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ONTOLOGY REPORT - ANNOTATIONS


Term:response to light stimulus
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Accession:GO:0009416 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.


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response to light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AANAT aralkylamine N-acetyltransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:76,453,351...76,470,797
Ensembl chr17:76,453,351...76,470,117
JBrowse link
G ASNS asparagine synthetase (glutamine-hydrolyzing) IEA Ensembl GO_REF:0000107 NCBI chr 7:97,851,677...97,928,441
Ensembl chr 7:97,851,677...97,872,542
JBrowse link
G BDNF brain derived neurotrophic factor ISO RGD PMID:17640634 RGD:8655603 NCBI chr11:27,654,893...27,722,030
Ensembl chr11:27,654,893...27,722,058
JBrowse link
G BHLHE40 basic helix-loop-helix family member e40 ISO (PMID:15038852)
PMID:12397359
BHF-UCL
UniProt
PMID:12397359, PMID:15038852 RGD:625726 NCBI chr 3:4,979,420...4,985,323
Ensembl chr 3:4,979,437...4,985,323
JBrowse link
G CLOCK clock circadian regulator ISO RGD PMID:10471199 RGD:10401879 NCBI chr 4:55,427,903...55,547,138
Ensembl chr 4:55,427,903...55,546,909
JBrowse link
G CLU clusterin ISO RGD PMID:11803476 RGD:9062370 NCBI chr 8:27,596,917...27,614,700
Ensembl chr 8:27,596,917...27,614,700
JBrowse link
G COPS3 COP9 signalosome subunit 3 TAS (PMID:9535219) PINC PMID:9535219 NCBI chr17:17,246,616...17,281,303
Ensembl chr17:17,246,616...17,281,273
JBrowse link
G CRY1 cryptochrome circadian regulator 1 ISS UniProt GO_REF:0000024 NCBI chr12:106,991,364...107,093,872
Ensembl chr12:106,991,364...107,093,549
JBrowse link
G CRY2 cryptochrome circadian regulator 2 IMP
ISS
(PMID:15751956) CAFA
UniProt
PMID:15751956 GO_REF:0000024 NCBI chr11:45,847,118...45,883,244
Ensembl chr11:45,847,118...45,883,248
JBrowse link
G DNM2 dynamin 2 IEA Ensembl GO_REF:0000107 NCBI chr19:10,718,079...10,831,903
Ensembl chr19:10,718,079...10,833,488
JBrowse link
G DRD2 dopamine receptor D2 ISS BHF-UCL GO_REF:0000024 NCBI chr11:113,409,605...113,475,398
Ensembl chr11:113,409,605...113,475,691
JBrowse link
G DUSP1 dual specificity phosphatase 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:172,768,096...172,771,195
Ensembl chr 5:172,768,096...172,771,195
JBrowse link
G DYNLRB1 dynein light chain roadblock-type 1 ISO RGD PMID:10816553 RGD:633064 NCBI chr20:34,515,602...34,540,958
Ensembl chr20:34,516,409...34,540,958
JBrowse link
G ELK1 ETS transcription factor ELK1 IEA Ensembl GO_REF:0000107 NCBI chr  X:47,635,520...47,650,604
Ensembl chr  X:47,635,521...47,650,604
JBrowse link
G FECH ferrochelatase TAS (PMID:1376018) PINC PMID:1376018 NCBI chr18:57,544,377...57,586,708
Ensembl chr18:57,544,389...57,586,702
Ensembl chr18:57,544,389...57,586,702
JBrowse link
G FMR1 FMRP translational regulator 1 ISO RGD PMID:15564573 RGD:1601175 NCBI chr  X:147,911,919...147,951,125
Ensembl chr  X:147,911,951...147,951,125
Ensembl chr  X:147,911,951...147,951,125
JBrowse link
G FOS Fos proto-oncogene, AP-1 transcription factor subunit IEA Ensembl GO_REF:0000107 NCBI chr14:75,278,828...75,282,230
Ensembl chr14:75,278,826...75,282,230
JBrowse link
G FOSL2 FOS like 2, AP-1 transcription factor subunit ISO RGD PMID:11146118 RGD:2293791 NCBI chr 2:28,392,855...28,417,317
Ensembl chr 2:28,392,448...28,417,317
JBrowse link
G GH1 growth hormone 1 ISO RGD PMID:19091612 RGD:2315626 NCBI chr17:63,917,203...63,918,839
Ensembl chr17:63,917,200...63,918,839
JBrowse link
G GJA10 gap junction protein alpha 10 ISO (MGI:3654563|PMID:16820008) MGI PMID:16820008 MGI:3654563 NCBI chr 6:89,894,469...89,896,120
Ensembl chr 6:89,894,469...89,921,760
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 ISS UniProtKB
AgBase
GO_REF:0000024 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696
JBrowse link
G GRIN2A glutamate ionotropic receptor NMDA type subunit 2A ISO RGD PMID:19850826 RGD:2325946 NCBI chr16:9,753,404...10,182,928
Ensembl chr16:9,753,404...10,182,928
Ensembl chr16:9,753,404...10,182,928
JBrowse link
G GRK1 G protein-coupled receptor kinase 1 ISO (MGI:1334014|PMID:10097103) RGD
MGI
PMID:3950623, PMID:10097103 MGI:1334014, RGD:1600007 NCBI chr13:113,645,771...113,737,736
Ensembl chr13:113,667,219...113,737,736
JBrowse link
G JUNB JunB proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:11146118 RGD:2293791 NCBI chr19:12,791,486...12,793,315
Ensembl chr19:12,791,486...12,793,315
JBrowse link
G JUND JunD proto-oncogene, AP-1 transcription factor subunit IEA Ensembl GO_REF:0000107 NCBI chr19:18,279,694...18,281,622
Ensembl chr19:18,279,694...18,281,622
JBrowse link
G KMT2A lysine methyltransferase 2A ISO (MGI:5638946|PMID:25834037) MGI PMID:25834037 MGI:5638946 NCBI chr11:118,436,492...118,526,832
Ensembl chr11:118,436,490...118,526,832
JBrowse link
G MAPK10 mitogen-activated protein kinase 10 ISS UniProtKB GO_REF:0000024 NCBI chr 4:86,010,405...86,594,625
Ensembl chr 4:85,990,007...86,594,625
JBrowse link
G MAT2A methionine adenosyltransferase 2A ISO RGD PMID:15504733 RGD:1598692 NCBI chr 2:85,539,168...85,545,281
Ensembl chr 2:85,539,168...85,545,281
JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 ISO RGD PMID:17640634 RGD:8655603 NCBI chr 9:84,668,458...85,027,070
Ensembl chr 9:84,668,551...85,027,070
JBrowse link
G OGG1 8-oxoguanine DNA glycosylase IEA Ensembl GO_REF:0000107 NCBI chr 3:9,749,952...9,788,246
Ensembl chr 3:9,749,944...9,788,219
JBrowse link
G OPN4 opsin 4 NOT ISO (MGI:5925970|PMID:26320947) MGI PMID:26320947 MGI:5925970 NCBI chr10:86,653,495...86,666,460
Ensembl chr10:86,654,547...86,666,848
JBrowse link
G PER1 period circadian regulator 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:8,140,470...8,156,360
Ensembl chr17:8,140,472...8,156,506
JBrowse link
G PER2 period circadian regulator 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:238,244,038...238,290,102
Ensembl chr 2:238,244,044...238,290,102
JBrowse link
G PER3 period circadian regulator 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:7,784,285...7,845,181
Ensembl chr 1:7,784,320...7,845,177
JBrowse link
G POLG DNA polymerase gamma, catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr15:89,316,320...89,334,824
Ensembl chr15:89,305,198...89,334,861
JBrowse link
G PPARG peroxisome proliferator activated receptor gamma ISO (MGI:3830801|PMID:19041764) UniProt PMID:19041764 MGI:3830801 NCBI chr 3:12,287,368...12,434,344
Ensembl chr 3:12,287,368...12,434,356
JBrowse link
G RHO rhodopsin ISO (MGI:3655007|PMID:16723493) MGI PMID:16723493 MGI:3655007 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344
JBrowse link
G RIC8A RIC8 guanine nucleotide exchange factor A ISO (MGI:3692154|PMID:16221497) MGI PMID:16221497 MGI:3692154 NCBI chr11:207,511...215,175
Ensembl chr11:207,511...215,113
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 ISO RGD PMID:17389522 RGD:9585654 NCBI chr 1:68,428,822...68,450,322
Ensembl chr 1:68,428,822...68,449,954
JBrowse link
G SLC1A2 solute carrier family 1 member 2 ISO (MGI:1203466|PMID:9539795) MGI PMID:9539795 MGI:1203466 NCBI chr11:35,251,205...35,420,058
Ensembl chr11:35,251,205...35,420,063
JBrowse link
G SLC1A3 solute carrier family 1 member 3 IEA Ensembl GO_REF:0000107 NCBI chr 5:36,606,606...36,688,334
Ensembl chr 5:36,606,355...36,688,334
JBrowse link
G SLC4A10 solute carrier family 4 member 10 IEA Ensembl GO_REF:0000107 NCBI chr 2:161,620,963...161,985,270
Ensembl chr 2:161,424,332...161,985,282
JBrowse link
G SYNE1 spectrin repeat containing nuclear envelope protein 1 ISO RGD PMID:8700883 RGD:632616 NCBI chr 6:152,121,684...152,637,395
Ensembl chr 6:152,121,684...152,637,801
JBrowse link
G TH tyrosine hydroxylase IEA Ensembl GO_REF:0000107 NCBI chr11:2,163,929...2,174,081
Ensembl chr11:2,163,929...2,171,877
Ensembl chr11:2,163,929...2,171,877
JBrowse link
absorption of visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RHO rhodopsin ISS AgBase GO_REF:0000024 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344
JBrowse link
adaptation of rhodopsin mediated signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RDH11 retinol dehydrogenase 11 ISO (MGI:3584215|PMID:15790565) MGI PMID:15790565 MGI:3584215 NCBI chr14:67,676,800...67,695,764
Ensembl chr14:67,676,800...67,695,793
JBrowse link
G RS1 retinoschisin 1 ISO (MGI:3055638|PMID:15326152) MGI PMID:15326152 MGI:3055638 NCBI chr  X:18,639,688...18,672,108
Ensembl chr  X:18,639,688...18,672,108
Ensembl chr  X:18,639,688...18,672,108
JBrowse link
blue light signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRY1 cryptochrome circadian regulator 1 NAS (PMID:8909283) UniProtKB PMID:8909283 NCBI chr12:106,991,364...107,093,872
Ensembl chr12:106,991,364...107,093,549
JBrowse link
G CRY2 cryptochrome circadian regulator 2 NAS (PMID:8909283) UniProtKB PMID:8909283 NCBI chr11:45,847,118...45,883,244
Ensembl chr11:45,847,118...45,883,248
JBrowse link
cellular response to high light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT2 AKT serine/threonine kinase 2 IEA Ensembl GO_REF:0000107 NCBI chr19:40,230,317...40,285,531
Ensembl chr19:40,230,317...40,285,536
JBrowse link
cellular response to light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRB1 crumbs cell polarity complex component 1 ISO (MGI:3696487|PMID:17234588) MGI PMID:17234588 MGI:3696487 NCBI chr 1:197,201,504...197,478,455
Ensembl chr 1:197,268,204...197,478,455
JBrowse link
G GPR52 G protein-coupled receptor 52 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:174,447,964...174,449,545
Ensembl chr 1:174,447,964...174,449,545
JBrowse link
G GPR88 G protein-coupled receptor 88 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:100,538,139...100,542,021
Ensembl chr 1:100,538,139...100,542,021
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha ISO RGD PMID:17475674 RGD:9068879 NCBI chr14:61,695,513...61,748,259
Ensembl chr14:61,695,513...61,748,259
JBrowse link
G KCNE1 potassium voltage-gated channel subfamily E regulatory subunit 1 ISO RGD PMID:24202060 RGD:12910722 NCBI chr21:34,446,688...34,512,210
Ensembl chr21:34,446,688...34,512,210
JBrowse link
G OPN1LW opsin 1, long wave sensitive IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:154,144,243...154,159,032
Ensembl chr  X:154,144,243...154,159,032
JBrowse link
G OPN1MW opsin 1, medium wave sensitive IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:154,182,596...154,196,861
Ensembl chr  X:154,182,596...154,196,861
JBrowse link
G OPN1MW2 opsin 1, medium wave sensitive 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:154,219,734...154,233,286
Ensembl chr  X:154,219,756...154,233,286
JBrowse link
G OPN1MW3 opsin 1, medium wave sensitive 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:154,257,560...154,271,090
Ensembl chr  X:154,257,538...154,271,805
JBrowse link
G OPN1SW opsin 1, short wave sensitive IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:128,772,485...128,775,794
Ensembl chr 7:128,772,491...128,775,790
JBrowse link
G OPN3 opsin 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:241,593,124...241,640,369
Ensembl chr 1:241,590,102...241,677,376
JBrowse link
G OPN4 opsin 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:86,653,495...86,666,460
Ensembl chr10:86,654,547...86,666,848
JBrowse link
G OPN5 opsin 5 ISS
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 6:47,782,037...47,831,088
Ensembl chr 6:47,781,982...47,832,780
JBrowse link
G RGR retinal G protein coupled receptor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:84,243,741...84,259,960
Ensembl chr10:84,230,666...84,259,960
JBrowse link
G RHO rhodopsin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344
JBrowse link
G RP1 RP1 axonemal microtubule associated IEA Ensembl GO_REF:0000107 NCBI chr 8:54,509,448...54,871,720
Ensembl chr 8:54,509,422...54,871,720
JBrowse link
G RPGR retinitis pigmentosa GTPase regulator ISO (MGI:1354839|PMID:10725384) MGI PMID:10725384 MGI:1354839 NCBI chr  X:38,269,163...38,327,509
