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ONTOLOGY REPORT - ANNOTATIONS


Term:response to light stimulus
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Accession:GO:0009416 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.


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response to light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase ISO RGD PMID:18001324 RGD:2301033 NCBI chrNW_004936594:1,556,303...1,559,198 JBrowse link
G Asns asparagine synthetase (glutamine-hydrolyzing) ISO transpupillary thermotherapy laser RGD PMID:16885923 RGD:2302304 NCBI chrNW_004936585:2,834,202...2,854,740 JBrowse link
G Bdnf brain derived neurotrophic factor ISO RGD PMID:17640634 RGD:8655603 NCBI chrNW_004936540:5,530,081...5,582,765 JBrowse link
G Bhlhe40 basic helix-loop-helix family member e40 ISO PMID:12397359
(PMID:15038852)
UniProt
BHF-UCL
PMID:12397359, PMID:15038852 RGD:625726 NCBI chrNW_004936577:4,316,099...4,321,193 JBrowse link
G Clock clock circadian regulator ISO RGD PMID:10471199 RGD:10401879 NCBI chrNW_004936482:17,789,834...17,900,371 JBrowse link
G Clu clusterin ISO RGD PMID:11803476 RGD:9062370 NCBI chrNW_004936675:499,745...513,515 JBrowse link
G Cry1 cryptochrome circadian regulator 1 ISO (MGI:6294193|PMID:29561690) UniProt PMID:29561690 MGI:6294193 NCBI chrNW_004936492:7,929,138...7,994,797 JBrowse link
G Cry2 cryptochrome circadian regulator 2 ISO (PMID:15751956)
(MGI:6294193|PMID:29561690)
CAFA
UniProt
PMID:15751956, PMID:29561690 MGI:6294193 NCBI chrNW_004936562:3,133,849...3,168,472 JBrowse link
G Dnm2 dynamin 2 ISO RGD PMID:22666495 RGD:9685159 NCBI chrNW_004936659:957,408...1,046,393 JBrowse link
G Drd2 dopamine receptor D2 ISO (MGI:3639799|PMID:16715079) MGI PMID:16715079 MGI:3639799 NCBI chrNW_004936612:1,094,686...1,154,149 JBrowse link
G Dusp1 dual specificity phosphatase 1 ISO RGD PMID:15527789 RGD:2298681 NCBI chrNW_004936609:2,688,170...2,691,057 JBrowse link
G Dynlrb1 dynein light chain roadblock-type 1 ISO RGD PMID:10816553 RGD:633064 NCBI chrNW_004936561:6,118,849...6,135,001 JBrowse link
G Elk1 ETS transcription factor ELK1 ISO RGD PMID:10383826 RGD:7488912 NCBI chrNW_004936502:13,402,726...13,418,214 JBrowse link
G Fech ferrochelatase ISO (MGI:50545|PMID:1939658) MGI PMID:1939658 MGI:50545 NCBI chrNW_004936497:6,755,626...6,788,568 JBrowse link
G Fmr1 FMRP translational regulator 1 ISO RGD PMID:15564573 RGD:1601175 NCBI chrNW_004936513:1,290,038...1,327,850 JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:11146118 RGD:2293791 NCBI chrNW_004936488:4,384,710...4,388,118 JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit ISO RGD PMID:11146118 RGD:2293791 NCBI chrNW_004936493:4,308,683...4,327,102 JBrowse link
G Gja10 gap junction protein alpha 10 ISO (MGI:3654563|PMID:16820008) MGI PMID:16820008 MGI:3654563 NCBI chrNW_004936510:2,380,114...2,395,781 JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A ISO RGD PMID:19850826 RGD:2325946 NCBI chrNW_004936530:8,286,101...8,612,183 JBrowse link
G Grk1 G protein-coupled receptor kinase 1 ISO (MGI:1334014|PMID:10097103) RGD
MGI
