PMID:15073279), (MGI:3757777|PMID:17881533), (MGI:3772638|PMID:11853756), (MGI:3778702|PMID:18367617) MGI PMID:11095744, PMID:11853756, PMID:15073279, PMID:16249514, PMID:17881533, PMID:18367617 MGI:1928441, MGI:3609280, MGI:3615719, MGI:3757777, MGI:3772638, MGI:3778702 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO (MGI:3761397|PMID:17408617), (MGI:3772743|PMID:18171936) MGI PMID:17408617, PMID:18171936 MGI:3761397, MGI:3772743 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968
JBrowse link
G Gngt1 G protein subunit gamma transducin 1 ISO (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chrNW_004955432:10,653,508...10,657,811
Ensembl chrNW_004955432:10,643,674...10,658,933
JBrowse link
G Guca1b guanylate cyclase activator 1B ISO (MGI:2664110|PMID:11493703), (MGI:3584028|PMID:15173221) MGI PMID:11493703, PMID:15173221 MGI:2664110, MGI:3584028 NCBI chrNW_004955437:8,384,692...8,390,946
Ensembl chrNW_004955437:8,382,299...8,390,946
JBrowse link
G Opn4 opsin 4 ISO (PMID:15674244)
(MGI:2667269|PMID:12808468)
UniProtKB
UniProt
RGD
PMID:11834834, PMID:12808468, PMID:15674244 MGI:2667269, RGD:633348 NCBI chrNW_004955510:5,723,804...5,736,070
Ensembl chrNW_004955510:5,724,120...5,736,135
JBrowse link
G Opn5 opsin 5 ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chrNW_004955437:12,171,544...12,197,409
Ensembl chrNW_004955437:12,171,544...12,213,264
JBrowse link
G Rcvrn recoverin ISO (MGI:3584028|PMID:15173221) MGI PMID:15173221 MGI:3584028 NCBI chrNW_004955467:7,220,237...7,236,450
Ensembl chrNW_004955467:7,220,237...7,236,450
JBrowse link
G Rho rhodopsin ISO (MGI:3655007|PMID:16723493) MGI PMID:16723493 MGI:3655007 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982
JBrowse link
phototransduction, UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Opn5 opsin 5 ISO (PMID:22043319)
(MGI:6230806|PMID:22043319)
UniProt PMID:22043319 MGI:6230806 NCBI chrNW_004955437:12,171,544...12,197,409
Ensembl chrNW_004955437:12,171,544...12,213,264
JBrowse link
phototransduction, visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor interacting protein like 1 ISO (MGI:3054118|PMID:15365173) MGI PMID:15365173 MGI:3054118 NCBI chrNW_004955467:11,952,940...11,962,147
Ensembl chrNW_004955467:11,952,495...11,962,153
JBrowse link
G Chrm1 cholinergic receptor muscarinic 1 ISO (PMID:12196552) AgBase PMID:12196552 NCBI chrNW_004955599:349,744...356,714
Ensembl chrNW_004955599:349,744...356,714
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (PMID:17584859) UniProtKB PMID:17584859 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603
JBrowse link
G Pde6c phosphodiesterase 6C ISO (MGI:3655007|PMID:16723493) MGI PMID:16723493 MGI:3655007 NCBI chrNW_004955507:129,678...179,586
Ensembl chrNW_004955507:129,678...179,305
JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin ISO RGD PMID:2525480 RGD:6893558 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982
JBrowse link
regulation of mRNA stability involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npm1 nucleophosmin 1 ISO (PMID:12080348) UniProtKB PMID:12080348 NCBI chrNW_004955408:24,151,070...24,218,783 JBrowse link
regulation of rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor interacting protein like 1 ISO (MGI:3054134|PMID:15365178)
(MGI:3054118|PMID:15365173)
MGI PMID:15365173, PMID:15365178 MGI:3054118, MGI:3054134 NCBI chrNW_004955467:11,952,940...11,962,147
Ensembl chrNW_004955467:11,952,495...11,962,153
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 ISO (PMID:15946941) UniProtKB PMID:15946941 NCBI chrNW_004955404:343,009...353,683
Ensembl chrNW_004955404:343,009...353,683
JBrowse link
regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek1 checkpoint kinase 1 ISO (MGI:5294291|PMID:18243098) UniProt PMID:18243098 MGI:5294291 NCBI chrNW_004955412:26,627,606...26,650,554 JBrowse link
regulation of translation involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl26 ribosomal protein L26 ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004955467:8,519,760...8,525,514
Ensembl chrNW_004955467:8,519,760...8,527,182
JBrowse link
response to blue light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpt1b carnitine palmitoyltransferase 1B ISO (MGI:6392469|PMID:32040503) UniProt PMID:32040503 MGI:6392469 NCBI chrNW_004955413:33,578,734...33,588,055
Ensembl chrNW_004955413:33,578,355...33,588,674
JBrowse link
G Dct dopachrome tautomerase ISO (PMID:28842328) UniProt PMID:28842328 NCBI chrNW_004955404:15,359,402...15,395,556
Ensembl chrNW_004955404:15,359,402...15,395,535
JBrowse link
G Kcnj10 potassium inwardly rectifying channel subfamily J member 10 ISO RGD PMID:18450590 RGD:2326038 NCBI chrNW_004955468:11,828,525...11,860,365
Ensembl chrNW_004955468:11,828,525...11,860,365
JBrowse link
G Opn3 opsin 3 ISO (PMID:30168605)
(MGI:6392469|PMID:32040503)
(PMID:28842328)
UniProt PMID:28842328, PMID:30168605, PMID:32040503 MGI:6392469 NCBI chrNW_004955406:10,450,810...10,493,958
Ensembl chrNW_004955406:10,450,768...10,493,958
JBrowse link
G Tyr tyrosinase ISO (PMID:28842328) UniProt PMID:28842328 NCBI chrNW_004955414:4,244,035...4,314,001
Ensembl chrNW_004955414:4,244,035...4,314,001
JBrowse link