Ensembl chr  X:38,269,170...38,327,544
Ensembl chr  X:38,269,170...38,327,544
JBrowse link
G RRH retinal pigment epithelium-derived rhodopsin homolog IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:109,827,972...109,844,942
Ensembl chr 4:109,827,972...109,849,123
JBrowse link
G TRPM1 transient receptor potential cation channel subfamily M member 1 IEA
IMP
(PMID:19896109) InterPro
UniProtKB
PMID:19896109 GO_REF:0000002 NCBI chr15:31,001,065...31,161,160
Ensembl chr15:31,001,061...31,161,273
JBrowse link
G TRPM3 transient receptor potential cation channel subfamily M member 3 IEA InterPro GO_REF:0000002 NCBI chr 9:70,529,060...71,446,971
Ensembl chr 9:70,529,063...71,446,904
JBrowse link
cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AQP1 aquaporin 1 (Colton blood group) IDA (PMID:19424603) UniProtKB PMID:19424603 NCBI chr 7:30,911,853...30,925,516
Ensembl chr 7:30,911,853...30,925,517
Ensembl chr 7:30,911,853...30,925,517
JBrowse link
G ATF4 activating transcription factor 4 ISS UniProtKB GO_REF:0000024 NCBI chr22:39,514,494...39,522,686
Ensembl chr22:39,519,672...39,522,683
Ensembl chr22:39,519,672...39,522,683
JBrowse link
G ATR ATR serine/threonine kinase IMP (PMID:9925639) BHF-UCL PMID:9925639 NCBI chr 3:142,449,235...142,578,793
Ensembl chr 3:142,449,007...142,578,733
JBrowse link
G AURKB aurora kinase B IDA (PMID:20959462) UniProtKB PMID:20959462 NCBI chr17:8,204,731...8,210,767
Ensembl chr17:8,204,733...8,210,600
JBrowse link
G BAK1 BCL2 antagonist/killer 1 IMP
ISS
(PMID:15901672) UniProtKB
BHF-UCL
PMID:15901672 GO_REF:0000024 NCBI chr 6:33,572,552...33,580,296
Ensembl chr 6:33,572,547...33,580,293
JBrowse link
G BAX BCL2 associated X, apoptosis regulator IEA Ensembl GO_REF:0000107 NCBI chr19:48,954,825...48,961,798
Ensembl chr19:48,954,815...48,961,798
JBrowse link
G BMF Bcl2 modifying factor IDA (PMID:23629966) CAFA PMID:23629966 NCBI chr15:40,087,890...40,108,879
Ensembl chr15:40,087,890...40,108,892
JBrowse link
G CASP9 caspase 9 IDA (PMID:15657060) UniProtKB PMID:15657060 NCBI chr 1:15,491,401...15,524,912
Ensembl chr 1:15,490,832...15,526,534
JBrowse link
G CDC25A cell division cycle 25A IDA (PMID:19966869) UniProtKB PMID:19966869 NCBI chr 3:48,157,146...48,188,417
Ensembl chr 3:48,157,146...48,188,417
JBrowse link
G COPS9 COP9 signalosome subunit 9 IDA (PMID:26456823) UniProtKB PMID:26456823 NCBI chr 2:240,126,548...240,136,802
Ensembl chr 2:240,126,563...240,136,807
JBrowse link
G CREBBP CREB binding protein IDA (PMID:24939902) UniProtKB PMID:24939902 NCBI chr16:3,725,054...3,880,727
Ensembl chr16:3,725,054...3,880,713
Ensembl chr16:3,725,054...3,880,713
JBrowse link
G DDIAS DNA damage induced apoptosis suppressor ISO (MGI:3718924|PMID:17515607) MGI PMID:17515607 MGI:3718924 NCBI chr11:82,901,735...82,934,659
Ensembl chr11:82,899,975...82,958,277
JBrowse link
G DHX36 DEAH-box helicase 36 IMP (PMID:27940037) UniProt PMID:27940037 NCBI chr 3:154,272,546...154,324,487
Ensembl chr 3:154,272,546...154,324,487
JBrowse link
G EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 ISS UniProtKB GO_REF:0000024 NCBI chr15:39,934,115...40,035,591
Ensembl chr15:39,934,115...40,035,591
JBrowse link
G EIF2S1 eukaryotic translation initiation factor 2 subunit alpha ISS UniProtKB GO_REF:0000024 NCBI chr14:67,360,328...67,386,516
Ensembl chr14:67,360,151...67,386,516
Ensembl chr14:67,360,151...67,386,516
JBrowse link
G EP300 E1A binding protein p300 IDA (PMID:24939902) UniProtKB PMID:24939902 NCBI chr22:41,092,592...41,180,077
Ensembl chr22:41,092,592...41,180,077
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit IGI (PMID:17055345) BHF-UCL PMID:17055345 NCBI chr16:13,920,137...13,952,348
Ensembl chr16:13,920,154...13,952,348
Ensembl chr16:13,920,154...13,952,348
JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 IDA (PMID:17873522) UniProtKB PMID:17873522 NCBI chr 4:152,320,544...152,536,873
Ensembl chr 4:152,320,544...152,536,092
JBrowse link
G FMR1 FMRP translational regulator 1 ISS UniProtKB GO_REF:0000024 NCBI chr  X:147,911,919...147,951,125
Ensembl chr  X:147,911,951...147,951,125
Ensembl chr  X:147,911,951...147,951,125
JBrowse link
G INO80 INO80 complex ATPase subunit IMP (PMID:18026119) UniProtKB PMID:18026119 NCBI chr15:40,978,880...41,117,778
Ensembl chr15:40,978,880...41,116,280
JBrowse link
G KDM1A lysine demethylase 1A IDA (PMID:24217620) MGI PMID:24217620 NCBI chr 1:23,019,443...23,083,691
Ensembl chr 1:23,019,443...23,083,689
JBrowse link
G MAPK13 mitogen-activated protein kinase 13 IDA (PMID:9218798) UniProtKB PMID:9218798 NCBI chr 6:36,130,513...36,144,521
Ensembl chr 6:36,127,809...36,144,524
JBrowse link
G MAPK9 mitogen-activated protein kinase 9 ISO RGD PMID:8875991 RGD:2304246 NCBI chr 5:180,233,143...180,292,083
Ensembl chr 5:180,233,143...180,292,099
JBrowse link
G METTL3 methyltransferase like 3 IDA (PMID:28297716) UniProtKB PMID:28297716 NCBI chr14:21,498,138...21,511,340
Ensembl chr14:21,498,133...21,511,342
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor IEP (PMID:17873522) UniProtKB PMID:17873522 NCBI chr 8:127,735,434...127,742,951
Ensembl chr 8:127,735,434...127,742,951
JBrowse link
G N4BP1 NEDD4 binding protein 1 IMP (PMID:17592138) BHF-UCL PMID:17592138 NCBI chr16:48,538,726...48,610,214
Ensembl chr16:48,538,726...48,620,148
JBrowse link
G NEDD4 NEDD4 E3 ubiquitin protein ligase IMP (PMID:17996703) BHF-UCL PMID:17996703 NCBI chr15:55,826,917...55,993,612
Ensembl chr15:55,826,922...55,993,746
JBrowse link
G NFATC4 nuclear factor of activated T cells 4 IEA Ensembl GO_REF:0000107 NCBI chr14:24,366,911...24,379,604
Ensembl chr14:24,365,673...24,379,604
JBrowse link
G NOC2L NOC2 like nucleolar associated transcriptional repressor IDA (PMID:20959462) UniProtKB PMID:20959462 NCBI chr 1:944,203...959,256
Ensembl chr 1:944,203...959,309
JBrowse link
G NPM1 nucleophosmin 1 IDA (PMID:19160485) CAFA PMID:19160485 NCBI chr 5:171,387,116...171,410,900
Ensembl chr 5:171,387,116...171,411,137
JBrowse link
G NSMCE3 NSE3 homolog, SMC5-SMC6 complex component IMP (PMID:27427983) UniProtKB PMID:27427983 NCBI chr15:29,264,989...29,269,822
Ensembl chr15:29,264,989...29,269,822
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 IMP (PMID:24289924) BHF-UCL PMID:24289924 NCBI chr 1:226,360,691...226,408,093
Ensembl chr 1:226,360,691...226,408,093
JBrowse link
G PBK PDZ binding kinase IEA Ensembl GO_REF:0000107 NCBI chr 8:27,809,624...27,837,817
Ensembl chr 8:27,809,624...27,838,082
JBrowse link
G PCNA proliferating cell nuclear antigen IDA (PMID:24939902) UniProtKB PMID:24939902 NCBI chr20:5,114,953...5,126,622
Ensembl chr20:5,114,953...5,126,626
JBrowse link
G PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:68,215,737...68,301,821
Ensembl chr 5:68,215,756...68,301,821
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit IDA (PMID:24939902) UniProtKB PMID:24939902 NCBI chr19:50,384,291...50,418,018
Ensembl chr19:50,384,204...50,418,018
JBrowse link
G POLK DNA polymerase kappa IDA (PMID:28297716) UniProtKB PMID:28297716 NCBI chr 5:75,511,308...75,605,820
Ensembl chr 5:75,511,756...75,601,144
JBrowse link
G PPP1R15A protein phosphatase 1 regulatory subunit 15A ISO RGD PMID:9811446 RGD:9999409 NCBI chr19:48,872,392...48,876,062
Ensembl chr19:48,872,421...48,876,058
JBrowse link
G PTGS2 prostaglandin-endoperoxide synthase 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:186,671,791...186,680,423
Ensembl chr 1:186,671,791...186,680,423
JBrowse link
G PTN pleiotrophin IEA Ensembl GO_REF:0000107 NCBI chr 7:137,227,341...137,343,733
Ensembl chr 7:137,227,341...137,343,774
JBrowse link
G PTPRK protein tyrosine phosphatase receptor type K IDA (PMID:16849327) UniProtKB PMID:16849327 NCBI chr 6:127,968,785...128,520,603
Ensembl chr 6:127,968,779...128,520,674
JBrowse link
G RHBDD1 rhomboid domain containing 1 ISS UniProtKB GO_REF:0000024 NCBI chr 2:226,800,159...226,999,210
Ensembl chr 2:226,835,581...226,999,215
JBrowse link
G RHNO1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 IDA (PMID:21659603) UniProtKB PMID:21659603 NCBI chr12:2,876,265...2,889,524
Ensembl chr12:2,876,258...2,889,524
JBrowse link
G RNF168 ring finger protein 168 ISO (MGI:5562615|PMID:24217620) MGI PMID:24217620 MGI:5562615 NCBI chr 3:196,468,783...196,503,768
Ensembl chr 3:196,468,783...196,503,768
JBrowse link
G RPL26 ribosomal protein L26 IMP (PMID:16213212) CAFA PMID:16213212 NCBI chr17:8,377,516...8,383,193
Ensembl chr17:8,377,516...8,383,213
JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 IMP (PMID:18026119) UniProtKB PMID:18026119 NCBI chr19:48,993,448...49,015,995
Ensembl chr19:48,993,562...49,015,970
JBrowse link
G SDE2 SDE2 telomere maintenance homolog IDA (PMID:27906959) UniProt PMID:27906959 NCBI chr 1:225,982,702...225,999,343
Ensembl chr 1:225,982,702...225,999,343
JBrowse link
G TAF1 TATA-box binding protein associated factor 1 IDA (PMID:24289924) ParkinsonsUK-UCL PMID:24289924 NCBI chr  X:71,366,220...71,530,525
Ensembl chr  X:71,366,264...71,532,374
Ensembl chr  X:71,366,264...71,532,374
JBrowse link
G TMEM161A transmembrane protein 161A IDA (PMID:16551573) BHF-UCL PMID:16551573 NCBI chr19:19,119,169...19,138,478
Ensembl chr19:19,119,169...19,138,513
JBrowse link
G TP53 tumor protein p53 IDA (PMID:16213212), (PMID:23629966) CAFA PMID:16213212, PMID:23629966 NCBI chr17:7,668,402...7,687,550
Ensembl chr17:7,661,779...7,687,538
Ensembl chr17:7,661,779...7,687,538
JBrowse link
G TP53INP1 tumor protein p53 inducible nuclear protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 8:94,925,972...94,949,378
Ensembl chr 8:94,925,972...94,949,378
JBrowse link
G TREX1 three prime repair exonuclease 1 ISO (MGI:5014018|PMID:20511593) MGI PMID:20511593 MGI:5014018 NCBI chr 3:48,465,830...48,467,645
Ensembl chr 3:48,465,811...48,467,645
JBrowse link
G TRIAP1 TP53 regulated inhibitor of apoptosis 1 IDA (PMID:15735003) BHF-UCL PMID:15735003 NCBI chr12:120,443,964...120,446,384
Ensembl chr12:120,443,964...120,446,384
JBrowse link
G USP28 ubiquitin specific peptidase 28 IDA (PMID:17873522) UniProtKB PMID:17873522 NCBI chr11:113,797,875...113,875,572
Ensembl chr11:113,797,874...113,875,570
JBrowse link
G USP47 ubiquitin specific peptidase 47 ISS (PMID:19966869) UniProtKB PMID:19966869 NCBI chr11:11,841,972...11,961,887
Ensembl chr11:11,841,423...11,961,887
JBrowse link
G YY1 YY1 transcription factor IMP (PMID:18026119) UniProtKB PMID:18026119 NCBI chr14:100,239,144...100,282,788
Ensembl chr14:100,238,298...100,282,788
JBrowse link
G ZBTB1 zinc finger and BTB domain containing 1 IMP (PMID:24657165) UniProtKB PMID:24657165 NCBI chr14:64,504,726...64,533,693
Ensembl chr14:64,503,712...64,533,690
JBrowse link
cellular response to UV-A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CERS1 ceramide synthase 1 IDA (PMID:19800881) UniProtKB PMID:19800881 NCBI chr19:18,868,545...18,896,727
Ensembl chr19:18,868,545...18,896,727
JBrowse link
G MME membrane metalloendopeptidase IDA (PMID:20876573) UniProtKB PMID:20876573 NCBI chr 3:155,024,202...155,183,729
Ensembl chr 3:155,024,124...155,183,704
Ensembl chr 3:155,024,124...155,183,704
JBrowse link
G MMP1 matrix metallopeptidase 1 IDA (PMID:31380578) UniProt PMID:31380578 NCBI chr11:102,789,919...102,798,160
Ensembl chr11:102,789,919...102,798,160
JBrowse link
G MMP2 matrix metallopeptidase 2 IDA (PMID:31380578) UniProt PMID:31380578 NCBI chr16:55,478,830...55,506,691
Ensembl chr16:55,389,700...55,506,691
JBrowse link
G MMP3 matrix metallopeptidase 3 IDA (PMID:31380578) UniProt PMID:31380578 NCBI chr11:102,835,801...102,843,609
Ensembl chr11:102,835,801...102,843,609
JBrowse link
G MMP9 matrix metallopeptidase 9 IDA (PMID:31380578) UniProt PMID:31380578 NCBI chr20:46,008,908...46,016,561
Ensembl chr20:46,008,908...46,016,561
JBrowse link
G OPN1SW opsin 1, short wave sensitive IDA (PMID:31380578) UniProt PMID:31380578 NCBI chr 7:128,772,485...128,775,794
Ensembl chr 7:128,772,491...128,775,790
JBrowse link