PMID:3950623, PMID:10097103 MGI:1334014, RGD:1600007 NCBI chrNW_004936472:152,202...165,134 JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:11146118 RGD:2293791 NCBI chrNW_004936659:1,890,786...1,892,619 JBrowse link
G Kmt2a lysine methyltransferase 2A ISO (MGI:5638946|PMID:25834037) MGI PMID:25834037 MGI:5638946 NCBI chrNW_004936542:3,480,071...3,566,823 JBrowse link
G LOC101969021 somatotropin ISO RGD PMID:19091612 RGD:2315626 NCBI chrNW_004936541:4,524,397...4,528,234 JBrowse link
G Mapk10 mitogen-activated protein kinase 10 ISO (MGI:5431019|PMID:22441692) UniProt PMID:22441692 MGI:5431019 NCBI chrNW_004936896:228,908...539,836 JBrowse link
G Mat2a methionine adenosyltransferase 2A ISO RGD PMID:15504733 RGD:1598692 NCBI chrNW_004936712:1,710,513...1,717,339 JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 ISO RGD PMID:17640634 RGD:8655603 NCBI chrNW_004936680:267,850...621,467 JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase ISO RGD PMID:15979612 RGD:8694099 NCBI chrNW_004936602:3,411,106...3,418,826 JBrowse link
G Opn4 opsin 4 NOT ISO (MGI:5925970|PMID:26320947) MGI PMID:26320947 MGI:5925970 NCBI chrNW_004936804:261,210...272,449 JBrowse link
G Per1 period circadian regulator 1 ISO (PMID:15038852) BHF-UCL PMID:15038852 NCBI chrNW_004936595:1,366,883...1,382,138 JBrowse link
G Polg DNA polymerase gamma, catalytic subunit ISO RGD PMID:15979612 RGD:8694099 NCBI chrNW_004936483:15,178,947...15,196,277 JBrowse link
G Pparg peroxisome proliferator activated receptor gamma ISO (MGI:3830801|PMID:19041764) UniProt PMID:19041764 MGI:3830801 NCBI chrNW_004936602:1,230,907...1,368,588 JBrowse link
G Rho rhodopsin ISO (MGI:3655007|PMID:16723493) MGI PMID:16723493 MGI:3655007 NCBI chrNW_004936602:896,730...901,480 JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A ISO (MGI:3692154|PMID:16221497) MGI PMID:16221497 MGI:3692154 NCBI chrNW_004936888:57,212...62,722 JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO RGD PMID:17389522 RGD:9585654 NCBI chrNW_004936591:3,347,346...3,368,062 JBrowse link
G Slc1a2 solute carrier family 1 member 2 ISO (MGI:1203466|PMID:9539795) MGI PMID:9539795 MGI:1203466 NCBI chrNW_004936533:2,779,650...2,918,640 JBrowse link
G Slc1a3 solute carrier family 1 member 3 ISO (MGI:1203466|PMID:9539795) MGI PMID:9539795 MGI:1203466 NCBI chrNW_004936518:5,216,343...5,291,107 JBrowse link
G Slc4a10 solute carrier family 4 member 10 ISO (MGI:3772751|PMID:18165320) MGI PMID:18165320 MGI:3772751 NCBI chrNW_004936469:17,068,179...17,349,563 JBrowse link
G Syne1 spectrin repeat containing nuclear envelope protein 1 ISO RGD PMID:8700883 RGD:632616 NCBI chrNW_004936489:4,903,176...5,177,987 JBrowse link
G Th tyrosine hydroxylase ISO RGD PMID:21185915 RGD:5128767 NCBI chrNW_004936794:478,651...486,887 JBrowse link
adaptation of rhodopsin mediated signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh11 retinol dehydrogenase 11 ISO (MGI:3584215|PMID:15790565) MGI PMID:15790565 MGI:3584215 NCBI chrNW_004936495:11,065,946...11,082,104 JBrowse link