response to high light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mmp9 matrix metallopeptidase 9 ISO RGD PMID:17854381 RGD:8547925 NCBI chrNW_004955445:11,295,500...11,303,322
Ensembl chrNW_004955445:11,295,448...11,303,288
JBrowse link
G Rdh13 retinol dehydrogenase 13 ISO (MGI:5462166|PMID:22605914) MGI PMID:22605914 MGI:5462166 NCBI chrNW_004955567:1,091,636...1,108,648
Ensembl chrNW_004955567:1,091,636...1,108,732
JBrowse link
response to light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain derived neurotrophic factor ISO RGD PMID:21076359 RGD:8655612 NCBI chrNW_004955476:6,773,244...6,822,201
Ensembl chrNW_004955476:6,772,088...6,822,588
JBrowse link
G Cat catalase ISO RGD PMID:17514533 RGD:9107626 NCBI chrNW_004955422:11,783,973...11,826,970
Ensembl chrNW_004955422:11,781,835...11,827,464
JBrowse link
G Cntf ciliary neurotrophic factor ISO RGD PMID:21076359 RGD:8655612 NCBI chrNW_004955511:3,527,552...3,531,275
Ensembl chrNW_004955511:3,527,552...3,534,348
JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO (MGI:5315031|PMID:22411800) MGI PMID:22411800 MGI:5315031 NCBI chrNW_004955417:23,798,044...24,067,759
Ensembl chrNW_004955417:23,798,393...24,067,100
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO RGD PMID:17591908 RGD:2302146 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968
JBrowse link
G Kcnc1 potassium voltage-gated channel subfamily C member 1 ISO RGD PMID:18708127 RGD:9685740 NCBI chrNW_004955414:32,538,968...32,580,370
Ensembl chrNW_004955414:32,538,938...32,580,370
JBrowse link
G Kcnc2 potassium voltage-gated channel subfamily C member 2 ISO RGD PMID:18708127 RGD:9685740 NCBI chrNW_004955405:14,420,447...14,599,780
Ensembl chrNW_004955405:14,422,396...14,600,341
JBrowse link
response to low light intensity stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 ISO RGD PMID:1683769 RGD:2326143 NCBI chrNW_004955446:18,978,261...18,996,794
Ensembl chrNW_004955446:18,978,102...18,998,951
JBrowse link
G Prph2 peripherin 2 ISO RGD PMID:8320859 RGD:8553226 NCBI chrNW_004955437:8,784,211...8,794,789
Ensembl chrNW_004955437:8,782,183...8,795,017
JBrowse link
response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brsk1 BR serine/threonine kinase 1 ISO (PMID:15150265) UniProtKB PMID:15150265 NCBI chrNW_004955567:924,728...943,092
Ensembl chrNW_004955567:924,734...943,701
JBrowse link
G Casp3 caspase 3 ISO (MGI:3691523|PMID:11092819)
(MGI:3615714|PMID:16469926)
MGI PMID:11092819, PMID:16469926 MGI:3615714, MGI:3691523 NCBI chrNW_004955403:24,315,712...24,326,271 JBrowse link
G Casp7 caspase 7 ISO (MGI:3615714|PMID:16469926) MGI PMID:16469926 MGI:3615714 NCBI chrNW_004955431:18,685,408...18,723,221
Ensembl chrNW_004955431:18,686,190...18,723,524
JBrowse link
G Casp9 caspase 9 ISO (MGI:3691523|PMID:11092819) MGI PMID:11092819 MGI:3691523 NCBI chrNW_004955527:2,613,691...2,630,217
Ensembl chrNW_004955527:2,613,683...2,629,738
JBrowse link
G Cat catalase ISO RGD PMID:12592055 RGD:9179775 NCBI chrNW_004955422:11,783,973...11,826,970
Ensembl chrNW_004955422:11,781,835...11,827,464
JBrowse link
G Ccar2 cell cycle and apoptosis regulator 2 ISO (PMID:23352644) UniProtKB PMID:23352644 NCBI chrNW_004955403:46,027,997...46,042,154
Ensembl chrNW_004955403:46,027,998...46,042,154
JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A ISO (MGI:2675761|PMID:12952892) MGI PMID:12952892 MGI:2675761 NCBI chrNW_004955437:6,254,638...6,261,278
Ensembl chrNW_004955437:6,254,309...6,261,479
JBrowse link
G Cdkn2d cyclin dependent kinase inhibitor 2D ISO (PMID:15750620) BHF-UCL PMID:15750620 NCBI chrNW_004955495:1,755,280...1,759,125
Ensembl chrNW_004955495:1,755,878...1,757,037
JBrowse link
G Cirbp cold inducible RNA binding protein ISO (PMID:11574538) UniProtKB PMID:11574538 NCBI chrNW_004955495:6,634,389...6,640,800
Ensembl chrNW_004955495:6,634,394...6,640,800
JBrowse link
G Ddb2 damage specific DNA binding protein 2 ISO (PMID:12732143) UniProtKB PMID:12732143 NCBI chrNW_004955422:961,602...977,066
Ensembl chrNW_004955422:961,893...974,338
JBrowse link
G Dtl denticleless E3 ubiquitin protein ligase homolog ISO (PMID:18794347) UniProtKB PMID:18794347 NCBI chrNW_004955406:5,256,057...5,299,573
Ensembl chrNW_004955406:5,254,558...5,299,573
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO (MGI:3692802|PMID:17020410) MGI PMID:17020410 MGI:3692802 NCBI chrNW_004955555:2,355,005...2,369,599
Ensembl chrNW_004955555:2,355,005...2,369,599
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO (PMID:17509950) UniProtKB PMID:17509950 NCBI chrNW_004955459:3,210,936...3,238,401
Ensembl chrNW_004955459:3,210,479...3,242,576
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:16678501) UniProtKB PMID:16678501 NCBI chrNW_004955442:4,833,453...4,861,201
Ensembl chrNW_004955442:4,831,721...4,861,122
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease ISO (PMID:16167068)
(MGI:3041918|PMID:15082767)
(PMID:8710877)
UniProtKB
MGI
PMID:8710877, PMID:15082767, PMID:16167068 MGI:3041918 NCBI chrNW_004955404:8,294,506...8,321,505 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:16916636)
(MGI:3054497|PMID:15340056), (MGI:3655576|PMID:10843671)
UniProtKB
MGI
PMID:10843671, PMID:15340056, PMID:16916636 MGI:3054497, MGI:3655576 NCBI chrNW_004955556:745,175...812,215