G OPN3 opsin 3 IDA (PMID:31380578) UniProt PMID:31380578 NCBI chr 1:241,593,124...241,640,369
Ensembl chr 1:241,590,102...241,677,376
JBrowse link
G OPN5 opsin 5 IDA (PMID:31380578) UniProt PMID:31380578 NCBI chr 6:47,782,037...47,831,088
Ensembl chr 6:47,781,982...47,832,780
JBrowse link
G PPID peptidylprolyl isomerase D IMP (PMID:23220213) UniProtKB PMID:23220213 NCBI chr 4:158,709,127...158,723,396
Ensembl chr 4:158,709,127...158,723,396
JBrowse link
G TIMP1 TIMP metallopeptidase inhibitor 1 IDA (PMID:31380578) UniProt PMID:31380578 NCBI chr  X:47,582,408...47,586,789
Ensembl chr  X:47,582,408...47,586,789
JBrowse link
cellular response to UV-B term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN1A cyclin dependent kinase inhibitor 1A ISS UniProtKB GO_REF:0000024 NCBI chr 6:36,676,463...36,687,332
Ensembl chr 6:36,676,460...36,687,339
Ensembl chr 6:36,676,460...36,687,339
JBrowse link
G CRIP1 cysteine rich protein 1 IDA (PMID:20415737) UniProtKB PMID:20415737 NCBI chr14:105,486,886...105,488,947
Ensembl chr14:105,486,317...105,488,947
JBrowse link
G HYAL1 hyaluronidase 1 IDA (PMID:21699545) UniProtKB PMID:21699545 NCBI chr 3:50,299,889...50,312,951
Ensembl chr 3:50,299,890...50,312,381
JBrowse link
G HYAL2 hyaluronidase 2 IDA (PMID:21699545) UniProtKB PMID:21699545 NCBI chr 3:50,317,802...50,322,768
Ensembl chr 3:50,317,790...50,322,782
JBrowse link
G HYAL3 hyaluronidase 3 IDA (PMID:21699545) UniProtKB PMID:21699545 NCBI chr 3:50,292,832...50,299,405
Ensembl chr 3:50,292,831...50,299,405
JBrowse link
G MFAP4 microfibril associated protein 4 IDA (PMID:22355679) BHF-UCL PMID:22355679 NCBI chr17:19,383,445...19,387,190
Ensembl chr17:19,383,442...19,387,240
Ensembl chr17:19,383,442...19,387,240
JBrowse link
G MME membrane metalloendopeptidase IDA (PMID:20876573) UniProtKB PMID:20876573 NCBI chr 3:155,024,202...155,183,729
Ensembl chr 3:155,024,124...155,183,704
Ensembl chr 3:155,024,124...155,183,704
JBrowse link
G RPL13A ribosomal protein L13a ISO RGD PMID:10483362 RGD:11036101 NCBI chr19:49,487,608...49,492,308
Ensembl chr19:49,487,554...49,492,308
JBrowse link
G RPL35 ribosomal protein L35 ISO RGD PMID:10483362 RGD:11036101 NCBI chr 9:124,857,883...124,861,957
Ensembl chr 9:124,857,880...124,861,981
JBrowse link
G STK11 serine/threonine kinase 11 IDA (PMID:25329316) UniProtKB PMID:25329316 NCBI chr19:1,205,778...1,228,431
Ensembl chr19:1,177,558...1,228,431
Ensembl chr19:1,177,558...1,228,431
JBrowse link
cellular response to UV-C term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9orf116 chromosome 9 open reading frame 116 IEA Ensembl GO_REF:0000107 NCBI chr 9:135,495,181...135,499,869
Ensembl chr 9:135,495,181...135,501,734
JBrowse link
G CARD16 caspase recruitment domain family member 16 IDA (PMID:16920334) UniProtKB PMID:16920334 NCBI chr11:105,040,218...105,045,416
Ensembl chr11:105,041,326...105,101,431
JBrowse link
G EI24 EI24 autophagy associated transmembrane protein ISO (MGI:5543725|PMID:24014029) MGI PMID:24014029 MGI:5543725 NCBI chr11:125,569,216...125,584,684
Ensembl chr11:125,569,280...125,584,684
JBrowse link
G IMPACT impact RWD domain protein ISS UniProtKB GO_REF:0000024 NCBI chr18:24,426,670...24,453,531
Ensembl chr18:24,426,634...24,453,531
JBrowse link
G MDM2 MDM2 proto-oncogene ISO RGD PMID:14558917 RGD:2317408 NCBI chr12:68,808,149...68,850,686
Ensembl chr12:68,808,177...68,850,686
JBrowse link
G POLH DNA polymerase eta IEA Ensembl GO_REF:0000107 NCBI chr 6:43,576,147...43,620,523
Ensembl chr 6:43,576,185...43,620,523
Ensembl chr 6:43,576,185...43,620,523
JBrowse link
G POLI DNA polymerase iota ISO (MGI:3695544|PMID:17114294) MGI PMID:17114294 MGI:3695544 NCBI chr18:54,269,479...54,321,266
Ensembl chr18:54,269,404...54,321,266
JBrowse link
G ST20 suppressor of tumorigenicity 20 IMP (PMID:11857354) UniProtKB PMID:11857354 NCBI chr15:79,898,842...79,923,752
Ensembl chr15:79,898,840...79,923,702
JBrowse link
G TP53 tumor protein p53 IEA Ensembl GO_REF:0000107 NCBI chr17:7,668,402...7,687,550
Ensembl chr17:7,661,779...7,687,538
Ensembl chr17:7,661,779...7,687,538
JBrowse link
dark adaptation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TENT2 terminal nucleotidyltransferase 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:79,612,421...79,688,246
Ensembl chr 5:79,612,120...79,686,648
JBrowse link
detection of light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OPN3 opsin 3 NAS (PMID:10234000) UniProtKB PMID:10234000 NCBI chr 1:241,593,124...241,640,369
Ensembl chr 1:241,590,102...241,677,376
JBrowse link
G PDE6B phosphodiesterase 6B ISO (MGI:2155023|PMID:11747369) MGI PMID:11747369 MGI:2155023 NCBI chr 4:587,325...670,892
Ensembl chr 4:625,584...670,782
JBrowse link
G RHO rhodopsin ISO (MGI:2155023|PMID:11747369) MGI PMID:11747369 MGI:2155023 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344
JBrowse link
detection of light stimulus involved in visual perception term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP8A2 ATPase phospholipid transporting 8A2 IEA Ensembl GO_REF:0000107 NCBI chr13:25,371,974...26,025,851
Ensembl chr13:25,371,974...26,025,851
JBrowse link
G BEST1 bestrophin 1 IEA Ensembl GO_REF:0000107 NCBI chr11:61,946,722...61,965,515
Ensembl chr11:61,950,063...61,965,515
JBrowse link
G CACNA1F calcium voltage-gated channel subunit alpha1 F IMP (PMID:7571473) UniProtKB PMID:7571473 NCBI chr  X:49,205,063...49,233,404
Ensembl chr  X:49,205,063...49,233,371
JBrowse link
G CACNA2D4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 IMP (PMID:17033974) UniProtKB PMID:17033974 NCBI chr12:1,791,963...1,922,606
Ensembl chr12:1,791,963...1,918,666
JBrowse link
G CACNB4 calcium voltage-gated channel auxiliary subunit beta 4 ISO (MGI:3795256|PMID:16636205) MGI PMID:16636205 MGI:3795256 NCBI chr 2:151,832,771...152,099,167
Ensembl chr 2:151,832,768...152,099,475
Ensembl chr 2:151,832,768...152,099,475
JBrowse link
G CCDC66 coiled-coil domain containing 66 IEA Ensembl GO_REF:0000107 NCBI chr 3:56,557,125...56,621,837
Ensembl chr 3:56,557,161...56,621,837
JBrowse link
G CEP250 centrosomal protein 250 ISS UniProt GO_REF:0000024 NCBI chr20:35,455,137...35,519,280
Ensembl chr20:35,455,164...35,519,280
JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 IMP (PMID:15557452) UniProtKB PMID:15557452 NCBI chr16:57,882,340...57,971,128
Ensembl chr16:57,882,340...57,971,128
JBrowse link
G CRB1 crumbs cell polarity complex component 1 ISO (MGI:5315300|PMID:22447858) MGI PMID:22447858 MGI:5315300 NCBI chr 1:197,201,504...197,478,455
Ensembl chr 1:197,268,204...197,478,455
JBrowse link
G EYS eyes shut homolog IMP (PMID:18836446), (PMID:18976725), (PMID:20696082), (PMID:22363543) CACAO PMID:18836446, PMID:18976725, PMID:20696082, PMID:22363543 NCBI chr 6:63,719,980...65,707,226
Ensembl chr 6:63,719,980...65,707,226
JBrowse link
G GJA10 gap junction protein alpha 10 IEA Ensembl GO_REF:0000107 NCBI chr 6:89,894,469...89,896,120
Ensembl chr 6:89,894,469...89,921,760
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 IMP (PMID:17584859) UniProtKB PMID:17584859 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 IMP (PMID:12077706) UniProtKB PMID:12077706 NCBI chr 1:109,603,091...109,619,616
Ensembl chr 1:109,603,254...109,619,929
JBrowse link
G GRM6 glutamate metabotropic receptor 6 IMP (PMID:17405131) UniProtKB PMID:17405131 NCBI chr 5:178,978,327...178,995,320
Ensembl chr 5:178,977,587...178,996,206
JBrowse link
G GUCY2F guanylate cyclase 2F, retinal IEA Ensembl GO_REF:0000107 NCBI chr  X:109,372,061...109,482,086
Ensembl chr  X:109,372,906...109,482,086
JBrowse link
G PRPH2 peripherin 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:42,694,509...42,723,039
Ensembl chr 6:42,696,598...42,722,597
JBrowse link
G RBP4 retinol binding protein 4 ISO (MGI:3687059|PMID:12484775) MGI PMID:12484775 MGI:3687059 NCBI chr10:93,591,694...93,601,744
Ensembl chr10:93,591,687...93,601,744
JBrowse link
G REEP6 receptor accessory protein 6 IMP (PMID:27889058) UniProtKB PMID:27889058 NCBI chr19:1,491,181...1,497,927
Ensembl chr19:1,491,166...1,497,927
JBrowse link
G RGS9BP regulator of G protein signaling 9 binding protein IEA Ensembl GO_REF:0000107 NCBI chr19:32,675,848...32,678,300
Ensembl chr19:32,675,848...32,678,300
JBrowse link
G ROM1 retinal outer segment membrane protein 1 IEA Ensembl GO_REF:0000107 NCBI chr11:62,613,257...62,615,116
Ensembl chr11:62,611,722...62,615,116
Ensembl chr11:62,611,722...62,615,116
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 IMP (PMID:15557452) UniProtKB PMID:15557452 NCBI chr 1:68,428,822...68,450,322
Ensembl chr 1:68,428,822...68,449,954
JBrowse link
G RPGRIP1 RPGR interacting protein 1 ISO (PMID:21521437) CACAO PMID:21521437 NCBI chr14:21,280,083...21,351,316
Ensembl chr14:21,287,939...21,351,301
JBrowse link
G SEMA5A semaphorin 5A ISO (MGI:5140622|PMID:21835343) MGI PMID:21835343 MGI:5140622 NCBI chr 5:9,035,030...9,546,121
Ensembl chr 5:9,035,033...9,546,075
JBrowse link
G SEMA5B semaphorin 5B IEA Ensembl GO_REF:0000107 NCBI chr 3:122,909,082...123,028,605
Ensembl chr 3:122,909,082...123,028,605
JBrowse link
G TULP1 TUB like protein 1 IMP (PMID:15557452) UniProtKB PMID:15557452 NCBI chr 6:35,497,874...35,512,896
Ensembl chr 6:35,497,874...35,512,896
JBrowse link
detection of UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FECH ferrochelatase ISO (MGI:2384247|PMID:12149233) MGI PMID:12149233 MGI:2384247 NCBI chr18:57,544,377...57,586,708
Ensembl chr18:57,544,389...57,586,702
Ensembl chr18:57,544,389...57,586,702
JBrowse link
detection of visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELOVL4 ELOVL fatty acid elongase 4 IEA GOC GO_REF:0000108 NCBI chr 6:79,914,814...79,947,553
Ensembl chr 6:79,914,814...79,947,553
JBrowse link
G GPR52 G protein-coupled receptor 52 IEA GOC GO_REF:0000108 NCBI chr 1:174,447,964...174,449,545
Ensembl chr 1:174,447,964...174,449,545
JBrowse link
G GPR88 G protein-coupled receptor 88 IEA GOC GO_REF:0000108 NCBI chr 1:100,538,139...100,542,021
Ensembl chr 1:100,538,139...100,542,021
JBrowse link
G GRM6 glutamate metabotropic receptor 6 TAS (PMID:9215706) PINC PMID:9215706 NCBI chr 5:178,978,327...178,995,320
Ensembl chr 5:178,977,587...178,996,206
JBrowse link
G IRX6 iroquois homeobox 6 ISO (MGI:5447580|PMID:23172916) MGI PMID:23172916 MGI:5447580 NCBI chr16:55,323,760...55,330,760
Ensembl chr16:55,323,760...55,330,760
Ensembl chr16:55,323,760...55,330,760
JBrowse link
G OPN1LW opsin 1, long wave sensitive IEA GOC GO_REF:0000108 NCBI chr  X:154,144,243...154,159,032
Ensembl chr  X:154,144,243...154,159,032
JBrowse link
G OPN1MW opsin 1, medium wave sensitive IEA GOC GO_REF:0000108 NCBI chr  X:154,182,596...154,196,861
Ensembl chr  X:154,182,596...154,196,861
JBrowse link
G OPN1MW2 opsin 1, medium wave sensitive 2 IEA GOC GO_REF:0000108 NCBI chr  X:154,219,734...154,233,286
Ensembl chr  X:154,219,756...154,233,286
JBrowse link
G OPN1MW3 opsin 1, medium wave sensitive 3 IEA GOC GO_REF:0000108 NCBI chr  X:154,257,560...154,271,090
Ensembl chr  X:154,257,538...154,271,805
JBrowse link
G OPN1SW opsin 1, short wave sensitive IEA GOC GO_REF:0000108 NCBI chr 7:128,772,485...128,775,794
Ensembl chr 7:128,772,491...128,775,790
JBrowse link
G OPN3 opsin 3 IEA GOC GO_REF:0000108 NCBI chr 1:241,593,124...241,640,369
Ensembl chr 1:241,590,102...241,677,376
JBrowse link
G OPN4 opsin 4 IEA GOC GO_REF:0000108 NCBI chr10:86,653,495...86,666,460
Ensembl chr10:86,654,547...86,666,848
JBrowse link
G OPN5 opsin 5 IEA GOC GO_REF:0000108 NCBI chr 6:47,782,037...47,831,088
Ensembl chr 6:47,781,982...47,832,780
JBrowse link
G RGR retinal G protein coupled receptor IEA GOC GO_REF:0000108 NCBI chr10:84,243,741...84,259,960
Ensembl chr10:84,230,666...84,259,960
JBrowse link
G RRH retinal pigment epithelium-derived rhodopsin homolog IEA GOC GO_REF:0000108 NCBI chr 4:109,827,972...109,844,942
Ensembl chr 4:109,827,972...109,849,123
JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLA1 DNA polymerase alpha 1, catalytic subunit NOT IMP (PMID:1730053) UniProtKB PMID:1730053 NCBI chr  X:24,693,877...24,996,986