G Rs1 retinoschisin 1 ISO (MGI:3055638|PMID:15326152) MGI PMID:15326152 MGI:3055638 NCBI chrNW_004936844:284,938...314,524 JBrowse link
cellular response to high light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt2 AKT serine/threonine kinase 2 ISO (MGI:3695811|PMID:17202487) MGI PMID:17202487 MGI:3695811 NCBI chrNW_004936661:2,652,568...2,694,039 JBrowse link
cellular response to light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:3696487|PMID:17234588) MGI PMID:17234588 MGI:3696487 NCBI chrNW_004936567:6,347,661...6,559,731 JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO RGD PMID:17475674 RGD:9068879 NCBI chrNW_004936495:5,770,988...5,816,157 JBrowse link
G Kcne1 potassium voltage-gated channel subfamily E regulatory subunit 1 ISO RGD PMID:24202060 RGD:12910722 NCBI chrNW_004936500:7,998,464...8,007,848 JBrowse link
G Opn5 opsin 5 ISO (MGI:6376341|PMID:31607531) UniProt PMID:31607531 MGI:6376341 NCBI chrNW_004936476:12,740,038...12,766,310 JBrowse link
G Rho rhodopsin ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936602:896,730...901,480 JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936496:1,396,838...1,411,082 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO (MGI:1354839|PMID:10725384) MGI PMID:10725384 MGI:1354839 NCBI chrNW_004936502:5,163,164...5,212,940 JBrowse link
G Trpm1 transient receptor potential cation channel subfamily M member 1 ISO (PMID:19896109)
(MGI:4398796|PMID:19861548), (MGI:4849309|PMID:21052544)
(MGI:4420740|PMID:19966281)
UniProtKB
UniProt
MGI
PMID:19861548, PMID:19896109, PMID:19966281, PMID:21052544 MGI:4398796, MGI:4420740, MGI:4849309 NCBI chrNW_004936483:723,784...856,839 JBrowse link
cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 (Colton blood group) ISO (PMID:19424603) UniProtKB PMID:19424603 NCBI chrNW_004936478:7,146,997...7,160,369 JBrowse link
G Atr ATR serine/threonine kinase ISO (PMID:9925639) BHF-UCL PMID:9925639 NCBI chrNW_004936540:4,074,543...4,178,859 JBrowse link
G Aurkb aurora kinase B ISO (PMID:20959462) UniProtKB PMID:20959462 NCBI chrNW_004936595:1,435,601...1,437,423 JBrowse link
G Bak1 BCL2 antagonist/killer 1 ISO (PMID:15901672)
(MGI:3689797|PMID:15901672)
UniProtKB
UniProt
PMID:15901672 MGI:3689797 NCBI chrNW_004936476:25,347,608...25,354,772 JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO (MGI:3042308|PMID:14963330) MGI PMID:14963330 MGI:3042308 NCBI chrNW_004936664:2,968,103...2,973,652 JBrowse link
G Bmf Bcl2 modifying factor ISO (PMID:23629966)
(MGI:5490676|PMID:23629966)
CAFA PMID:23629966 MGI:5490676 NCBI chrNW_004936471:3,573,437...3,594,438 JBrowse link
G Casp9 caspase 9 ISO (PMID:15657060) UniProtKB PMID:15657060 NCBI chrNW_004936474:3,178,097...3,196,130 JBrowse link
G Cdc25a cell division cycle 25A ISO (PMID:19966869) UniProtKB PMID:19966869 NCBI chrNW_004936596:1,657,411...1,680,109 JBrowse link
G Cops9 COP9 signalosome subunit 9 ISO (PMID:26456823) UniProtKB PMID:26456823 NCBI chrNW_004936745:1,291,702...1,295,834 JBrowse link
G Crebbp CREB binding protein ISO (PMID:24939902) UniProtKB PMID:24939902 NCBI chrNW_004936694:552,447...663,237 JBrowse link