Ensembl chrNW_004955556:748,231...813,133
JBrowse link
G Hus1 HUS1 checkpoint clamp component ISO (MGI:2156961|PMID:11790307)
(MGI:2449744|PMID:12529385)
MGI PMID:11790307, PMID:12529385 MGI:2156961, MGI:2449744 NCBI chrNW_004955456:5,465,180...5,476,380
Ensembl chrNW_004955456:5,465,182...5,474,303
JBrowse link
G LOC102012090 chromosome unknown open reading frame, human C10orf90 ISO (MGI:5285148|PMID:20843368) UniProt PMID:20843368 MGI:5285148 NCBI chrNW_004955477:4,299,277...4,510,702
Ensembl chrNW_004955477:4,297,588...4,510,959
JBrowse link
G Map2k7 mitogen-activated protein kinase kinase 7 ISO (PMID:9535930) UniProtKB PMID:9535930 NCBI chrNW_004955563:1,352,638...1,361,598
Ensembl chrNW_004955563:1,352,638...1,361,598
JBrowse link
G Map4k3 mitogen-activated protein kinase kinase kinase kinase 3 ISO (PMID:9275185) UniProtKB PMID:9275185 NCBI chrNW_004955441:6,843,066...6,956,443
Ensembl chrNW_004955441:6,846,719...6,956,418
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISO (PMID:14967141) MGI PMID:14967141 NCBI chrNW_004955556:1,593,552...1,705,543
Ensembl chrNW_004955556:1,593,494...1,665,784
JBrowse link
G Men1 menin 1 ISO (PMID:16690369) UniProtKB PMID:16690369 NCBI chrNW_004955422:20,356,491...20,363,374
Ensembl chrNW_004955422:20,356,491...20,363,575
JBrowse link
G Msh6 mutS homolog 6 ISO (MGI:2677657|PMID:14632208) MGI PMID:14632208 MGI:2677657 NCBI chrNW_004955441:14,451,207...14,471,316
Ensembl chrNW_004955441:14,451,307...14,471,227
JBrowse link
G Pclaf PCNA clamp associated factor ISO (PMID:23000965) UniProtKB PMID:23000965 NCBI chrNW_004955450:11,072,778...11,082,687 JBrowse link
G Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 ISO (MGI:2675761|PMID:12952892) MGI PMID:12952892 MGI:2675761 NCBI chrNW_004955402:44,005,517...44,010,722 JBrowse link
G Pml PML nuclear body scaffold ISO (MGI:3580934|PMID:15626733) MGI PMID:15626733 MGI:3580934 NCBI chrNW_004955450:3,654,854...3,692,057
Ensembl chrNW_004955450:3,656,498...3,692,406
JBrowse link
G Primpol primase and DNA directed polymerase ISO (PMID:24240614), (PMID:24267451) UniProtKB PMID:24240614, PMID:24267451 NCBI chrNW_004955403:24,278,727...24,307,312
Ensembl chrNW_004955403:24,279,122...24,303,682
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 ISO (MGI:4822286|PMID:20647423) UniProt PMID:20647423 MGI:4822286 NCBI chrNW_004955426:25,079,718...25,102,090
Ensembl chrNW_004955426:25,079,718...25,102,090
JBrowse link
G Rad18 RAD18 E3 ubiquitin protein ligase ISO (MGI:2448116|PMID:12509447) MGI PMID:12509447 MGI:2448116 NCBI chrNW_004955561:463,586...602,354
Ensembl chrNW_004955561:464,343...599,789
JBrowse link
G Rev1 REV1 DNA directed polymerase ISO (PMID:11485998) UniProtKB PMID:11485998 NCBI chrNW_004955470:5,677,222...5,738,362
Ensembl chrNW_004955470:5,677,222...5,738,362
JBrowse link
G Ro60 Ro60, Y RNA binding protein ISO (MGI:5524977|PMID:14680639)
(MGI:2668758|PMID:12788971)
MGI PMID:12788971, PMID:14680639 MGI:2668758, MGI:5524977 NCBI chrNW_004955406:30,468,775...30,491,206
Ensembl chrNW_004955406:30,468,775...30,491,206
JBrowse link
G Rpain RPA interacting protein ISO (PMID:16135809) MGI PMID:16135809 NCBI chrNW_004955467:10,780,818...10,788,137
Ensembl chrNW_004955467:10,780,910...10,792,668
JBrowse link
G Sprtn SprT-like N-terminal domain ISO (PMID:22681887), (PMID:22894931), (PMID:22902628) UniProtKB PMID:22681887, PMID:22894931, PMID:22902628 NCBI chrNW_004955492:7,463,228...7,476,683
Ensembl chrNW_004955492:7,464,959...7,476,458
JBrowse link
G Tipin TIMELESS interacting protein ISO (MGI:3706226|PMID:17141802) MGI PMID:17141802 MGI:3706226 NCBI chrNW_004955450:9,259,838...9,279,479
Ensembl chrNW_004955450:9,262,717...9,279,401
JBrowse link
G Tp53 tumor protein p53 ISO (MGI:2675761|PMID:12952892)
(MGI:3032464|PMID:14744935)
(MGI:1858868|PMID:10815637), (MGI:3691523|PMID:11092819)
RGD
MGI
PMID:10815637, PMID:11092819, PMID:12952892, PMID:14744935, PMID:17724205 MGI:1858868, MGI:2675761, MGI:3032464, MGI:3691523, RGD:2290562 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
JBrowse link
G Tp53i13 tumor protein p53 inducible protein 13 ISO (PMID:14767535) UniProtKB PMID:14767535 NCBI chrNW_004955481:3,681,495...3,685,051
Ensembl chrNW_004955481:3,681,724...3,685,051
JBrowse link
G Trex1 three prime repair exonuclease 1 ISO (MGI:5908297|PMID:28351661) MGI PMID:28351661 MGI:5908297 NCBI chrNW_004955532:533,877...535,767
Ensembl chrNW_004955532:533,877...535,767
JBrowse link
G Trim32 tripartite motif containing 32 ISO (MGI:5009403|PMID:16816390) BHF-UCL PMID:16816390 MGI:5009403 NCBI chrNW_004955419:11,151,751...11,168,046
Ensembl chrNW_004955419:11,151,751...11,168,041
JBrowse link
G Tyr tyrosinase ISO RGD PMID:6175546 RGD:8694330 NCBI chrNW_004955414:4,244,035...4,314,001
Ensembl chrNW_004955414:4,244,035...4,314,001
JBrowse link
G Uaca uveal autoantigen with coiled-coil domains and ankyrin repeats ISO (MGI:3056865|PMID:15271982) MGI PMID:15271982 MGI:3056865 NCBI chrNW_004955450:6,122,271...6,195,345
Ensembl chrNW_004955450:6,122,439...6,197,177
JBrowse link
G Ube2a ubiquitin conjugating enzyme E2 A ISO (PMID:1717990) UniProtKB PMID:1717990 NCBI chrNW_004955534:411,602...485,964