Ensembl chr  X:24,693,909...24,996,986
JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:74,592,582...74,669,341
Ensembl chr11:74,493,851...74,669,117
JBrowse link
G TREX1 three prime repair exonuclease 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:48,465,830...48,467,645
Ensembl chr 3:48,465,811...48,467,645
JBrowse link
entrainment of circadian clock by photoperiod term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC074143.1 novel protein IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr16:67,163,385...67,165,815 JBrowse link
G ATOH7 atonal bHLH transcription factor 7 ISS UniProt GO_REF:0000024 NCBI chr10:68,230,595...68,232,113
Ensembl chr10:68,230,595...68,232,113
JBrowse link
G BHLHE40 basic helix-loop-helix family member e40 ISS (PMID:18411297) BHF-UCL PMID:18411297 NCBI chr 3:4,979,420...4,985,323
Ensembl chr 3:4,979,437...4,985,323
JBrowse link
G CRTC1 CREB regulated transcription coactivator 1 ISS UniProtKB GO_REF:0000024 NCBI chr19:18,683,621...18,782,333
Ensembl chr19:18,683,678...18,782,333
JBrowse link
G CRY1 cryptochrome circadian regulator 1 ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr12:106,991,364...107,093,872
Ensembl chr12:106,991,364...107,093,549
JBrowse link
G CRY2 cryptochrome circadian regulator 2 IEA
IBA
ISS
(PMID:21873635) Ensembl
GO_Central
UniProtKB
PMID:21873635 GO_REF:0000024, GO_REF:0000107 NCBI chr11:45,847,118...45,883,244
Ensembl chr11:45,847,118...45,883,248
JBrowse link
G FBXL12 F-box and leucine rich repeat protein 12 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:9,810,267...9,820,528
Ensembl chr19:9,810,267...9,827,816
JBrowse link
G FBXL17 F-box and leucine rich repeat protein 17 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:107,859,035...108,382,098
Ensembl chr 5:107,859,035...108,382,098
JBrowse link
G FBXL21P F-box and leucine rich repeat protein 21, pseudogene ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 5:135,930,297...135,941,996
Ensembl chr 5:135,930,317...135,951,591
JBrowse link
G FBXL22 F-box and leucine rich repeat protein 22 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:63,597,387...63,603,432
Ensembl chr15:63,597,353...63,602,428
JBrowse link
G FBXL3 F-box and leucine rich repeat protein 3 ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr13:76,992,597...77,027,164
Ensembl chr13:76,992,598...77,027,195
JBrowse link
G FBXL6 F-box and leucine rich repeat protein 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:144,355,431...144,358,472
Ensembl chr 8:144,355,431...144,359,376
JBrowse link
G FBXL8 F-box and leucine rich repeat protein 8 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:67,159,957...67,164,174
Ensembl chr16:67,159,932...67,164,570
JBrowse link
G ID2 inhibitor of DNA binding 2 ISS UniProtKB GO_REF:0000024 NCBI chr 2:8,682,056...8,684,461
Ensembl chr 2:8,678,845...8,684,461
JBrowse link
G MTA1 metastasis associated 1 ISS UniProtKB GO_REF:0000024 NCBI chr14:105,419,827...105,470,729
Ensembl chr14:105,419,820...105,470,729
JBrowse link
G NR2F6 nuclear receptor subfamily 2 group F member 6 IEA Ensembl GO_REF:0000107 NCBI chr19:17,231,883...17,245,919
Ensembl chr19:17,231,883...17,245,940
JBrowse link
G OPN4 opsin 4 ISO (MGI:5925970|PMID:26320947) MGI PMID:26320947 MGI:5925970 NCBI chr10:86,653,495...86,666,460
Ensembl chr10:86,654,547...86,666,848
JBrowse link
G OPN5 opsin 5 ISS UniProt GO_REF:0000024 NCBI chr 6:47,782,037...47,831,088
Ensembl chr 6:47,781,982...47,832,780
JBrowse link
G PDE6B phosphodiesterase 6B ISS UniProt GO_REF:0000024 NCBI chr 4:587,325...670,892
Ensembl chr 4:625,584...670,782
JBrowse link
G PER1 period circadian regulator 1 ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr17:8,140,470...8,156,360
Ensembl chr17:8,140,472...8,156,506
JBrowse link
G PER2 period circadian regulator 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:238,244,038...238,290,102
Ensembl chr 2:238,244,044...238,290,102
JBrowse link
G PER3 period circadian regulator 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:7,784,285...7,845,181
Ensembl chr 1:7,784,320...7,845,177
JBrowse link
G PML PML nuclear body scaffold ISS UniProtKB GO_REF:0000024 NCBI chr15:73,994,716...74,047,827
Ensembl chr15:73,994,673...74,047,827
JBrowse link
G PPP1CA protein phosphatase 1 catalytic subunit alpha ISS UniProtKB GO_REF:0000024 NCBI chr11:67,398,183...67,401,858
Ensembl chr11:67,398,183...67,421,183
JBrowse link
G PPP1CB protein phosphatase 1 catalytic subunit beta ISS UniProtKB GO_REF:0000024 NCBI chr 2:28,751,604...28,802,940
Ensembl chr 2:28,751,640...28,802,940
JBrowse link
G PPP1CC protein phosphatase 1 catalytic subunit gamma ISS UniProtKB GO_REF:0000024 NCBI chr12:110,708,369...110,742,914
Ensembl chr12:110,719,680...110,742,939
JBrowse link
G RBM4 RNA binding motif protein 4 ISS UniProtKB GO_REF:0000024 NCBI chr11:66,638,703...66,668,380
Ensembl chr11:66,638,617...66,668,374
Ensembl chr11:66,638,617...66,668,374
JBrowse link
G RBM4B RNA binding motif protein 4B ISS UniProtKB GO_REF:0000024 NCBI chr11:66,664,998...66,677,887
Ensembl chr11:66,664,998...66,677,887
JBrowse link
G SIK1 salt inducible kinase 1 ISS UniProtKB GO_REF:0000024 NCBI chr21:43,414,483...43,427,131
Ensembl chr21:43,414,483...43,427,131
JBrowse link
G SIK1B salt inducible kinase 1B (putative) ISS UniProtKB GO_REF:0000024 NCBI chr21:6,111,131...6,123,778
Ensembl chr21:6,111,131...6,123,778
JBrowse link
G TP53 tumor protein p53 ISS UniProtKB GO_REF:0000024 NCBI chr17:7,668,402...7,687,550
Ensembl chr17:7,661,779...7,687,538
Ensembl chr17:7,661,779...7,687,538
JBrowse link
G USP2 ubiquitin specific peptidase 2 ISS UniProtKB GO_REF:0000024 NCBI chr11:119,355,215...119,381,690
Ensembl chr11:119,355,215...119,381,711
JBrowse link
long-day photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGRP agouti related neuropeptide IEA Ensembl GO_REF:0000107 NCBI chr16:67,482,571...67,483,547
Ensembl chr16:67,482,571...67,483,813
Ensembl chr16:67,482,571...67,483,813
JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEDD4 NEDD4 E3 ubiquitin protein ligase IMP (PMID:17996703) BHF-UCL PMID:17996703 NCBI chr15:55,826,917...55,993,612
Ensembl chr15:55,826,922...55,993,746
JBrowse link
optokinetic behavior term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXA1 homeobox A1 IDA (PMID:16155570) DFLAT PMID:16155570 NCBI chr 7:27,092,993...27,096,000
Ensembl chr 7:27,093,313...27,095,996
Ensembl chr 7:27,093,313...27,095,996
JBrowse link
G OPN4 opsin 4 ISS UniProt GO_REF:0000024 NCBI chr10:86,653,495...86,666,460
Ensembl chr10:86,654,547...86,666,848
JBrowse link
photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AANAT aralkylamine N-acetyltransferase IEA Ensembl GO_REF:0000107 NCBI chr17:76,453,351...76,470,797
Ensembl chr17:76,453,351...76,470,117
JBrowse link
G CLOCK clock circadian regulator TAS (PMID:10198158) PINC PMID:10198158 NCBI chr 4:55,427,903...55,547,138
Ensembl chr 4:55,427,903...55,546,909
JBrowse link
G DRD4 dopamine receptor D4 ISO RGD PMID:18321474 RGD:2301031 NCBI chr11:637,269...640,706
Ensembl chr11:637,269...640,706
JBrowse link
G FOSL2 FOS like 2, AP-1 transcription factor subunit ISO RGD PMID:16962714 RGD:2293767 NCBI chr 2:28,392,855...28,417,317
Ensembl chr 2:28,392,448...28,417,317
JBrowse link
G NMU neuromedin U IEA Ensembl GO_REF:0000107 NCBI chr 4:55,595,231...55,636,793
Ensembl chr 4:55,595,229...55,636,698
JBrowse link
G NR1D1 nuclear receptor subfamily 1 group D member 1 ISO RGD PMID:21076970 RGD:10448986 NCBI chr17:40,092,793...40,100,589
Ensembl chr17:40,092,793...40,100,589
JBrowse link
phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARRB1 arrestin beta 1 IEA Ensembl GO_REF:0000107 NCBI chr11:75,260,122...75,351,662
Ensembl chr11:75,260,122...75,351,705
JBrowse link
G ASIC2 acid sensing ion channel subunit 2 IEA Ensembl GO_REF:0000107 NCBI chr17:33,013,087...34,156,768
Ensembl chr17:33,013,087...34,174,964
JBrowse link
G CABP4 calcium binding protein 4 IEA Ensembl GO_REF:0000107 NCBI chr11:67,452,403...67,461,774
Ensembl chr11:67,452,406...67,460,313
JBrowse link
G CDS1 CDP-diacylglycerol synthase 1 NAS (PMID:9806839) UniProtKB PMID:9806839 NCBI chr 4:84,582,931...84,651,334
Ensembl chr 4:84,583,127...84,651,334
JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 ISO (MGI:3527312|PMID:15634774) MGI PMID:15634774 MGI:3527312 NCBI chr16:57,882,340...57,971,128
Ensembl chr16:57,882,340...57,971,128
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 ISO (MGI:1928441|PMID:11095744), (MGI:3609280|PMID:16249514), (MGI:3615719|PMID:15073279), (MGI:3757777|PMID:17881533), (MGI:3772638|PMID:11853756), (MGI:3778702|PMID:18367617) MGI PMID:11095744, PMID:11853756, PMID:15073279, PMID:16249514, PMID:17881533, PMID:18367617 MGI:1928441, MGI:3609280, MGI:3615719, MGI:3757777, MGI:3772638, MGI:3778702 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 NAS (PMID:2534964) UniProtKB PMID:2534964 NCBI chr 1:109,603,091...109,619,616
Ensembl chr 1:109,603,254...109,619,929
JBrowse link
G GNGT1 G protein subunit gamma transducin 1 ISO (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chr 7:93,906,567...93,911,265
Ensembl chr 7:93,591,573...93,911,265
JBrowse link
G GNGT2 G protein subunit gamma transducin 2 NAS (PMID:9286705) UniProtKB PMID:9286705 NCBI chr17:49,206,234...49,210,574
Ensembl chr17:49,202,791...49,210,574
JBrowse link
G GPR52 G protein-coupled receptor 52 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:174,447,964...174,449,545
Ensembl chr 1:174,447,964...174,449,545
JBrowse link
G GPR88 G protein-coupled receptor 88 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:100,538,139...100,542,021
Ensembl chr 1:100,538,139...100,542,021
JBrowse link
G GUCA1A guanylate cyclase activator 1A IEA Ensembl GO_REF:0000107 NCBI chr 6:42,173,364...42,180,056
Ensembl chr 6:42,155,406...42,180,049
Ensembl chr 6:42,155,406...42,180,049
JBrowse link
G GUCA1ANB GUCA1A neighbor ISO (MGI:2664110|PMID:11493703), (MGI:3584028|PMID:15173221) MGI PMID:11493703, PMID:15173221 MGI:2664110, MGI:3584028 NCBI chr 6:42,155,406...42,163,418
Ensembl chr 6:42,155,406...42,163,439
Ensembl chr 6:42,155,406...42,163,439
Ensembl chr 6:42,155,406...42,163,439
Ensembl chr 6:42,155,406...42,163,439
JBrowse link
G GUCA1B guanylate cyclase activator 1B IEA Ensembl GO_REF:0000107 NCBI chr 6:42,183,284...42,194,956
Ensembl chr 6:42,183,284...42,194,956
JBrowse link
G LOC118142757 GUCA1ANB-GUCA1A readthrough IEA Ensembl GO_REF:0000107 NCBI chr 6:42,155,406...42,180,056 JBrowse link
G NR2E3 nuclear receptor subfamily 2 group E member 3 TAS (PMID:10220376) PINC PMID:10220376 NCBI chr15:71,810,554...71,818,253
Ensembl chr15:71,792,638...71,818,259
JBrowse link
G OPN1LW opsin 1, long wave sensitive IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr  X:154,144,243...154,159,032
Ensembl chr  X:154,144,243...154,159,032
JBrowse link
G OPN1MW opsin 1, medium wave sensitive IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr  X:154,182,596...154,196,861
Ensembl chr  X:154,182,596...154,196,861
JBrowse link
G OPN1MW2 opsin 1, medium wave sensitive 2 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr  X:154,219,734...154,233,286
Ensembl chr  X:154,219,756...154,233,286
JBrowse link
G OPN1MW3 opsin 1, medium wave sensitive 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:154,257,560...154,271,090
Ensembl chr  X:154,257,538...154,271,805
JBrowse link
G OPN1SW opsin 1, short wave sensitive IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:128,772,485...128,775,794
Ensembl chr 7:128,772,491...128,775,790
JBrowse link
G OPN3 opsin 3 NAS
IBA
(PMID:10234000)
(PMID:21873635)
UniProtKB
GO_Central
PMID:10234000, PMID:21873635 NCBI chr 1:241,593,124...241,640,369
Ensembl chr 1:241,590,102...241,677,376
JBrowse link
G OPN4 opsin 4 IDA
IBA
IEA
(PMID:15674244)
(PMID:21873635)
UniProtKB
GO_Central
UniProt
PMID:15674244, PMID:21873635 GO_REF:0000043 NCBI chr10:86,653,495...86,666,460