G Ddias DNA damage induced apoptosis suppressor ISO (MGI:3718924|PMID:17515607) MGI PMID:17515607 MGI:3718924 NCBI chrNW_004936498:11,115,055...11,127,215 JBrowse link
G Dhx36 DEAH-box helicase 36 ISO (PMID:27940037) UniProt PMID:27940037 NCBI chrNW_004936519:1,946,684...1,987,036 JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 ISO (MGI:5700311|PMID:12176355) UniProt PMID:12176355 MGI:5700311 NCBI chrNW_004936471:3,423,792...3,527,089 JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha ISO (MGI:5700311|PMID:12176355) UniProt PMID:12176355 MGI:5700311 NCBI chrNW_004936495:10,746,687...10,769,304 JBrowse link
G Ep300 E1A binding protein p300 ISO (PMID:24939902) UniProtKB PMID:24939902 NCBI chrNW_004936492:696,982...778,132 JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:17055345) BHF-UCL PMID:17055345 NCBI chrNW_004936501:2,301,072...2,329,346 JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 ISO (PMID:17873522) UniProtKB PMID:17873522 NCBI chrNW_004936689:2,261,163...2,449,951 JBrowse link
G Fmr1 FMRP translational regulator 1 ISO (MGI:5602914|PMID:24813610) UniProt PMID:24813610 MGI:5602914 NCBI chrNW_004936513:1,290,038...1,327,850 JBrowse link
G Ino80 INO80 complex ATPase subunit ISO (PMID:18026119) UniProtKB PMID:18026119 NCBI chrNW_004936471:4,374,802...4,478,894 JBrowse link
G Kdm1a lysine demethylase 1A ISO (PMID:24217620) MGI PMID:24217620 NCBI chrNW_004936474:8,262,913...8,319,089 JBrowse link
G Mapk13 mitogen-activated protein kinase 13 ISO (PMID:9218798) UniProtKB PMID:9218798 NCBI chrNW_004936476:23,212,116...23,218,726 JBrowse link
G Mapk9 mitogen-activated protein kinase 9 ISO RGD PMID:8875991 RGD:2304246 NCBI chrNW_004936739:551,678...602,027 JBrowse link
G Mettl3 methyltransferase like 3 ISO (PMID:28297716) UniProtKB PMID:28297716 NCBI chrNW_004936880:646,835...661,312 JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO (PMID:17873522) UniProtKB PMID:17873522 NCBI chrNW_004936470:20,480,844...20,485,955 JBrowse link
G N4bp1 NEDD4 binding protein 1 ISO (PMID:17592138)
(MGI:3829128|PMID:17592138)
BHF-UCL PMID:17592138 MGI:3829128 NCBI chrNW_004936475:1,743,205...1,765,466 JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase ISO (PMID:17996703) BHF-UCL PMID:17996703 NCBI chrNW_004936471:17,254,777...17,374,725 JBrowse link
G Nfatc4 nuclear factor of activated T cells 4 ISO (MGI:3709926|PMID:17242187) MGI PMID:17242187 MGI:3709926 NCBI chrNW_004936722:178,866...187,847 JBrowse link
G Noc2l NOC2 like nucleolar associated transcriptional repressor ISO (PMID:20959462) UniProtKB PMID:20959462 NCBI chrNW_004936737:2,087,123...2,098,153 JBrowse link
G Npm1 nucleophosmin 1 ISO (PMID:19160485) CAFA PMID:19160485 NCBI chrNW_004936609:3,712,628...3,725,635 JBrowse link
G Nsmce3 NSE3 homolog, SMC5-SMC6 complex component ISO (PMID:27427983) UniProtKB PMID:27427983 NCBI chrNW_004936483:1,433,119...1,434,506 JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 ISO (PMID:24289924) BHF-UCL PMID:24289924 NCBI chrNW_004936526:3,102,468...3,147,601 JBrowse link
G Pbk PDZ binding kinase ISO (MGI:5293269|PMID:21715333) MGI PMID:21715333 MGI:5293269 NCBI chrNW_004936675:704,001...722,769 JBrowse link