Ensembl chrNW_004955534:409,947...421,888
JBrowse link
G Ube2b ubiquitin conjugating enzyme E2 B ISO (PMID:1717990) UniProtKB PMID:1717990 NCBI chrNW_004955408:5,552,619...5,572,145
Ensembl chrNW_004955408:5,552,619...5,572,145
JBrowse link
G Ube4b ubiquitination factor E4B ISO (PMID:11802788) UniProtKB PMID:11802788 NCBI chrNW_004955486:3,518,873...3,626,036
Ensembl chrNW_004955486:3,518,740...3,626,121
JBrowse link
G Usf1 upstream transcription factor 1 ISO (MGI:3525429|PMID:15358786) BHF-UCL PMID:15358786 MGI:3525429 NCBI chrNW_004955468:12,814,810...12,821,383
Ensembl chrNW_004955468:12,814,810...12,821,383
JBrowse link
G Usp1 ubiquitin specific peptidase 1 ISO (PMID:18082604) UniProtKB PMID:18082604 NCBI chrNW_004955423:27,236,242...27,254,064
Ensembl chrNW_004955423:27,237,003...27,251,892
JBrowse link
G Uvssa UV stimulated scaffold protein A ISO (PMID:22466610), (PMID:22466611), (PMID:22466612) UniProtKB PMID:22466610, PMID:22466611, PMID:22466612 NCBI chrNW_004955514:725,257...754,274
Ensembl chrNW_004955514:728,522...756,348
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor ISO (MGI:3655576|PMID:10843671) MGI PMID:10843671 MGI:3655576 NCBI chrNW_004955419:27,751,042...27,774,917
Ensembl chrNW_004955419:27,751,043...27,774,917
JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 ISO (PMID:22704558) UniProtKB PMID:22704558 NCBI chrNW_004955440:2,683,041...2,907,859
Ensembl chrNW_004955440:2,680,787...2,888,345
JBrowse link
response to UV-A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 ISO (PMID:18483258) BHF-UCL PMID:18483258 NCBI chrNW_004955538:3,208,711...3,224,386
Ensembl chrNW_004955538:3,208,710...3,229,904
JBrowse link
G Ccnd1 cyclin D1 ISO (PMID:18483258) BHF-UCL PMID:18483258 NCBI chrNW_004955422:16,449,921...16,462,676
Ensembl chrNW_004955422:16,448,770...16,463,300
JBrowse link
G Cryaa crystallin alpha A ISO (MGI:1321356|PMID:9813033) MGI PMID:9813033 MGI:1321356 NCBI chrNW_004955407:38,880,088...38,892,946 JBrowse link
G Egfr epidermal growth factor receptor ISO (PMID:18483258) BHF-UCL PMID:18483258 NCBI chrNW_004955456:321,222...456,431 JBrowse link
response to UV-B term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2 apoptosis regulator ISO (MGI:1330635|PMID:10200548) MGI PMID:10200548 MGI:1330635 NCBI chrNW_004955402:46,911,125...47,084,214
Ensembl chrNW_004955402:46,916,266...47,084,485
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (MGI:1859141|PMID:10850428), (MGI:3699047|PMID:17145777) MGI PMID:10850428, PMID:17145777 MGI:1859141, MGI:3699047 NCBI chrNW_004955556:745,175...812,215
Ensembl chrNW_004955556:748,231...813,133
JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 ISO (MGI:3590574|PMID:12660172) MGI PMID:12660172 MGI:3590574 NCBI chrNW_004955407:38,136,386...38,142,587
Ensembl chrNW_004955407:38,136,386...38,143,479
JBrowse link
G Il12a interleukin 12A ISO (PMID:8992506) UniProtKB PMID:8992506 NCBI chrNW_004955448:10,611,131...10,617,911 JBrowse link
G Il12b interleukin 12B ISO (PMID:8992506) UniProtKB PMID:8992506 NCBI chrNW_004955408:13,302,506...13,316,300
Ensembl chrNW_004955408:13,304,219...13,312,620
JBrowse link
G Ivl involucrin ISO (PMID:16639001) UniProtKB PMID:16639001 NCBI chrNW_004955592:522,730...525,728 JBrowse link
G Msh2 mutS homolog 2 ISO (MGI:3487309|PMID:15166087) MGI PMID:15166087 MGI:3487309 NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit ISO (PMID:15616591) UniProtKB PMID:15616591 NCBI chrNW_004955422:19,602,930...19,612,263
Ensembl chrNW_004955422:19,603,345...19,611,516
JBrowse link
G Tp53 tumor protein p53 ISO RGD PMID:22559303 RGD:8547754 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO (MGI:3034118|PMID:15010313) MGI PMID:15010313 MGI:3034118 NCBI chrNW_004955429:16,935,901...16,968,285
Ensembl chrNW_004955429:16,935,901...16,955,845
JBrowse link
response to UV-C term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bak1 BCL2 antagonist/killer 1 ISO RGD PMID:19520675 RGD:2316118 NCBI chrNW_004955437:2,036,415...2,041,997
Ensembl chrNW_004955437:2,036,415...2,041,997
JBrowse link
G Bcl3 BCL3 transcription coactivator ISO (PMID:16384933) UniProtKB PMID:16384933 NCBI chrNW_004955555:1,898,280...1,911,466
Ensembl chrNW_004955555:1,856,250...1,911,466
JBrowse link
G Brca2 BRCA2 DNA repair associated ISO (MGI:1203345|PMID:9660919) MGI PMID:9660919 MGI:1203345 NCBI chrNW_004955431:13,449,287...13,526,878
Ensembl chrNW_004955431:13,449,543...13,527,432
JBrowse link
G Dcun1d3 defective in cullin neddylation 1 domain containing 3 ISO (PMID:18823379) UniProtKB PMID:18823379 NCBI chrNW_004955493:153,226...186,824
Ensembl chrNW_004955493:153,226...186,451
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease ISO (PMID:17208056) UniProtKB PMID:17208056 NCBI chrNW_004955404:8,294,506...8,321,505 JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 ISO (MGI:3590574|PMID:12660172) MGI PMID:12660172 MGI:3590574 NCBI chrNW_004955407:38,136,386...38,142,587
Ensembl chrNW_004955407:38,136,386...38,143,479
JBrowse link
G Map3k4 mitogen-activated protein kinase kinase kinase 4 ISO (PMID:9305639) UniProtKB PMID:9305639 NCBI chrNW_004955439:20,144,059...20,263,885
Ensembl chrNW_004955439:20,144,059...20,263,879
JBrowse link