Ensembl chr10:86,654,547...86,666,848
JBrowse link
G OPN5 opsin 5 ISS
IBA
IEA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000024, GO_REF:0000043 NCBI chr 6:47,782,037...47,831,088
Ensembl chr 6:47,781,982...47,832,780
JBrowse link
G PDC phosducin TAS (PMID:8288249) PINC PMID:8288249 NCBI chr 1:186,443,566...186,461,114
Ensembl chr 1:186,443,566...186,461,114
JBrowse link
G PITPNM1 phosphatidylinositol transfer protein membrane associated 1 TAS (PMID:9680295) PINC PMID:9680295 NCBI chr11:67,491,760...67,505,372
Ensembl chr11:67,491,768...67,506,263
JBrowse link
G PLEKHB1 pleckstrin homology domain containing B1 NAS (PMID:10585447) UniProtKB PMID:10585447 NCBI chr11:73,646,581...73,662,819
Ensembl chr11:73,646,178...73,662,819
JBrowse link
G RCVRN recoverin IEA Ensembl GO_REF:0000107 NCBI chr17:9,896,320...9,905,271
Ensembl chr17:9,896,320...9,905,271
JBrowse link
G RGR retinal G protein coupled receptor IEA
IBA
(PMID:21873635) InterPro
GO_Central
UniProt
PMID:21873635 GO_REF:0000002, GO_REF:0000043 NCBI chr10:84,243,741...84,259,960
Ensembl chr10:84,230,666...84,259,960
JBrowse link
G RHO rhodopsin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344
JBrowse link
G RRH retinal pigment epithelium-derived rhodopsin homolog IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:109,827,972...109,844,942
Ensembl chr 4:109,827,972...109,849,123
JBrowse link
G TRPC3 transient receptor potential cation channel subfamily C member 3 TAS (PMID:9215637) PINC PMID:9215637 NCBI chr 4:121,874,481...121,952,060
Ensembl chr 4:121,874,481...121,952,060
JBrowse link
G UNC119 unc-119 lipid binding chaperone TAS (PMID:9538874) PINC PMID:9538874 NCBI chr17:28,546,707...28,552,633
Ensembl chr17:28,546,708...28,552,631
Ensembl chr17:28,546,708...28,552,631
JBrowse link
phototransduction, UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OPN5 opsin 5 IMP (PMID:22043319) UniProt PMID:22043319 NCBI chr 6:47,782,037...47,831,088
Ensembl chr 6:47,781,982...47,832,780
JBrowse link
phototransduction, visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 TAS (PMID:9202155) PINC PMID:9202155 NCBI chr 1:93,992,834...94,121,148
Ensembl chr 1:93,992,834...94,121,148
JBrowse link
G AIPL1 aryl hydrocarbon receptor interacting protein like 1 IEA Ensembl GO_REF:0000107 NCBI chr17:6,423,738...6,435,121
Ensembl chr17:6,393,693...6,435,199
JBrowse link
G CHRM1 cholinergic receptor muscarinic 1 ISO (PMID:12196552) AgBase PMID:12196552 NCBI chr11:62,908,675...62,921,861
Ensembl chr11:62,908,679...62,921,807
JBrowse link
G GNA11 G protein subunit alpha 11 ISS AgBase GO_REF:0000024 NCBI chr19:3,094,362...3,123,999
Ensembl chr19:3,094,362...3,123,999
JBrowse link
G GNAQ G protein subunit alpha q ISS AgBase GO_REF:0000024 NCBI chr 9:77,716,097...78,031,811
Ensembl chr 9:77,716,097...78,031,811
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 IMP (PMID:17584859) UniProtKB PMID:17584859 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696
JBrowse link
G PDE6B phosphodiesterase 6B TAS (PMID:8394174) PINC PMID:8394174 NCBI chr 4:587,325...670,892
Ensembl chr 4:625,584...670,782
JBrowse link
G PDE6C phosphodiesterase 6C IEA Ensembl GO_REF:0000107 NCBI chr10:93,612,537...93,666,010
Ensembl chr10:93,612,537...93,666,010
JBrowse link
G RHO rhodopsin TAS (PMID:1418997) PINC PMID:1418997 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344
JBrowse link
G RP1 RP1 axonemal microtubule associated TAS (PMID:10391211) PINC PMID:10391211 NCBI chr 8:54,509,448...54,871,720
Ensembl chr 8:54,509,422...54,871,720
JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RHO rhodopsin ISO RGD PMID:2525480 RGD:6893558 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344
JBrowse link
regulation of mRNA stability involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPM1 nucleophosmin 1 IMP (PMID:12080348) UniProtKB PMID:12080348 NCBI chr 5:171,387,116...171,410,900
Ensembl chr 5:171,387,116...171,411,137
JBrowse link
regulation of rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIPL1 aryl hydrocarbon receptor interacting protein like 1 IEA Ensembl GO_REF:0000107 NCBI chr17:6,423,738...6,435,121
Ensembl chr17:6,393,693...6,435,199
JBrowse link
G CALM1 calmodulin 1 TAS Reactome Reactome:R-HSA-2514859 NCBI chr14:90,396,502...90,408,268
Ensembl chr14:90,396,502...90,408,268
JBrowse link
G CALM2 calmodulin 2 TAS Reactome Reactome:R-HSA-2514859 NCBI chr 2:47,160,082...47,176,936
Ensembl chr 2:47,160,083...47,176,921
JBrowse link
G CALM3 calmodulin 3 TAS Reactome Reactome:R-HSA-2514859 NCBI chr19:46,601,074...46,610,782
Ensembl chr19:46,601,074...46,610,782
JBrowse link
G CAMKMT calmodulin-lysine N-methyltransferase TAS Reactome Reactome:R-HSA-2514859 NCBI chr 2:44,361,714...44,772,592
Ensembl chr 2:44,361,947...44,772,592
JBrowse link
G CHURC1-FNTB CHURC1-FNTB readthrough TAS Reactome Reactome:R-HSA-2514859 NCBI chr14:64,914,361...65,062,655
Ensembl chr14:64,986,895...65,062,652
Ensembl chr14:64,986,895...65,062,652
JBrowse link
G CNGA1 cyclic nucleotide gated channel subunit alpha 1 TAS Reactome Reactome:R-HSA-2514859 NCBI chr 4:47,935,015...48,016,718
Ensembl chr 4:47,935,977...48,016,672
Ensembl chr 4:47,935,977...48,016,672
JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 TAS Reactome Reactome:R-HSA-2514859 NCBI chr16:57,882,340...57,971,128
Ensembl chr16:57,882,340...57,971,128
JBrowse link
G FNTA farnesyltransferase, CAAX box, alpha TAS Reactome Reactome:R-HSA-2514859 NCBI chr 8:43,056,323...43,085,785
Ensembl chr 8:43,034,194...43,085,788
JBrowse link
G FNTB farnesyltransferase, CAAX box, beta TAS Reactome Reactome:R-HSA-2514859 NCBI chr14:64,986,895...65,062,650
Ensembl chr14:64,986,895...65,062,652
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 TAS Reactome Reactome:R-HSA-2514859 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696
JBrowse link
G GRK1 G protein-coupled receptor kinase 1 TAS
IDA
IEA
(PMID:15946941) Reactome
UniProtKB
InterPro
PMID:15946941 GO_REF:0000002, Reactome:R-HSA-2514859 NCBI chr13:113,645,771...113,737,736
Ensembl chr13:113,667,219...113,737,736
JBrowse link
G GRK4 G protein-coupled receptor kinase 4 TAS Reactome Reactome:R-HSA-2514859 NCBI chr 4:2,963,504...3,040,760
Ensembl chr 4:2,963,571...3,040,760
JBrowse link
G GRK7 G protein-coupled receptor kinase 7 TAS Reactome Reactome:R-HSA-2514859 NCBI chr 3:141,763,408...141,819,352
Ensembl chr 3:141,778,148...141,818,490
JBrowse link
G GUCA1A guanylate cyclase activator 1A TAS Reactome Reactome:R-HSA-2514859 NCBI chr 6:42,173,364...42,180,056
Ensembl chr 6:42,155,406...42,180,049
Ensembl chr 6:42,155,406...42,180,049
JBrowse link
G GUCA1B guanylate cyclase activator 1B TAS Reactome Reactome:R-HSA-2514859 NCBI chr 6:42,183,284...42,194,956
Ensembl chr 6:42,183,284...42,194,956
JBrowse link
G GUCA1C guanylate cyclase activator 1C TAS Reactome Reactome:R-HSA-2514859 NCBI chr 3:108,907,644...108,955,195
Ensembl chr 3:108,907,792...108,953,879
JBrowse link
G GUCY2D guanylate cyclase 2D, retinal TAS Reactome Reactome:R-HSA-2514859 NCBI chr17:8,002,615...8,020,342
Ensembl chr17:8,002,615...8,020,342
Ensembl chr17:8,002,615...8,020,342
JBrowse link
G GUCY2F guanylate cyclase 2F, retinal TAS Reactome Reactome:R-HSA-2514859 NCBI chr  X:109,372,061...109,482,086
Ensembl chr  X:109,372,906...109,482,086
JBrowse link
G LOC118142757 GUCA1ANB-GUCA1A readthrough TAS Reactome Reactome:R-HSA-2514859 NCBI chr 6:42,155,406...42,180,056 JBrowse link
G METAP1 methionyl aminopeptidase 1 TAS Reactome Reactome:R-HSA-2514859 NCBI chr 4:98,995,693...99,063,109
Ensembl chr 4:98,995,659...99,062,809
JBrowse link
G METAP2 methionyl aminopeptidase 2 TAS Reactome Reactome:R-HSA-2514859 NCBI chr12:95,474,152...95,515,839
Ensembl chr12:95,473,520...95,515,839
JBrowse link
G NMT1 N-myristoyltransferase 1 TAS Reactome Reactome:R-HSA-2514859 NCBI chr17:45,061,317...45,109,016
Ensembl chr17:45,051,610...45,109,016
JBrowse link
G NMT2 N-myristoyltransferase 2 TAS Reactome Reactome:R-HSA-2514859 NCBI chr10:15,104,588...15,168,693
Ensembl chr10:15,102,584...15,168,693
JBrowse link
G PDE6A phosphodiesterase 6A TAS Reactome Reactome:R-HSA-2514859 NCBI chr 5:149,857,953...149,944,793
Ensembl chr 5:149,857,953...149,944,793
JBrowse link
G PDE6B phosphodiesterase 6B TAS Reactome Reactome:R-HSA-2514859 NCBI chr 4:587,325...670,892
Ensembl chr 4:625,584...670,782
JBrowse link
G PDE6G phosphodiesterase 6G TAS Reactome Reactome:R-HSA-2514859 NCBI chr17:81,650,459...81,663,127
Ensembl chr17:81,650,459...81,663,112
JBrowse link
G PPEF1 protein phosphatase with EF-hand domain 1 TAS Reactome Reactome:R-HSA-2514859 NCBI chr  X:18,675,067...18,827,921
Ensembl chr  X:18,675,909...18,827,921
JBrowse link
G RHO rhodopsin TAS Reactome Reactome:R-HSA-2514859 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344
JBrowse link
G SAG S-antigen visual arrestin TAS Reactome Reactome:R-HSA-2514859 NCBI chr 2:233,307,816...233,347,066
Ensembl chr 2:233,307,816...233,347,055
JBrowse link
regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHEK1 checkpoint kinase 1 IEA
ISS
Ensembl
UniProtKB
GO_REF:0000024, GO_REF:0000107 NCBI chr11:125,624,910...125,676,256
Ensembl chr11:125,625,665...125,676,255
JBrowse link
regulation of translation involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPL26 ribosomal protein L26 IMP (PMID:16213212) CAFA PMID:16213212 NCBI chr17:8,377,516...8,383,193
Ensembl chr17:8,377,516...8,383,213
JBrowse link
response to blue light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPT1B carnitine palmitoyltransferase 1B ISS UniProt GO_REF:0000024 NCBI chr22:50,568,861...50,578,612
Ensembl chr22:50,568,861...50,578,465
JBrowse link
G DCT dopachrome tautomerase IDA (PMID:28842328) UniProt PMID:28842328 NCBI chr13:94,436,811...94,549,406
Ensembl chr13:94,436,811...94,479,682
JBrowse link
G KCNJ10 potassium inwardly rectifying channel subfamily J member 10 ISO RGD PMID:18450590 RGD:2326038 NCBI chr 1:160,037,467...160,070,160
Ensembl chr 1:159,998,651...160,070,160
JBrowse link
G OPN3 opsin 3 IMP
IDA
(PMID:28842328)
(PMID:30168605)
UniProt PMID:28842328, PMID:30168605 NCBI chr 1:241,593,124...241,640,369
Ensembl chr 1:241,590,102...241,677,376
JBrowse link
G TYR tyrosinase IDA (PMID:28842328) UniProt PMID:28842328 NCBI chr11:89,177,565...89,295,759
Ensembl chr11:89,177,875...89,295,759
JBrowse link
response to high light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MMP9 matrix metallopeptidase 9 ISO RGD PMID:17854381 RGD:8547925 NCBI chr20:46,008,908...46,016,561
Ensembl chr20:46,008,908...46,016,561
JBrowse link
G RDH13 retinol dehydrogenase 13 IEA Ensembl GO_REF:0000107 NCBI chr19:55,040,375...55,069,531
Ensembl chr19:55,039,108...55,071,291
JBrowse link
response to light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BDNF brain derived neurotrophic factor ISO RGD PMID:21076359 RGD:8655612 NCBI chr11:27,654,893...27,722,030
Ensembl chr11:27,654,893...27,722,058
JBrowse link
G CAT catalase IEA Ensembl GO_REF:0000107 NCBI chr11:34,438,934...34,472,060
Ensembl chr11:34,438,934...34,472,060
JBrowse link
G CNTF ciliary neurotrophic factor ISO RGD PMID:21076359 RGD:8655612 NCBI chr11:58,622,665...58,625,733
Ensembl chr11:58,622,665...58,625,733
JBrowse link
G EXT1 exostosin glycosyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr 8:117,794,490...118,111,826
Ensembl chr 8:117,794,490...118,111,853
Ensembl chr 8:117,794,490...118,111,853
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:109,603,091...109,619,616
Ensembl chr 1:109,603,254...109,619,929
JBrowse link
G KCNC1 potassium voltage-gated channel subfamily C member 1 IEA Ensembl GO_REF:0000107 NCBI chr11:17,734,781...17,783,057
Ensembl chr11:17,734,774...17,856,804
JBrowse link
G KCNC2 potassium voltage-gated channel subfamily C member 2 IEA Ensembl GO_REF:0000107 NCBI chr12:75,040,078...75,209,839
Ensembl chr12:75,040,077...75,209,868
Ensembl chr12:75,040,077...75,209,868
JBrowse link