G Pcna proliferating cell nuclear antigen ISO (PMID:24939902) RGD
UniProtKB
PMID:8905661, PMID:24939902 RGD:10448977 NCBI chrNW_004936485:13,766,221...13,771,215 JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO (MGI:3709926|PMID:17242187) MGI PMID:17242187 MGI:3709926 NCBI chrNW_004936480:1,188,408...1,273,210 JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO (PMID:24939902) UniProtKB PMID:24939902 NCBI chrNW_004936889:231,373...250,985 JBrowse link
G Polk DNA polymerase kappa ISO (PMID:28297716) UniProtKB PMID:28297716 NCBI chrNW_004936549:1,199,810...1,261,889 JBrowse link
G Ppp1r15a protein phosphatase 1 regulatory subunit 15A ISO RGD PMID:9811446 RGD:9999409 NCBI chrNW_004936664:2,910,609...2,914,205 JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 ISO RGD PMID:22306367 RGD:5688265 NCBI chrNW_004936481:3,821,564...3,828,086 JBrowse link
G Ptn pleiotrophin ISO RGD PMID:17925408 RGD:10044023 NCBI chrNW_004936592:1,706,979...1,806,345 JBrowse link
G Ptprk protein tyrosine phosphatase receptor type K ISO (PMID:16849327) UniProtKB PMID:16849327 NCBI chrNW_004936639:1,279,795...1,683,944 JBrowse link
G Rhbdd1 rhomboid domain containing 1 ISO (MGI:5430884|PMID:19358743) UniProt PMID:19358743 MGI:5430884 NCBI chrNW_004936525:8,906,848...9,028,792 JBrowse link
G Rhno1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 ISO (PMID:21659603) UniProtKB PMID:21659603 NCBI chrNW_004936606:3,201,540...3,208,019 JBrowse link
G Rnf168 ring finger protein 168 ISO (MGI:5562615|PMID:24217620) MGI PMID:24217620 MGI:5562615 NCBI chrNW_004936784:1,073,236...1,094,575 JBrowse link
G Rpl26 ribosomal protein L26 ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004936595:1,603,913...1,609,125 JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 ISO (PMID:18026119) UniProtKB PMID:18026119 NCBI chrNW_004936664:2,995,212...3,010,563 JBrowse link
G Sde2 SDE2 telomere maintenance homolog ISO (PMID:27906959) UniProt PMID:27906959 NCBI chrNW_004936526:2,763,243...2,779,506 JBrowse link
G Taf1 TATA-box binding protein associated factor 1 ISO (PMID:24289924) ParkinsonsUK-UCL PMID:24289924 NCBI chrNW_004936762:189,710...271,759 JBrowse link
G Tmem161a transmembrane protein 161A ISO (PMID:16551573) BHF-UCL PMID:16551573 NCBI chrNW_004936596:2,274,989...2,287,288 JBrowse link
G Tp53 tumor protein p53 ISO (PMID:16213212), (PMID:23629966)
(MGI:5490676|PMID:23629966)
(MGI:3042308|PMID:14963330)
CAFA
MGI
PMID:14963330, PMID:16213212, PMID:23629966 MGI:3042308, MGI:5490676 NCBI chrNW_004936595:919,807...935,367 JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 ISO (MGI:2153600|PMID:11557757) MGI PMID:11557757 MGI:2153600 NCBI chrNW_004936544:7,882,710...7,891,668 JBrowse link
G Trex1 three prime repair exonuclease 1 ISO (MGI:5014018|PMID:20511593) MGI PMID:20511593 MGI:5014018 NCBI chrNW_004936529:264,535...266,451 JBrowse link
G Triap1 TP53 regulated inhibitor of apoptosis 1 ISO (PMID:15735003) BHF-UCL PMID:15735003 NCBI chrNW_004936668:500,815...503,158 JBrowse link