G Polh DNA polymerase eta ISO (PMID:17563354) UniProtKB PMID:17563354 NCBI chrNW_004955437:9,392,484...9,409,186
Ensembl chrNW_004955437:9,397,141...9,414,042
JBrowse link
G Wrn WRN RecQ like helicase ISO (PMID:17563354) UniProtKB PMID:17563354 NCBI chrNW_004955463:7,495,243...7,633,532
Ensembl chrNW_004955463:7,525,100...7,633,596
JBrowse link
G Yy1 YY1 transcription factor ISO (PMID:18026119)
(MGI:5009388|PMID:18026119)
UniProtKB
UniProt
PMID:18026119 MGI:5009388 NCBI chrNW_004955438:21,341,374...21,377,674 JBrowse link
rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603
JBrowse link
G Opn4 opsin 4 ISO (MGI:4438311|PMID:19793992) MGI PMID:19793992 MGI:4438311 NCBI chrNW_004955510:5,723,804...5,736,070
Ensembl chrNW_004955510:5,724,120...5,736,135
JBrowse link
G Pcp2 Purkinje cell protein 2 ISO (MGI:3817370|PMID:18768681) MGI PMID:18768681 MGI:3817370 NCBI chrNW_004955563:1,625,249...1,628,776
Ensembl chrNW_004955563:1,625,254...1,628,776
JBrowse link
G Rho rhodopsin ISO RGD PMID:8814134 RGD:6893595 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982
JBrowse link
short-day photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npy neuropeptide Y ISO RGD PMID:19490367 RGD:6480663 NCBI chrNW_004955410:26,348,388...26,355,232
Ensembl chrNW_004955410:26,348,504...26,355,297
JBrowse link
UV protection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cat catalase ISO (PMID:16644728), (PMID:17053817) UniProtKB PMID:16644728, PMID:17053817 NCBI chrNW_004955422:11,783,973...11,826,970
Ensembl chrNW_004955422:11,781,835...11,827,464
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (MGI:1342943|PMID:10454634)
(MGI:63544|PMID:8275084)
(MGI:3692264|PMID:16682947)
MGI PMID:8275084, PMID:10454634, PMID:16682947 MGI:1342943, MGI:3692264, MGI:63544 NCBI chrNW_004955555:2,393,510...2,430,180
Ensembl chrNW_004955555:2,393,278...2,406,582
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO (PMID:2835663)
(MGI:1267106|PMID:9651581)
MGI PMID:2835663, PMID:9651581 MGI:1267106 NCBI chrNW_004955555:2,355,005...2,369,599
Ensembl chrNW_004955555:2,355,005...2,369,599
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO (MGI:50153|PMID:1747940) MGI PMID:1747940 MGI:50153 NCBI chrNW_004955459:3,210,936...3,238,401
Ensembl chrNW_004955459:3,210,479...3,242,576
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (MGI:3027419|PMID:14729965) MGI PMID:14729965 MGI:3027419 NCBI chrNW_004955442:4,833,453...4,861,201
Ensembl chrNW_004955442:4,831,721...4,861,122
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease ISO (PMID:7510366)
(MGI:77034|PMID:7510366)
(MGI:82906|PMID:8703115)
MGI PMID:7510366, PMID:8703115 MGI:77034, MGI:82906 NCBI chrNW_004955404:8,294,506...8,321,505 JBrowse link
G Gpx1 glutathione peroxidase 1 ISO (PMID:17097614) BHF-UCL PMID:17097614 NCBI chrNW_004955532:1,298,336...1,298,830 JBrowse link
G Mfap4 microfibril associated protein 4 ISO (PMID:22355679) BHF-UCL PMID:22355679 NCBI chrNW_004955467:378,389...381,593
Ensembl chrNW_004955467:377,887...381,593
JBrowse link
G Sdf4 stromal cell derived factor 4 ISO PMID:18355758 BHF-UCL PMID:18355758 RGD:8554427 NCBI chrNW_004955486:9,555,773...9,565,310
Ensembl chrNW_004955486:9,555,364...9,567,340
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor ISO (PMID:1601884) CAFA PMID:1601884 NCBI chrNW_004955419:27,751,042...27,774,917
Ensembl chrNW_004955419:27,751,043...27,774,917
JBrowse link
UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr5 actin related protein 5 ISO (PMID:20855601) UniProtKB PMID:20855601 NCBI chrNW_004955445:17,991,969...18,024,525
Ensembl chrNW_004955445:17,991,969...18,024,818
JBrowse link
G Cul4b cullin 4B ISO (PMID:22334663) UniProtKB PMID:22334663 NCBI chrNW_004955572:1,308,491...1,365,147 JBrowse link
G Ddb1 damage specific DNA binding protein 1 ISO (PMID:22334663) UniProtKB PMID:22334663 NCBI chrNW_004955511:6,209,777...6,233,594
Ensembl chrNW_004955511:6,209,777...6,233,594
JBrowse link
G Ddb2 damage specific DNA binding protein 2 ISO (PMID:22334663) UniProtKB PMID:22334663 NCBI chrNW_004955422:961,602...977,066
Ensembl chrNW_004955422:961,893...974,338
JBrowse link
G Ino80 INO80 complex ATPase subunit ISO (PMID:20855601) UniProtKB PMID:20855601 NCBI chrNW_004955416:7,870,521...8,020,862
Ensembl chrNW_004955416:7,870,258...7,961,812
JBrowse link
G LOC102022141 histone H2A type 1-D ISO (PMID:22334663) UniProtKB PMID:22334663 NCBI chrNW_004955581:93,494...100,249 JBrowse link
G Sirt1 sirtuin 1 ISO (PMID:20670893) CACAO PMID:20670893 NCBI chrNW_004955425:20,280,725...20,307,663
Ensembl chrNW_004955425:20,279,963...20,307,663
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO (PMID:8077226)
(MGI:5427285|PMID:22431748)
CACAO
MGI
PMID:8077226, PMID:22431748 MGI:5427285 NCBI chrNW_004955429:16,935,901...16,968,285
Ensembl chrNW_004955429:16,935,901...16,955,845
JBrowse link
UV-damage excision repair, DNA incision term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO (MGI:3697767|PMID:17049932) MGI PMID:17049932 MGI:3697767 NCBI chrNW_004955429:16,935,901...16,968,285
Ensembl chrNW_004955429:16,935,901...16,955,845
JBrowse link
visual behavior term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dynlrb1 dynein light chain roadblock-type 1 ISO PMID:10816553 UniProt PMID:10816553 RGD:633064 NCBI chrNW_004955422:26,787,879...26,807,901