G MT-ND3 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 IEA Ensembl GO_REF:0000107 NCBI chr MT:10,059...10,404
Ensembl chr MT:10,059...10,404
JBrowse link
G SLC24A1 solute carrier family 24 member 1 NAS (PMID:9856482) UniProtKB PMID:9856482 NCBI chr15:65,611,313...65,661,002
Ensembl chr15:65,611,366...65,660,995
JBrowse link
response to low light intensity stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:43,287,470...43,313,477
Ensembl chr 5:43,287,470...43,313,512
JBrowse link
G PRPH2 peripherin 2 ISO RGD PMID:8320859 RGD:8553226 NCBI chr 6:42,694,509...42,723,039
Ensembl chr 6:42,696,598...42,722,597
JBrowse link
response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRSK1 BR serine/threonine kinase 1 IDA (PMID:15150265) UniProtKB PMID:15150265 NCBI chr19:55,283,997...55,312,562
Ensembl chr19:55,282,072...55,312,562
JBrowse link
G C10orf90 chromosome 10 open reading frame 90 ISO (MGI:5285148|PMID:20843368) UniProt PMID:20843368 MGI:5285148 NCBI chr10:126,424,997...126,670,693
Ensembl chr10:126,424,997...126,798,708
JBrowse link
G CASP3 caspase 3 IEA Ensembl GO_REF:0000107 NCBI chr 4:184,627,696...184,649,447
Ensembl chr 4:184,627,696...184,649,509
JBrowse link
G CASP7 caspase 7 IEA Ensembl GO_REF:0000107 NCBI chr10:113,679,194...113,730,909
Ensembl chr10:113,679,162...113,730,907
JBrowse link
G CASP9 caspase 9 ISO (MGI:3691523|PMID:11092819) MGI PMID:11092819 MGI:3691523 NCBI chr 1:15,491,401...15,524,912
Ensembl chr 1:15,490,832...15,526,534
JBrowse link
G CAT catalase ISO RGD PMID:12592055 RGD:9179775 NCBI chr11:34,438,934...34,472,060
Ensembl chr11:34,438,934...34,472,060
JBrowse link
G CCAR2 cell cycle and apoptosis regulator 2 IMP (PMID:23352644) UniProtKB PMID:23352644 NCBI chr 8:22,604,740...22,621,514
Ensembl chr 8:22,604,632...22,621,514
JBrowse link
G CDKN1A cyclin dependent kinase inhibitor 1A ISO (MGI:2675761|PMID:12952892) MGI PMID:12952892 MGI:2675761 NCBI chr 6:36,676,463...36,687,332
Ensembl chr 6:36,676,460...36,687,339
Ensembl chr 6:36,676,460...36,687,339
JBrowse link
G CDKN2D cyclin dependent kinase inhibitor 2D IMP (PMID:15750620) BHF-UCL PMID:15750620 NCBI chr19:10,566,460...10,568,979
Ensembl chr19:10,566,460...10,569,059
JBrowse link
G CIRBP cold inducible RNA binding protein IDA (PMID:11574538) UniProtKB PMID:11574538 NCBI chr19:1,269,332...1,274,880
Ensembl chr19:1,259,384...1,274,880
JBrowse link
G DDB2 damage specific DNA binding protein 2 IDA
IBA
(PMID:12732143)
(PMID:21873635)
UniProtKB
GO_Central
PMID:12732143, PMID:21873635 NCBI chr11:47,214,969...47,239,218
Ensembl chr11:47,214,465...47,239,240
Ensembl chr11:47,214,465...47,239,240
JBrowse link
G DTL denticleless E3 ubiquitin protein ligase homolog IDA (PMID:18794347) UniProtKB PMID:18794347 NCBI chr 1:212,035,748...212,105,013
Ensembl chr 1:212,035,553...212,107,400
JBrowse link
G ELANE elastase, neutrophil expressed IDA (PMID:11928814) UniProtKB PMID:11928814 NCBI chr19:850,997...856,250
Ensembl chr19:851,014...856,247
JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:45,349,837...45,370,647
Ensembl chr19:45,349,837...45,370,918
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit IMP
IBA
(PMID:17509950)
(PMID:21873635)
UniProtKB
GO_Central
PMID:17509950, PMID:21873635 NCBI chr 2:127,257,290...127,294,166
Ensembl chr 2:127,257,290...127,294,166
Ensembl chr 2:127,257,290...127,294,166
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit IMP (PMID:16678501) UniProtKB PMID:16678501 NCBI chr16:13,920,137...13,952,348
Ensembl chr16:13,920,154...13,952,348
Ensembl chr16:13,920,154...13,952,348
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease IDA
IMP
(PMID:8710877)
(PMID:16167068)
UniProtKB PMID:8710877, PMID:16167068 NCBI chr13:102,846,032...102,875,995
Ensembl chr13:102,845,831...102,875,995
Ensembl chr13:102,845,831...102,875,995
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor IDA (PMID:16916636) UniProtKB PMID:16916636 NCBI chr10:49,434,881...49,539,538
Ensembl chr10:49,454,470...49,539,538
JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit IDA
IMP
(PMID:12732143)
(PMID:7664335)
UniProtKB PMID:7664335, PMID:12732143 NCBI chr 5:60,866,454...60,945,070
Ensembl chr 5:60,866,454...60,945,073
Ensembl chr 5:60,866,454...60,945,073
JBrowse link
G GTF2H2 general transcription factor IIH subunit 2 TAS (PMID:8194529) PINC PMID:8194529 NCBI chr 5:71,035,124...71,109,113
Ensembl chr 5:71,032,670...71,067,689
JBrowse link
G HUS1 HUS1 checkpoint clamp component IEA Ensembl GO_REF:0000107 NCBI chr 7:47,962,980...47,979,619
Ensembl chr 7:47,963,288...47,979,615
JBrowse link
G MAP2K7 mitogen-activated protein kinase kinase 7 IDA (PMID:9535930) UniProtKB PMID:9535930 NCBI chr19:7,903,785...7,914,478
Ensembl chr19:7,903,843...7,914,478
JBrowse link
G MAP4K3 mitogen-activated protein kinase kinase kinase kinase 3 IDA (PMID:9275185) UniProtKB PMID:9275185 NCBI chr 2:39,248,941...39,437,312
Ensembl chr 2:39,249,266...39,437,301
JBrowse link
G MAPK8 mitogen-activated protein kinase 8 IDA (PMID:14967141) MGI PMID:14967141 NCBI chr10:48,306,673...48,439,360
Ensembl chr10:48,306,639...48,439,360
JBrowse link
G MEN1 menin 1 IDA (PMID:16690369) UniProtKB PMID:16690369 NCBI chr11:64,803,514...64,811,294
Ensembl chr11:64,803,510...64,811,294
JBrowse link
G MSH6 mutS homolog 6 ISS BHF-UCL GO_REF:0000024 NCBI chr 2:47,783,145...47,806,954
Ensembl chr 2:47,695,530...47,810,101
Ensembl chr 2:47,695,530...47,810,101
JBrowse link
G PCLAF PCNA clamp associated factor IDA (PMID:23000965) UniProtKB PMID:23000965 NCBI chr15:64,364,304...64,387,687
Ensembl chr15:64,364,304...64,387,687
JBrowse link
G PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 ISO (MGI:2675761|PMID:12952892) MGI PMID:12952892 MGI:2675761 NCBI chr18:59,899,996...59,904,305
Ensembl chr18:59,899,948...59,904,306
Ensembl chr18:59,899,948...59,904,306
JBrowse link
G PML PML nuclear body scaffold IEA Ensembl GO_REF:0000107 NCBI chr15:73,994,716...74,047,827
Ensembl chr15:73,994,673...74,047,827
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit TAS (PMID:3146346) PINC PMID:3146346 NCBI chr19:50,384,291...50,418,018
Ensembl chr19:50,384,204...50,418,018
JBrowse link
G PRIMPOL primase and DNA directed polymerase IDA
IBA
(PMID:24240614), (PMID:24267451)
(PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:24240614, PMID:24267451 NCBI chr 4:184,649,672...184,694,952
Ensembl chr 4:184,649,667...184,694,963
JBrowse link
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:40,759,379...40,798,195
Ensembl chr 5:40,759,379...40,798,374
JBrowse link
G RAD18 RAD18 E3 ubiquitin protein ligase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:8,877,075...8,969,249
Ensembl chr 3:8,775,402...8,963,773
JBrowse link
G REV1 REV1 DNA directed polymerase IDA (PMID:11485998) UniProtKB PMID:11485998 NCBI chr 2:99,400,477...99,490,123
Ensembl chr 2:99,400,475...99,490,035
JBrowse link
G RO60 Ro60, Y RNA binding protein IEA Ensembl GO_REF:0000107 NCBI chr 1:193,059,454...193,091,777
Ensembl chr 1:193,059,454...193,091,777
Ensembl chr 1:193,059,454...193,091,777
JBrowse link
G RPAIN RPA interacting protein IDA (PMID:16135809) MGI PMID:16135809 NCBI chr17:5,420,167...5,432,879
Ensembl chr17:5,419,641...5,432,876
JBrowse link
G SERPINB13 serpin family B member 13 TAS (PMID:9297979) PINC PMID:9297979 NCBI chr18:63,586,654...63,599,192
Ensembl chr18:63,586,989...63,604,639
JBrowse link
G SPRTN SprT-like N-terminal domain IDA (PMID:22681887), (PMID:22894931), (PMID:22902628) UniProtKB PMID:22681887, PMID:22894931, PMID:22902628 NCBI chr 1:231,337,980...231,355,023
Ensembl chr 1:231,337,104...231,355,023
JBrowse link
G TIPIN TIMELESS interacting protein IEA Ensembl GO_REF:0000107 NCBI chr15:66,334,974...66,387,273
Ensembl chr15:66,336,191...66,386,746
JBrowse link
G TP53 tumor protein p53 ISO (MGI:3032464|PMID:14744935)
(MGI:2675761|PMID:12952892)
(MGI:1858868|PMID:10815637), (MGI:3691523|PMID:11092819)
RGD
MGI
PMID:10815637, PMID:11092819, PMID:12952892, PMID:14744935, PMID:17724205 MGI:1858868, MGI:2675761, MGI:3032464, MGI:3691523, RGD:2290562 NCBI chr17:7,668,402...7,687,550
Ensembl chr17:7,661,779...7,687,538
Ensembl chr17:7,661,779...7,687,538
JBrowse link
G TP53I13 tumor protein p53 inducible protein 13 IEP (PMID:14767535) UniProtKB PMID:14767535 NCBI chr17:29,567,180...29,573,157
Ensembl chr17:29,566,052...29,573,157
JBrowse link
G TREX1 three prime repair exonuclease 1 ISO (MGI:5908297|PMID:28351661) MGI PMID:28351661 MGI:5908297 NCBI chr 3:48,465,830...48,467,645
Ensembl chr 3:48,465,811...48,467,645
JBrowse link
G TRIM32 tripartite motif containing 32 ISS BHF-UCL GO_REF:0000024 NCBI chr 9:116,687,305...116,701,299
Ensembl chr 9:116,687,302...116,701,300
JBrowse link
G TYR tyrosinase IEA Ensembl GO_REF:0000107 NCBI chr11:89,177,565...89,295,759
Ensembl chr11:89,177,875...89,295,759
JBrowse link
G UACA uveal autoantigen with coiled-coil domains and ankyrin repeats ISO (MGI:3056865|PMID:15271982) MGI PMID:15271982 MGI:3056865 NCBI chr15:70,654,554...70,778,823
Ensembl chr15:70,654,554...70,763,558
JBrowse link
G UBE2A ubiquitin conjugating enzyme E2 A IGI (PMID:1717990) UniProtKB PMID:1717990 NCBI chr  X:119,574,563...119,584,423
Ensembl chr  X:119,574,536...119,591,083
JBrowse link
G UBE2B ubiquitin conjugating enzyme E2 B IGI (PMID:1717990) UniProtKB PMID:1717990 NCBI chr 5:134,371,569...134,392,108
Ensembl chr 5:134,371,469...134,392,108
JBrowse link
G UBE4B ubiquitination factor E4B IDA (PMID:11802788) UniProtKB PMID:11802788 NCBI chr 1:10,032,958...10,181,239
Ensembl chr 1:10,032,832...10,181,239
JBrowse link
G USF1 upstream transcription factor 1 ISS BHF-UCL GO_REF:0000024 NCBI chr 1:161,039,251...161,045,977
Ensembl chr 1:161,039,251...161,045,977
JBrowse link
G USP1 ubiquitin specific peptidase 1 IDA (PMID:18082604) UniProtKB PMID:18082604 NCBI chr 1:62,436,395...62,451,804
Ensembl chr 1:62,436,297...62,451,804
JBrowse link
G UVSSA UV stimulated scaffold protein A IMP
IBA
IEA
(PMID:22466610), (PMID:22466611), (PMID:22466612)
(PMID:21873635)
UniProtKB
GO_Central
InterPro
PMID:21873635, PMID:22466610, PMID:22466611, PMID:22466612 GO_REF:0000002 NCBI chr 4:1,341,998...1,388,049
Ensembl chr 4:1,347,208...1,395,989
Ensembl chr 4:1,347,208...1,395,989
JBrowse link
G XPA XPA, DNA damage recognition and repair factor ISO (MGI:3655576|PMID:10843671) MGI PMID:10843671 MGI:3655576 NCBI chr 9:97,654,398...97,697,403
Ensembl chr 9:97,674,909...97,697,357
Ensembl chr 9:97,674,909...97,697,357
JBrowse link
G ZRANB3 zinc finger RANBP2-type containing 3 IDA (PMID:22704558) UniProtKB PMID:22704558 NCBI chr 2:135,164,218...135,531,218
Ensembl chr 2:135,136,916...135,531,218
JBrowse link
response to UV-A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 IDA (PMID:18483258) BHF-UCL PMID:18483258 NCBI chr14:104,769,349...104,795,748
Ensembl chr14:104,769,349...104,795,751
JBrowse link
G CCND1 cyclin D1 IDA (PMID:18483258) BHF-UCL PMID:18483258 NCBI chr11:69,641,156...69,654,474
Ensembl chr11:69,641,156...69,654,474
Ensembl chr11:69,641,156...69,654,474
JBrowse link
G CRYAA crystallin alpha A ISO (MGI:1321356|PMID:9813033) MGI PMID:9813033 MGI:1321356 NCBI chr21:43,169,008...43,172,810
Ensembl chr21:43,169,008...43,172,805
JBrowse link
G EGFR epidermal growth factor receptor IDA (PMID:18483258) BHF-UCL PMID:18483258 NCBI chr 7:55,019,017...55,211,628
Ensembl chr 7:55,019,017...55,211,628
JBrowse link
response to UV-B term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator IEA Ensembl GO_REF:0000107 NCBI chr18:63,123,346...63,320,280
Ensembl chr18:63,123,346...63,320,128
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor IEA Ensembl GO_REF:0000107 NCBI chr10:49,434,881...49,539,538
Ensembl chr10:49,454,470...49,539,538
JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 IEA Ensembl GO_REF:0000107 NCBI chr21:39,342,315...39,349,088
Ensembl chr21:39,342,315...39,349,647
JBrowse link
G IL12A interleukin 12A IDA (PMID:8992506) UniProtKB PMID:8992506 NCBI chr 3:159,988,835...159,996,019
Ensembl chr 3:159,988,835...159,996,019
JBrowse link
G IL12B interleukin 12B IDA (PMID:8992506) UniProtKB PMID:8992506 NCBI chr 5:159,314,780...159,330,487
Ensembl chr 5:159,314,780...159,330,487
Ensembl chr 5:159,314,780...159,330,487
JBrowse link
G IVL involucrin IDA (PMID:16639001) UniProtKB PMID:16639001 NCBI chr 1:152,908,545...152,911,886
Ensembl chr 1:152,908,546...152,911,886
JBrowse link
G MSH2 mutS homolog 2 ISS BHF-UCL GO_REF:0000024 NCBI chr 2:47,403,067...47,634,501
Ensembl chr 2:47,403,067...47,663,146
Ensembl chr 2:47,403,067...47,663,146
JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit IDA (PMID:15616591) UniProtKB PMID:15616591 NCBI chr11:65,653,601...65,662,946
Ensembl chr11:65,653,597...65,663,090
JBrowse link
G TP53 tumor protein p53 ISO RGD PMID:22559303 RGD:8547754 NCBI chr17:7,668,402...7,687,550
Ensembl chr17:7,661,779...7,687,538
Ensembl chr17:7,661,779...7,687,538
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor IEA Ensembl GO_REF:0000107 NCBI chr 3:14,145,145...14,178,601
Ensembl chr 3:14,145,147...14,178,783
Ensembl chr 3:14,145,147...14,178,783
JBrowse link
response to UV-C term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAK1 BCL2 antagonist/killer 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:33,572,552...33,580,296
Ensembl chr 6:33,572,547...33,580,293
JBrowse link
G BCL3 BCL3 transcription coactivator IDA (PMID:16384933) UniProtKB PMID:16384933 NCBI chr19:44,742,620...44,760,044
Ensembl chr19:44,747,705...44,760,044
JBrowse link
G BRCA2 BRCA2 DNA repair associated IEA Ensembl GO_REF:0000107 NCBI chr13:32,315,508...32,400,268
Ensembl chr13:32,315,086...32,400,268
Ensembl chr13:32,315,086...32,400,268
JBrowse link
G DCUN1D3 defective in cullin neddylation 1 domain containing 3 IDA (PMID:18823379) UniProtKB PMID:18823379 NCBI chr16:20,854,925...20,900,358
Ensembl chr16:20,854,925...20,900,358
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease IMP (PMID:17208056) UniProtKB PMID:17208056 NCBI chr13:102,846,032...102,875,995
Ensembl chr13:102,845,831...102,875,995
Ensembl chr13:102,845,831...102,875,995
JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 IEA Ensembl GO_REF:0000107 NCBI chr21:39,342,315...39,349,088
Ensembl chr21:39,342,315...39,349,647
JBrowse link
G MAP3K4 mitogen-activated protein kinase kinase kinase 4 IMP (PMID:9305639) UniProtKB PMID:9305639 NCBI chr 6:160,991,521...161,117,385
Ensembl chr 6:160,991,727...161,117,385
JBrowse link
G POLH DNA polymerase eta IDA (PMID:17563354) UniProtKB PMID:17563354 NCBI chr 6:43,576,147...43,620,523
Ensembl chr 6:43,576,185...43,620,523
Ensembl chr 6:43,576,185...43,620,523
JBrowse link
G WRN WRN RecQ like helicase IDA (PMID:17563354) UniProtKB PMID:17563354 NCBI chr 8:31,033,749...31,176,138
Ensembl chr 8:31,033,788...31,176,138
Ensembl chr 8:31,033,788...31,176,138
JBrowse link
G YY1 YY1 transcription factor IMP (PMID:18026119) UniProtKB PMID:18026119 NCBI chr14:100,239,144...100,282,788
Ensembl chr14:100,238,298...100,282,788
JBrowse link
rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNGA1 cyclic nucleotide gated channel subunit alpha 1 TAS Reactome Reactome:R-HSA-2485179 NCBI chr 4:47,935,015...48,016,718
Ensembl chr 4:47,935,977...48,016,672
Ensembl chr 4:47,935,977...48,016,672
JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 TAS Reactome Reactome:R-HSA-2485179 NCBI chr16:57,882,340...57,971,128
Ensembl chr16:57,882,340...57,971,128
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 TAS Reactome Reactome:R-HSA-2485179 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696
JBrowse link
G GNB1 G protein subunit beta 1 TAS Reactome Reactome:R-HSA-2485179 NCBI chr 1:1,785,286...1,891,087
Ensembl chr 1:1,785,285...1,891,117
JBrowse link
G GNGT1 G protein subunit gamma transducin 1 TAS Reactome Reactome:R-HSA-2485179 NCBI chr 7:93,906,567...93,911,265
Ensembl chr 7:93,591,573...93,911,265
JBrowse link
G GRK1 G protein-coupled receptor kinase 1 TAS (PMID:1656454), (PMID:9147475) PINC PMID:1656454, PMID:9147475 NCBI chr13:113,645,771...113,737,736
Ensembl chr13:113,667,219...113,737,736
JBrowse link
G OPN4 opsin 4 ISO (MGI:4438311|PMID:19793992) MGI PMID:19793992 MGI:4438311 NCBI chr10:86,653,495...86,666,460
Ensembl chr10:86,654,547...86,666,848
JBrowse link
G PCP2 Purkinje cell protein 2 ISO (MGI:3817370|PMID:18768681) MGI PMID:18768681 MGI:3817370 NCBI chr19:7,631,614...7,637,026
Ensembl chr19:7,631,611...7,633,719
JBrowse link
G PDE6A phosphodiesterase 6A TAS Reactome Reactome:R-HSA-2485179 NCBI chr 5:149,857,953...149,944,793
Ensembl chr 5:149,857,953...149,944,793
JBrowse link
G PDE6B phosphodiesterase 6B TAS Reactome Reactome:R-HSA-2485179 NCBI chr 4:587,325...670,892
Ensembl chr 4:625,584...670,782
JBrowse link
G PDE6G phosphodiesterase 6G TAS Reactome Reactome:R-HSA-2485179 NCBI chr17:81,650,459...81,663,127
Ensembl chr17:81,650,459...81,663,112
JBrowse link
G RHO rhodopsin ISS UniProtKB GO_REF:0000024 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344
JBrowse link
G SAG S-antigen visual arrestin TAS (PMID:2550422), (PMID:7670478) PINC PMID:2550422, PMID:7670478 NCBI chr 2:233,307,816...233,347,066
Ensembl chr 2:233,307,816...233,347,055
JBrowse link
short-day photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPY neuropeptide Y ISO RGD PMID:19490367 RGD:6480663 NCBI chr 7:24,284,190...24,291,862
Ensembl chr 7:24,284,188...24,291,862
JBrowse link
UV protection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAT catalase IMP (PMID:16644728), (PMID:17053817) UniProtKB PMID:16644728, PMID:17053817 NCBI chr11:34,438,934...34,472,060
Ensembl chr11:34,438,934...34,472,060
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr19:45,407,334...45,451,547
Ensembl chr19:45,407,333...45,478,828
Ensembl chr19:45,407,333...45,478,828
JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit IGI (PMID:2835663) MGI PMID:2835663 NCBI chr19:45,349,837...45,370,647
Ensembl chr19:45,349,837...45,370,918
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit IEA Ensembl GO_REF:0000107 NCBI chr 2:127,257,290...127,294,166
Ensembl chr 2:127,257,290...127,294,166
Ensembl chr 2:127,257,290...127,294,166
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr16:13,920,137...13,952,348
Ensembl chr16:13,920,154...13,952,348
Ensembl chr16:13,920,154...13,952,348
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease IGI (PMID:7510366) MGI PMID:7510366 NCBI chr13:102,846,032...102,875,995
Ensembl chr13:102,845,831...102,875,995
Ensembl chr13:102,845,831...102,875,995
JBrowse link
G FEN1 flap structure-specific endonuclease 1 TAS (PMID:8007985) PINC PMID:8007985 NCBI chr11:61,792,911...61,797,238
Ensembl chr11:61,792,911...61,797,238
JBrowse link
G GPX1 glutathione peroxidase 1 IMP (PMID:17097614) BHF-UCL PMID:17097614 NCBI chr 3:49,357,176...49,358,353
Ensembl chr 3:49,357,176...49,358,358
JBrowse link
G MC1R melanocortin 1 receptor TAS (PMID:7581459) PINC PMID:7581459 NCBI chr16:89,918,862...89,920,972
Ensembl chr16:89,912,119...89,920,973
Ensembl chr16:89,912,119...89,920,973
JBrowse link
G MFAP4 microfibril associated protein 4 IDA (PMID:22355679) BHF-UCL PMID:22355679 NCBI chr17:19,383,445...19,387,190
Ensembl chr17:19,383,442...19,387,240
Ensembl chr17:19,383,442...19,387,240
JBrowse link
G SCARA3 scavenger receptor class A member 3 TAS (PMID:9580669) PINC PMID:9580669 NCBI chr 8:27,633,665...27,736,594
Ensembl chr 8:27,633,868...27,676,776
JBrowse link
G SDF4 stromal cell derived factor 4 ISS (PMID:18355758) BHF-UCL PMID:18355758 NCBI chr 1:1,216,908...1,232,005
Ensembl chr 1:1,216,908...1,232,067
JBrowse link
G XPA XPA, DNA damage recognition and repair factor IDA
IMP
(PMID:1601884) CAFA PMID:1601884 NCBI chr 9:97,654,398...97,697,403
Ensembl chr 9:97,674,909...97,697,357
Ensembl chr 9:97,674,909...97,697,357
JBrowse link
UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR5 actin related protein 5 IMP (PMID:20855601) UniProtKB PMID:20855601 NCBI chr20:38,748,460...38,772,520
Ensembl chr20:38,748,460...38,772,520
JBrowse link
G CUL4B cullin 4B IDA (PMID:22334663) UniProtKB PMID:22334663 NCBI chr  X:120,523,858...120,575,532
Ensembl chr  X:120,524,612...120,575,794
Ensembl chr  X:120,524,612...120,575,794
Ensembl chr  X:120,524,612...120,575,794
JBrowse link
G DDB1 damage specific DNA binding protein 1 IDA (PMID:22334663) UniProtKB PMID:22334663 NCBI chr11:61,299,451...61,333,105
Ensembl chr11:61,299,451...61,342,596
JBrowse link
G DDB2 damage specific DNA binding protein 2 IDA (PMID:22334663) UniProtKB PMID:22334663 NCBI chr11:47,214,969...47,239,218
Ensembl chr11:47,214,465...47,239,240
Ensembl chr11:47,214,465...47,239,240
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:45,407,334...45,451,547
Ensembl chr19:45,407,333...45,478,828
Ensembl chr19:45,407,333...45,478,828
JBrowse link
G H2AW H2A.W histone IMP (PMID:22334663) UniProtKB PMID:22334663 NCBI chr 1:228,457,364...228,457,873
Ensembl chr 1:228,456,979...228,457,873
JBrowse link
G INO80 INO80 complex ATPase subunit IMP (PMID:20855601) UniProtKB PMID:20855601 NCBI chr15:40,978,880...41,117,778
Ensembl chr15:40,978,880...41,116,280
JBrowse link
G MC1R melanocortin 1 receptor IDA (PMID:18292087) BHF-UCL PMID:18292087 NCBI chr16:89,918,862...89,920,972
Ensembl chr16:89,912,119...89,920,973
Ensembl chr16:89,912,119...89,920,973
JBrowse link
G SIRT1 sirtuin 1 IMP (PMID:20670893) CACAO PMID:20670893 NCBI chr10:67,884,656...67,918,390
Ensembl chr10:67,884,656...67,918,390
JBrowse link
G XPA XPA, DNA damage recognition and repair factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:97,654,398...97,697,403
Ensembl chr 9:97,674,909...97,697,357
Ensembl chr 9:97,674,909...97,697,357
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor IDA (PMID:8077226) CACAO PMID:8077226 NCBI chr 3:14,145,145...14,178,601
Ensembl chr 3:14,145,147...14,178,783
Ensembl chr 3:14,145,147...14,178,783
JBrowse link
UV-damage excision repair, DNA incision term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G XPC XPC complex subunit, DNA damage recognition and repair factor IEA Ensembl GO_REF:0000107 NCBI chr 3:14,145,145...14,178,601
Ensembl chr 3:14,145,147...14,178,783
Ensembl chr 3:14,145,147...14,178,783
JBrowse link
visual behavior term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DYNLRB1 dynein light chain roadblock-type 1 ISS UniProtKB GO_REF:0000024 NCBI chr20:34,515,602...34,540,958
Ensembl chr20:34,516,409...34,540,958
JBrowse link
G NPHP1 nephrocystin 1 NAS (PMID:12205563) UniProtKB PMID:12205563 NCBI chr 2:110,123,348...110,205,013
Ensembl chr 2:110,122,311...110,205,066
JBrowse link
G NPHP4 nephrocystin 4 NAS (PMID:12205563) UniProtKB PMID:12205563 NCBI chr 1:5,862,810...5,992,425
Ensembl chr 1:5,862,811...5,992,473
JBrowse link
G SLC1A2 solute carrier family 1 member 2 IEA Ensembl GO_REF:0000107 NCBI chr11:35,251,205...35,420,058
Ensembl chr11:35,251,205...35,420,063
JBrowse link
visual learning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA7 ATP binding cassette subfamily A member 7 ISS ARUK-UCL GO_REF:0000024 NCBI chr19:1,040,107...1,065,572
Ensembl chr19:1,039,997...1,065,572
Ensembl chr19:1,039,997...1,065,572
JBrowse link
G ABCC8 ATP binding cassette subfamily C member 8 IEA Ensembl GO_REF:0000107 NCBI chr11:17,392,498...17,476,849
Ensembl chr11:17,392,498...17,476,879
JBrowse link
G ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase ISO (MGI:5315777|PMID:22357865) MGI PMID:22357865 MGI:5315777 NCBI chr 1:179,099,330...179,229,693
Ensembl chr 1:179,099,330...179,229,684
JBrowse link
G ADAM2 ADAM metallopeptidase domain 2 IEA Ensembl GO_REF:0000107 NCBI chr 8:39,743,735...39,838,227
Ensembl chr 8:39,743,735...39,838,289
JBrowse link
G ADRA1B adrenoceptor alpha 1B ISO (MGI:1932224|PMID:11222061) MGI PMID:11222061 MGI:1932224 NCBI chr 5:159,916,482...159,989,205
Ensembl chr 5:159,865,080...159,973,012
JBrowse link
G AP1S2 adaptor related protein complex 1 subunit sigma 2 ISO (MGI:5617942|PMID:20203623) MGI PMID:20203623 MGI:5617942 NCBI chr  X:15,825,806...15,854,966