Ensembl chrNW_004955422:26,787,699...26,807,901
JBrowse link
G Slc1a2 solute carrier family 1 member 2 ISO (MGI:3608234|PMID:16197522) MGI PMID:16197522 MGI:3608234 NCBI chrNW_004955422:10,929,987...11,082,220
Ensembl chrNW_004955422:10,930,296...11,073,032
JBrowse link
visual learning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca7 ATP binding cassette subfamily A member 7 ISO (MGI:5774886|PMID:27030769) ARUK-UCL PMID:27030769 MGI:5774886 NCBI chrNW_004955495:6,818,002...6,838,177
Ensembl chrNW_004955495:6,815,562...6,836,772
JBrowse link
G Abcc8 ATP binding cassette subfamily C member 8 ISO RGD PMID:24114458 RGD:10003028 NCBI chrNW_004955414:32,216,243...32,289,028
Ensembl chrNW_004955414:32,216,196...32,289,053
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase ISO (MGI:5315777|PMID:22357865) MGI PMID:22357865 MGI:5315777 NCBI chrNW_004955406:18,435,984...18,527,967
Ensembl chrNW_004955406:18,437,672...18,527,698
JBrowse link
G Adam2 ADAM metallopeptidase domain 2 ISO (MGI:3620328|PMID:16504143) MGI PMID:16504143 MGI:3620328 NCBI chrNW_004955403:50,046,262...50,115,004
Ensembl chrNW_004955403:50,046,004...50,117,201
JBrowse link
G Adra1b adrenoceptor alpha 1B ISO (MGI:1932224|PMID:11222061) MGI PMID:11222061 MGI:1932224 NCBI chrNW_004955408:13,883,574...13,937,798
Ensembl chrNW_004955408:13,883,574...13,937,709
JBrowse link
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 ISO (MGI:5617942|PMID:20203623) MGI PMID:20203623 MGI:5617942 NCBI chrNW_004955519:2,351,754...2,370,650 JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 ISO (MGI:3522016|PMID:14689444) MGI PMID:14689444 MGI:3522016 NCBI chrNW_004955414:22,121,867...22,137,849
Ensembl chrNW_004955414:22,117,470...22,137,849
JBrowse link
G App amyloid beta precursor protein ISO (MGI:1344078|PMID:10338291) MGI PMID:10338291 MGI:1344078 NCBI chrNW_004955407:25,725,259...25,973,582
Ensembl chrNW_004955407:25,722,849...25,974,268
JBrowse link
G Atp1a2 ATPase Na+/K+ transporting subunit alpha 2 ISO (MGI:3696486|PMID:17234593) MGI PMID:17234593 MGI:3696486 NCBI chrNW_004955468:11,898,786...11,924,341
Ensembl chrNW_004955468:11,898,915...11,922,400
JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 ISO (MGI:3696486|PMID:17234593) MGI PMID:17234593 MGI:3696486 NCBI chrNW_004955555:869,508...892,510 JBrowse link
G Atxn1 ataxin 1 ISO (MGI:1270078|PMID:9651231)
(MGI:4818500|PMID:20628574)
MGI PMID:9651231, PMID:20628574 MGI:1270078, MGI:4818500 NCBI chrNW_004955483:9,159,877...9,559,453
Ensembl chrNW_004955483:9,536,261...9,552,321
JBrowse link
G B4galt2 beta-1,4-galactosyltransferase 2 ISO (MGI:3849110|PMID:19265195) MGI PMID:19265195 MGI:3849110 NCBI chrNW_004955537:3,506,836...3,516,436
Ensembl chrNW_004955537:3,505,596...3,516,436
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase ISO (MGI:3620005|PMID:16342120) MGI PMID:16342120 MGI:3620005 NCBI chrNW_004955494:2,567,238...2,712,708 JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C ISO (MGI:3607037|PMID:16251435) MGI PMID:16251435 MGI:3607037 NCBI chrNW_004955454:4,573,647...5,199,046
Ensembl chrNW_004955454:4,490,923...5,198,506
JBrowse link
G Cacna1e calcium voltage-gated channel subunit alpha1 E ISO (MGI:1932239|PMID:11263998) MGI PMID:11263998 MGI:1932239 NCBI chrNW_004955406:20,356,564...20,824,679
Ensembl chrNW_004955406:20,510,954...20,816,678
JBrowse link
G Cck cholecystokinin ISO RGD PMID:12450740 RGD:1626100 NCBI chrNW_004955420:28,438,806...28,443,458
Ensembl chrNW_004955420:28,438,806...28,443,458
JBrowse link
G Cdk5 cyclin dependent kinase 5 ISO (MGI:3720432|PMID:17529984) MGI PMID:17529984 MGI:3720432 NCBI chrNW_004955491:5,491,744...5,497,280
Ensembl chrNW_004955491:5,491,744...5,497,280
JBrowse link
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit ISO (PMID:15964197)
(MGI:1332977|PMID:10064590), (MGI:3584096|PMID:12876201)
UniProtKB
MGI
PMID:10064590, PMID:12876201, PMID:15964197 MGI:1332977, MGI:3584096 NCBI chrNW_004955545:1,065,457...1,077,056
Ensembl chrNW_004955545:1,065,457...1,077,526
JBrowse link
G Ckap5 cytoskeleton associated protein 5 ISO (MGI:5546446|PMID:23936366) MGI PMID:23936366 MGI:5546446 NCBI chrNW_004955422:1,266,686...1,354,323
Ensembl chrNW_004955422:1,279,158...1,353,894
JBrowse link
G Creb1 cAMP responsive element binding protein 1 ISO RGD PMID:25031400 RGD:10059390 NCBI chrNW_004955457:7,424,403...7,490,630
Ensembl chrNW_004955457:7,431,736...7,491,149
JBrowse link
G Crhr1 corticotropin releasing hormone receptor 1 ISO postnatal blockade improves adult learning and memory RGD PMID:15932935 RGD:1626241 NCBI chrNW_004955478:10,380,185...10,390,838 JBrowse link
G Ctns cystinosin, lysosomal cystine transporter ISO (MGI:3848688|PMID:17977621) MGI PMID:17977621 MGI:3848688 NCBI chrNW_004955467:13,151,663...13,169,005
Ensembl chrNW_004955467:13,151,957...13,168,696
JBrowse link
G Dbh dopamine beta-hydroxylase ISO (MGI:893736|PMID:9189272) MGI PMID:9189272 MGI:893736 NCBI chrNW_004955513:2,918,085...2,932,481
Ensembl chrNW_004955513:2,918,286...2,932,247
JBrowse link