Ensembl chr  X:15,825,806...15,854,931
JBrowse link
G APBB1 amyloid beta precursor protein binding family B member 1 ISO (MGI:3522016|PMID:14689444) MGI PMID:14689444 MGI:3522016 NCBI chr11:6,395,124...6,419,453
Ensembl chr11:6,395,124...6,419,414
JBrowse link
G APP amyloid beta precursor protein ISS UniProtKB GO_REF:0000024 NCBI chr21:25,880,550...26,171,128
Ensembl chr21:25,880,550...26,171,128
JBrowse link
G ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:160,115,759...160,143,591
Ensembl chr 1:160,115,759...160,143,591
JBrowse link
G ATP1A3 ATPase Na+/K+ transporting subunit alpha 3 ISO (MGI:3696486|PMID:17234593) MGI PMID:17234593 MGI:3696486 NCBI chr19:41,966,582...41,994,230
Ensembl chr19:41,966,582...41,997,497
JBrowse link
G ATXN1 ataxin 1 ISO (MGI:1270078|PMID:9651231)
(MGI:4818500|PMID:20628574)
MGI PMID:9651231, PMID:20628574 MGI:1270078, MGI:4818500 NCBI chr 6:16,299,112...16,761,490
Ensembl chr 6:16,299,112...16,761,491
JBrowse link
G B4GALT2 beta-1,4-galactosyltransferase 2 ISO (MGI:3849110|PMID:19265195) MGI PMID:19265195 MGI:3849110 NCBI chr 1:43,979,210...43,991,171
Ensembl chr 1:43,978,943...43,991,170
JBrowse link
G BRAF B-Raf proto-oncogene, serine/threonine kinase IEA Ensembl GO_REF:0000107 NCBI chr 7:140,713,328...140,924,929
Ensembl chr 7:140,719,327...140,924,929
Ensembl chr 7:140,719,327...140,924,929
JBrowse link
G CACNA1C calcium voltage-gated channel subunit alpha1 C ISO (MGI:3607037|PMID:16251435) MGI PMID:16251435 MGI:3607037 NCBI chr12:1,969,552...2,697,950
Ensembl chr12:1,970,786...2,697,950
JBrowse link
G CACNA1E calcium voltage-gated channel subunit alpha1 E ISO (MGI:1932239|PMID:11263998) MGI PMID:11263998 MGI:1932239 NCBI chr 1:181,317,712...181,808,084
Ensembl chr 1:181,317,690...181,808,084
JBrowse link
G CCK cholecystokinin IEA Ensembl GO_REF:0000107 NCBI chr 3:42,257,826...42,266,185
Ensembl chr 3:42,257,825...42,266,185
JBrowse link
G CDK5 cyclin dependent kinase 5 IEA Ensembl GO_REF:0000107 NCBI chr 7:151,053,815...151,057,897
Ensembl chr 7:151,053,815...151,057,897
JBrowse link
G CHRNB2 cholinergic receptor nicotinic beta 2 subunit IMP (PMID:15964197) UniProtKB PMID:15964197 NCBI chr 1:154,567,778...154,584,708
Ensembl chr 1:154,567,778...154,580,013
JBrowse link
G CKAP5 cytoskeleton associated protein 5 ISO (MGI:5546446|PMID:23936366) MGI PMID:23936366 MGI:5546446 NCBI chr11:46,743,048...46,846,280
Ensembl chr11:46,743,048...46,846,308
JBrowse link
G CREB1 cAMP responsive element binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:207,529,943...207,605,988
Ensembl chr 2:207,529,737...207,605,988
JBrowse link
G CRHR1 corticotropin releasing hormone receptor 1 ISO postnatal blockade improves adult learning and memory RGD PMID:15932935 RGD:1626241 NCBI chr17:45,784,320...45,835,828
Ensembl chr17:45,784,280...45,835,828
JBrowse link
G CTNS cystinosin, lysosomal cystine transporter IEA Ensembl GO_REF:0000107 NCBI chr17:3,636,459...3,663,103
Ensembl chr17:3,636,459...3,661,542
Ensembl chr17:3,636,459...3,661,542
Ensembl chr17:3,636,459...3,661,542
JBrowse link
G DBH dopamine beta-hydroxylase IEA Ensembl GO_REF:0000107 NCBI chr 9:133,636,363...133,659,329
Ensembl chr 9:133,636,363...133,659,329
JBrowse link
G DCDC2 doublecortin domain containing 2 ISO (MGI:5442271|PMID:21883923), (MGI:5698331|PMID:25130614) MGI PMID:21883923, PMID:25130614 MGI:5442271, MGI:5698331 NCBI chr 6:24,171,755...24,383,292
Ensembl chr 6:24,171,755...24,358,059
JBrowse link
G DDHD2 DDHD domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr 8:38,231,585...38,273,922
Ensembl chr 8:38,225,218...38,275,558
JBrowse link
G DEAF1 DEAF1 transcription factor ISO (MGI:5576037|PMID:24726472) UniProt PMID:24726472 MGI:5576037 NCBI chr11:644,220...707,083
Ensembl chr11:644,233...706,715
JBrowse link
G DRD1 dopamine receptor D1 ISS BHF-UCL GO_REF:0000024 NCBI chr 5:175,440,036...175,444,182
Ensembl chr 5:175,440,036...175,444,182
JBrowse link
G DRD2 dopamine receptor D2 ISS BHF-UCL GO_REF:0000024 NCBI chr11:113,409,605...113,475,398
Ensembl chr11:113,409,605...113,475,691
JBrowse link
G DRD3 dopamine receptor D3 ISS BHF-UCL GO_REF:0000024 NCBI chr 3:114,127,580...114,199,407
Ensembl chr 3:114,127,580...114,199,407
Ensembl chr 3:114,127,580...114,199,407
JBrowse link
G DRD5 dopamine receptor D5 ISO RGD PMID:17142305 RGD:1600982 NCBI chr 4:9,781,634...9,784,009
Ensembl chr 4:9,781,634...9,784,009
JBrowse link
G FOXB1 forkhead box B1 ISS UniProtKB GO_REF:0000024 NCBI chr15:60,004,311...60,007,444
Ensembl chr15:60,004,234...60,061,730
JBrowse link
G GRIN1 glutamate ionotropic receptor NMDA type subunit 1 ISS UniProtKB GO_REF:0000024 NCBI chr 9:137,139,092...137,168,759
Ensembl chr 9:137,139,154...137,168,756
JBrowse link
G GRIN2A glutamate ionotropic receptor NMDA type subunit 2A IEA Ensembl GO_REF:0000107 NCBI chr16:9,753,404...10,182,928
Ensembl chr16:9,753,404...10,182,928
Ensembl chr16:9,753,404...10,182,928
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha IEA Ensembl GO_REF:0000107 NCBI chr14:61,695,513...61,748,259
Ensembl chr14:61,695,513...61,748,259
JBrowse link
G HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase IEA Ensembl GO_REF:0000107 NCBI chr 5:75,336,334...75,362,116
Ensembl chr 5:75,336,329...75,362,101
JBrowse link
G HRH1 histamine receptor H1 IEA Ensembl GO_REF:0000107 NCBI chr 3:11,137,238...11,263,557
Ensembl chr 3:11,137,093...11,263,557
JBrowse link
G HRH2 histamine receptor H2 IEA Ensembl GO_REF:0000107 NCBI chr 5:175,657,762...175,710,756
Ensembl chr 5:175,658,030...175,710,756
JBrowse link
G HTT huntingtin ISO (MGI:73644|PMID:7774020) MGI PMID:7774020 MGI:73644 NCBI chr 4:3,074,681...3,243,960
Ensembl chr 4:3,041,422...3,243,960
JBrowse link
G IDUA alpha-L-iduronidase ISO (MGI:3771256|PMID:18022143) MGI PMID:18022143 MGI:3771256 NCBI chr 4:986,997...1,004,564
Ensembl chr 4:986,997...1,004,564
JBrowse link
G IFT20 intraflagellar transport 20 IEA Ensembl GO_REF:0000107 NCBI chr17:28,328,326...28,335,472
Ensembl chr17:28,328,325...28,335,489
JBrowse link
G ITGB1 integrin subunit beta 1 IEA Ensembl GO_REF:0000107 NCBI chr10:32,900,318...32,958,230
Ensembl chr10:32,900,318...33,005,792
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase IEA Ensembl GO_REF:0000107 NCBI chr 4:54,657,957...54,740,715
Ensembl chr 4:54,657,918...54,740,715
JBrowse link
G KMT2A lysine methyltransferase 2A ISO (MGI:5638946|PMID:25834037) MGI PMID:25834037 MGI:5638946 NCBI chr11:118,436,492...118,526,832
Ensembl chr11:118,436,490...118,526,832
JBrowse link
G KRAS KRAS proto-oncogene, GTPase IEA Ensembl GO_REF:0000107 NCBI chr12:25,205,246...25,250,929
Ensembl chr12:25,205,246...25,250,936
JBrowse link
G LRRN4 leucine rich repeat neuronal 4 IEA Ensembl GO_REF:0000107 NCBI chr20:6,038,066...6,054,060
Ensembl chr20:6,040,546...6,054,060
JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO (MGI:3611151|PMID:16399702) MGI PMID:16399702 MGI:3611151 NCBI chr  X:154,021,573...154,097,717
Ensembl chr  X:154,021,573...154,137,103
JBrowse link
G MEIS2 Meis homeobox 2 IEA Ensembl GO_REF:0000107 NCBI chr15:36,889,204...37,101,311
Ensembl chr15:36,889,204...37,101,299
JBrowse link
G MTOR mechanistic target of rapamycin kinase IEA Ensembl GO_REF:0000107 NCBI chr 1:11,106,535...11,273,497
Ensembl chr 1:11,106,535...11,262,551
JBrowse link
G NDRG4 NDRG family member 4 IEA Ensembl GO_REF:0000107 NCBI chr16:58,463,704...58,515,403
Ensembl chr16:58,462,846...58,513,628
JBrowse link
G NETO1 neuropilin and tolloid like 1 ISS UniProtKB GO_REF:0000024 NCBI chr18:72,742,314...72,867,987
Ensembl chr18:72,742,314...72,868,146
JBrowse link
G NF1 neurofibromin 1 ISS HGNC GO_REF:0000024 NCBI chr17:31,094,927...31,377,677
Ensembl chr17:31,094,927...31,382,116
JBrowse link
G NLGN3 neuroligin 3 IEA Ensembl GO_REF:0000107 NCBI chr  X:71,144,389...71,175,307
Ensembl chr  X:71,144,831...71,171,201
JBrowse link
G NOG noggin ISO RGD PMID:12740172 RGD:10423996 NCBI chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
JBrowse link
G NPS neuropeptide S IEA Ensembl GO_REF:0000107 NCBI chr10:127,549,309...127,553,540
Ensembl chr10:127,549,369...127,552,639
Ensembl chr10:127,549,369...127,552,639
JBrowse link
G NPTN neuroplastin IEA Ensembl GO_REF:0000107 NCBI chr15:73,560,014...73,633,389
Ensembl chr15:73,560,014...73,634,134
JBrowse link
G NTS neurotensin ISO RGD PMID:20219557 RGD:9743918 NCBI chr12:85,874,295...85,882,992
Ensembl chr12:85,874,295...85,882,992
JBrowse link
G PDE1B phosphodiesterase 1B IEA Ensembl GO_REF:0000107 NCBI chr12:54,549,601...54,579,239
Ensembl chr12:54,549,601...54,579,239
JBrowse link
G PDE8B phosphodiesterase 8B ISO (MGI:5525232|PMID:22925203) MGI PMID:22925203 MGI:5525232 NCBI chr 5:77,180,304...77,428,256
Ensembl chr 5:77,086,732...77,427,124
Ensembl chr 5:77,086,732...77,427,124
Ensembl chr 5:77,086,732...77,427,124
JBrowse link
G PIAS1 protein inhibitor of activated STAT 1 IEA Ensembl GO_REF:0000107 NCBI chr15:68,054,315...68,193,847
Ensembl chr15:68,054,309...68,198,603
Ensembl chr15:68,054,309...68,198,603
JBrowse link
G PPP1R1B protein phosphatase 1 regulatory inhibitor subunit 1B IEA Ensembl GO_REF:0000107 NCBI chr17:39,626,735...39,636,625
Ensembl chr17:39,626,740...39,636,626
JBrowse link
G PTPRZ1 protein tyrosine phosphatase receptor type Z1 ISO RGD PMID:12737936 RGD:9590120 NCBI chr 7:121,873,161...122,062,036
Ensembl chr 7:121,873,089...122,062,036
JBrowse link
G RAG1 recombination activating 1 IEA Ensembl GO_REF:0000107 NCBI chr11:36,510,353...36,579,762
Ensembl chr11:36,510,709...36,593,156
JBrowse link
G RGS14 regulator of G protein signaling 14 ISS UniProtKB GO_REF:0000024 NCBI chr 5:177,357,672...177,372,601
Ensembl chr 5:177,357,924...177,372,596
JBrowse link
G RIC8A RIC8 guanine nucleotide exchange factor A IEA Ensembl GO_REF:0000107 NCBI chr11:207,511...215,175
Ensembl chr11:207,511...215,113
JBrowse link
G SCT secretin ISO (MGI:4939559|PMID:21159798) MGI PMID:21159798 MGI:4939559 NCBI chr11:626,095...627,692
Ensembl chr11:626,309...627,181
JBrowse link
G SGK1 serum/glucocorticoid regulated kinase 1 ISO both spacial learning and enrichment-induced spatial learning facilitation RGD PMID:14656333 RGD:1642778 NCBI chr 6:134,169,246...134,318,112
Ensembl chr 6:134,169,246...134,318,112
JBrowse link
G SLC7A11 solute carrier family 7 member 11 IEA Ensembl GO_REF:0000107 NCBI chr 4:138,164,097...138,242,349
Ensembl chr 4:138,164,097...138,242,349
JBrowse link
G SYNGAP1 synaptic Ras GTPase activating protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:33,420,065...33,453,689
Ensembl chr 6:33,419,661...33,453,689
JBrowse link
G SYNPO synaptopodin IEA Ensembl GO_REF:0000107 NCBI chr 5:150,586,026...150,659,214
Ensembl chr 5:150,601,080...150,659,207
JBrowse link
G TAFA2 TAFA chemokine like family member 2 ISS UniProt GO_REF:0000024 NCBI chr12:61,708,248...62,260,104
Ensembl chr12:61,708,259...62,279,150
JBrowse link
G TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:158,968,600...159,232,659
Ensembl chr 2:158,968,640...159,232,659
JBrowse link
G TTC36 tetratricopeptide repeat domain 36 ISO (MGI:6362140|PMID:31537781) MGI PMID:31537781 MGI:6362140 NCBI chr11:118,527,474...118,530,993
Ensembl chr11:118,527,472...118,531,197
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18672
    response to stimulus 10151
      response to abiotic stimulus 1704
        response to radiation 592
          response to light stimulus 401
            cellular response to light stimulus + 153
            cone photoresponse recovery 0
            de-etiolation 0
            detection of light stimulus + 91
            energy quenching + 0
            photoperiodism + 40
            photoprotection 0
            phototaxis + 0
            response to UV + 164
            response to blue light + 7
            response to light intensity + 18
            response to red or far red light + 1
            visual behavior + 78
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.