G Dcdc2 doublecortin domain containing 2 ISO (MGI:5442271|PMID:21883923), (MGI:5698331|PMID:25130614) MGI PMID:21883923, PMID:25130614 MGI:5442271, MGI:5698331 NCBI chrNW_004955483:2,608,063...2,783,872
Ensembl chrNW_004955483:2,607,925...2,778,799
JBrowse link
G Ddhd2 DDHD domain containing 2 ISO (MGI:5608822|PMID:25267624) MGI PMID:25267624 MGI:5608822 NCBI chrNW_004955463:13,836,401...13,856,430
Ensembl chrNW_004955463:13,836,409...13,856,431
JBrowse link
G Deaf1 DEAF1 transcription factor ISO (MGI:5576037|PMID:24726472) UniProt PMID:24726472 MGI:5576037 NCBI chrNW_004955476:11,398,187...11,422,633
Ensembl chrNW_004955476:11,398,448...11,423,654
JBrowse link
G Drd1 dopamine receptor D1 ISO (MGI:1274984|PMID:9692749), (MGI:3607825|PMID:10585522)
(MGI:3607822|PMID:10884517)
(MGI:3530728|PMID:15684065)
MGI PMID:9692749, PMID:10585522, PMID:10884517, PMID:15684065 MGI:1274984, MGI:3530728, MGI:3607822, MGI:3607825 NCBI chrNW_004955408:28,003,229...28,006,595
Ensembl chrNW_004955408:28,003,229...28,006,595
JBrowse link
G Drd2 dopamine receptor D2 ISO (MGI:3626135|PMID:12097513) MGI PMID:12097513 MGI:3626135 NCBI chrNW_004955412:15,054,255...15,114,558
Ensembl chrNW_004955412:15,054,038...15,114,573
JBrowse link
G Drd3 dopamine receptor D3 ISO (MGI:3626135|PMID:12097513) MGI PMID:12097513 MGI:3626135 NCBI chrNW_004955427:14,219,519...14,252,178
Ensembl chrNW_004955427:14,219,594...14,252,178
JBrowse link
G Drd5 dopamine receptor D5 ISO RGD PMID:17142305 RGD:1600982 NCBI chrNW_004955514:5,450,495...5,452,282 JBrowse link
G Foxb1 forkhead box B1 ISO (MGI:3589689|PMID:15654859) UniProt PMID:15654859 MGI:3589689 NCBI chrNW_004955450:14,867,941...14,902,990 JBrowse link
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 ISO (MGI:3703316|PMID:17313573)
(MGI:86085|PMID:9054942)
(MGI:1858680|PMID:10818139)
(MGI:84850|PMID:8980238)
(MGI:3623866|PMID:16611824), (MGI:893741|PMID:9246451)
MGI PMID:8980238, PMID:9054942, PMID:9246451, PMID:10818139, PMID:16611824, PMID:17313573 MGI:1858680, MGI:3623866, MGI:3703316, MGI:84850, MGI:86085, MGI:893741 NCBI chrNW_004955513:5,154,864...5,178,636
Ensembl chrNW_004955513:5,154,864...5,178,636
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A ISO (MGI:70176|PMID:7816096) MGI PMID:7816096 MGI:70176 NCBI chrNW_004955442:8,171,114...8,565,187
Ensembl chrNW_004955442:8,174,232...8,562,059
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO (MGI:2676530|PMID:12972594) MGI PMID:12972594 MGI:2676530 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497
JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase ISO (MGI:3610917|PMID:12409258) MGI PMID:12409258 MGI:3610917 NCBI chrNW_004955425:25,362,165...25,380,611
Ensembl chrNW_004955425:25,359,884...25,380,745
JBrowse link
G Hrh1 histamine receptor H1 ISO (MGI:3703474|PMID:17145090) MGI PMID:17145090 MGI:3703474 NCBI chrNW_004955429:14,022,332...14,069,931
Ensembl chrNW_004955429:14,067,405...14,068,853
JBrowse link
G Hrh2 histamine receptor H2 ISO (MGI:3703474|PMID:17145090) MGI PMID:17145090 MGI:3703474 NCBI chrNW_004955408:28,186,316...28,225,146
Ensembl chrNW_004955408:28,186,249...28,229,411
JBrowse link
G Htt huntingtin ISO (MGI:73644|PMID:7774020) MGI PMID:7774020 MGI:73644 NCBI chrNW_004955514:1,906,189...2,042,357
Ensembl chrNW_004955514:1,906,502...2,038,889
JBrowse link
G Idua alpha-L-iduronidase ISO (MGI:3771256|PMID:18022143) MGI PMID:18022143 MGI:3771256 NCBI chrNW_004955514:474,830...488,007
Ensembl chrNW_004955514:475,731...488,007
JBrowse link
G Ift20 intraflagellar transport 20 ISO (MGI:5139967|PMID:21734285) MGI PMID:21734285 MGI:5139967 NCBI chrNW_004955481:4,799,548...4,807,751
Ensembl chrNW_004955481:4,799,548...4,807,751
JBrowse link
G Itgb1 integrin subunit beta 1 ISO (MGI:5315777|PMID:22357865) MGI PMID:22357865 MGI:5315777 NCBI chrNW_004955462:4,454,809...4,483,227
Ensembl chrNW_004955462:4,454,809...4,484,842
JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase ISO RGD PMID:11112797 RGD:2292520 NCBI chrNW_004955447:16,149,014...16,226,151
Ensembl chrNW_004955447:16,148,605...16,226,734
JBrowse link
G Kmt2a lysine methyltransferase 2A ISO (MGI:5638946|PMID:25834037) MGI PMID:25834037 MGI:5638946 NCBI chrNW_004955412:19,586,435...19,670,149 JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO (MGI:2157992|PMID:11793011) MGI PMID:11793011 MGI:2157992 NCBI chrNW_004955413:20,298,852...20,328,756
Ensembl chrNW_004955413:20,298,824...20,328,758
JBrowse link
G Lrrn4 leucine rich repeat neuronal 4 ISO (MGI:5428894|PMID:15870286) MGI PMID:15870286 MGI:5428894 NCBI chrNW_004955415:16,413,666...16,423,605
Ensembl chrNW_004955415:16,411,369...16,423,814
JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO (MGI:3611151|PMID:16399702) MGI PMID:16399702 MGI:3611151 NCBI chrNW_004955580:674,014...737,586
Ensembl chrNW_004955580:679,109...735,288
JBrowse link
G Meis2 Meis homeobox 2 ISO (MGI:5638946|PMID:25834037) MGI PMID:25834037 MGI:5638946 NCBI chrNW_004955416:4,104,114...4,311,791 JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO RGD PMID:20599569 RGD:10041021 NCBI chrNW_004955486:2,487,642...2,599,694
Ensembl chrNW_004955486:2,487,642...2,599,694
JBrowse link
G Ndrg4 NDRG family member 4 ISO (MGI:5286035|PMID:21636852) BHF-UCL PMID:21636852 MGI:5286035 NCBI chrNW_004955433:15,914,884...15,933,000
Ensembl chrNW_004955433:15,914,823...15,933,659
JBrowse link
G Neto1 neuropilin and tolloid like 1 ISO (MGI:3836361|PMID:19243221) UniProt PMID:19243221 MGI:3836361 NCBI chrNW_004955402:56,262,137...56,376,105
Ensembl chrNW_004955402:56,262,137...56,376,142
JBrowse link
G Nf1 neurofibromin 1 ISO (MGI:86085|PMID:9054942)
(MGI:1932770|PMID:11279521)
(MGI:3610622|PMID:16271875)
(MGI:2157992|PMID:11793011)
MGI PMID:9054942, PMID:11279521, PMID:11793011, PMID:16271875 MGI:1932770, MGI:2157992, MGI:3610622, MGI:86085 NCBI chrNW_004955481:6,145,855...6,404,179
Ensembl chrNW_004955481:6,145,855...6,404,179
JBrowse link
G Nlgn3 neuroligin 3 ISO (MGI:3758357|PMID:17823315) MGI PMID:17823315 MGI:3758357 NCBI chrNW_004955475:10,712,170...10,735,857
Ensembl chrNW_004955475:10,712,170...10,735,857
JBrowse link
G Nog noggin ISO RGD PMID:12740172 RGD:10423996 NCBI chrNW_004955451:6,192,368...6,193,766
Ensembl chrNW_004955451:6,193,042...6,193,740
JBrowse link
G Nptn neuroplastin ISO RGD PMID:21480899 RGD:9835376 NCBI chrNW_004955450:3,938,403...4,002,694
Ensembl chrNW_004955450:3,938,403...4,004,059
JBrowse link
G Nts neurotensin ISO RGD PMID:20219557 RGD:9743918 NCBI chrNW_004955405:23,696,258...23,758,487
Ensembl chrNW_004955405:23,748,280...23,758,529
JBrowse link
G Pde1b phosphodiesterase 1B ISO (MGI:2181913|PMID:12077213)
(MGI:3761427|PMID:17010100)
MGI PMID:12077213, PMID:17010100 MGI:2181913, MGI:3761427 NCBI chrNW_004955458:1,791,090...1,819,261
Ensembl chrNW_004955458:1,791,090...1,821,813
JBrowse link
G Pde8b phosphodiesterase 8B ISO (MGI:5525232|PMID:22925203) MGI PMID:22925203 MGI:5525232 NCBI chrNW_004955425:23,512,865...23,614,326 JBrowse link
G Pias1 protein inhibitor of activated STAT 1 ISO RGD PMID:25031400 RGD:10059390 NCBI chrNW_004955450:7,896,741...7,991,045
Ensembl chrNW_004955450:7,896,741...7,991,027
JBrowse link
G Ppp1r1b protein phosphatase 1 regulatory inhibitor subunit 1B ISO (MGI:3761427|PMID:17010100) MGI PMID:17010100 MGI:3761427 NCBI chrNW_004955451:14,378,186...14,394,910
Ensembl chrNW_004955451:14,389,533...14,394,169
JBrowse link
G Ptprz1 protein tyrosine phosphatase receptor type Z1 ISO RGD PMID:12737936 RGD:9590120 NCBI chrNW_004955479:3,611,658...3,734,225
Ensembl chrNW_004955479:3,624,993...3,733,183
JBrowse link
G Rag1 recombination activating 1 ISO RGD PMID:22964459 RGD:12907572 NCBI chrNW_004955422:9,891,878...9,928,569
Ensembl chrNW_004955422:9,891,878...9,919,504
JBrowse link
G Rgs14 regulator of G protein signaling 14 ISO PMID:19574389 UniProt PMID:19574389 RGD:8553361 NCBI chrNW_004955408:29,602,654...29,616,793
Ensembl chrNW_004955408:29,602,820...29,616,210
JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A ISO (MGI:3692154|PMID:16221497) MGI PMID:16221497 MGI:3692154 NCBI chrNW_004955476:11,827,004...11,833,495
Ensembl chrNW_004955476:11,827,004...11,833,162
JBrowse link
G Sct secretin ISO (MGI:4939559|PMID:21159798) MGI PMID:21159798 MGI:4939559 NCBI chrNW_004955476:11,433,857...11,434,662
Ensembl chrNW_004955476:11,433,969...11,434,574
JBrowse link
G Sgk1 serum/glucocorticoid regulated kinase 1 ISO both spacial learning and enrichment-induced spatial learning facilitation RGD PMID:14656333 RGD:1642778 NCBI chrNW_004955439:2,399,992...2,406,587 JBrowse link
G Slc7a11 solute carrier family 7 member 11 ISO (MGI:4948153|PMID:21490221)
(MGI:5562570|PMID:24548853)
MGI PMID:21490221, PMID:24548853 MGI:4948153, MGI:5562570 NCBI chrNW_004955428:5,238,460...5,309,085
Ensembl chrNW_004955428:5,237,865...5,309,085
JBrowse link
G Syngap1 synaptic Ras GTPase activating protein 1 ISO (MGI:3580530|PMID:12427827) MGI PMID:12427827 MGI:3580530 NCBI chrNW_004955437:1,950,559...1,981,004
Ensembl chrNW_004955437:1,950,602...1,979,251
JBrowse link
G Synpo synaptopodin ISO (MGI:2673780|PMID:12928494) SynGO-UCL PMID:12928494 MGI:2673780 NCBI chrNW_004955415:3,929,781...3,977,769
Ensembl chrNW_004955415:3,932,192...3,990,022
JBrowse link
G Tafa2 TAFA chemokine like family member 2 ISO (MGI:6282943|PMID:30137205) UniProt PMID:30137205 MGI:6282943 NCBI chrNW_004955458:8,935,792...9,351,358 JBrowse link
G Tanc1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 ISO (MGI:4845797|PMID:21068316) MGI PMID:21068316 MGI:4845797 NCBI chrNW_004955449:14,353,693...14,586,010
Ensembl chrNW_004955449:14,353,693...14,530,861
JBrowse link
G Ttc36 tetratricopeptide repeat domain 36 ISO (MGI:6362140|PMID:31537781) MGI PMID:31537781 MGI:6362140 NCBI chrNW_004955412:19,670,590...19,672,495 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11892
    response to stimulus 6367
      response to abiotic stimulus 1318
        response to radiation 490
          response to light stimulus 321
            cellular response to light stimulus + 104
            cone photoresponse recovery 0
            de-etiolation 0
            detection of light stimulus + 41
            energy quenching + 0
            photoperiodism + 28
            photoprotection 0
            phototaxis + 0
            response to UV + 151
            response to blue light + 5
            response to light intensity + 15
            response to red or far red light + 1
            visual behavior + 75
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.