G Usp28 ubiquitin specific peptidase 28 ISO (PMID:17873522) UniProtKB PMID:17873522 NCBI chrNW_004936612:742,777...804,919 JBrowse link
G Usp47 ubiquitin specific peptidase 47 ISO (MGI:4839431|PMID:19966869) UniProt PMID:19966869 MGI:4839431 NCBI chrNW_004936528:6,483,898...6,596,136 JBrowse link
G Yy1 YY1 transcription factor ISO (PMID:18026119) UniProtKB PMID:18026119 NCBI chrNW_004936604:3,911,407...3,945,405 JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 ISO (PMID:24657165) UniProtKB PMID:24657165 NCBI chrNW_004936495:8,212,136...8,238,876 JBrowse link
cellular response to UV-A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cers1 ceramide synthase 1 ISO (PMID:19800881) UniProtKB PMID:19800881 NCBI chrNW_004936596:2,442,978...2,467,184 JBrowse link
G Mme membrane metalloendopeptidase ISO (PMID:20876573) UniProtKB PMID:20876573 NCBI chrNW_004936519:2,513,896...2,595,896 JBrowse link
G Mmp1 matrix metallopeptidase 1 ISO (PMID:31380578) UniProt PMID:31380578 NCBI chrNW_004936551:5,167,909...5,175,149 JBrowse link
G Mmp2 matrix metallopeptidase 2 ISO (PMID:31380578) UniProt PMID:31380578 NCBI chrNW_004936475:7,801,356...7,825,831 JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO (PMID:31380578) UniProt PMID:31380578 NCBI chrNW_004936514:7,038,240...7,045,873 JBrowse link
G Opn1sw opsin 1, short wave sensitive ISO (PMID:31380578) UniProt PMID:31380578 NCBI chrNW_004936479:15,696,063...15,702,311 JBrowse link
G Opn3 opsin 3 ISO (PMID:31380578) UniProt PMID:31380578 NCBI chrNW_004936526:8,833,495...8,876,631 JBrowse link
G Opn5 opsin 5 ISO (PMID:31380578) UniProt PMID:31380578 NCBI chrNW_004936476:12,740,038...12,766,310 JBrowse link
G Ppid peptidylprolyl isomerase D ISO (PMID:23220213) UniProtKB PMID:23220213 NCBI chrNW_004936576:5,165,815...5,179,928 JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 ISO (PMID:31380578) UniProt PMID:31380578 NCBI chrNW_004936502:13,345,936...13,350,170 JBrowse link
cellular response to UV-B term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin dependent kinase inhibitor 1A ISO (MGI:5613877|PMID:25329316) UniProt PMID:25329316 MGI:5613877 NCBI chrNW_004936476:22,717,308...22,725,127 JBrowse link
G Crip1 cysteine rich protein 1 ISO (PMID:20415737) UniProtKB PMID:20415737 NCBI chrNW_004936621:101,046...102,660 JBrowse link
G Hyal1 hyaluronidase 1 ISO (PMID:21699545) UniProtKB PMID:21699545 NCBI chrNW_004936529:1,838,212...1,842,399 JBrowse link
G Hyal2 hyaluronidase 2 ISO (PMID:21699545) UniProtKB PMID:21699545 NCBI chrNW_004936529:1,845,445...1,851,106 JBrowse link
G Hyal3 hyaluronidase 3 ISO (PMID:21699545) UniProtKB PMID:21699545 NCBI chrNW_004936529:1,831,639...1,837,314 JBrowse link
G Mfap4 microfibril associated protein 4 ISO (PMID:22355679) BHF-UCL PMID:22355679 NCBI chrNW_004936881:369,161...372,628 JBrowse link
G Mme membrane metalloendopeptidase ISO (PMID:20876573) UniProtKB PMID:20876573 NCBI chrNW_004936519:2,513,896...2,595,896 JBrowse link
G Rpl13a ribosomal protein L13a ISO RGD PMID:10483362 RGD:11036101 NCBI chrNW_004936664:3,352,535...3,356,196 JBrowse link
G Rpl35 ribosomal protein L35 ISO RGD PMID:10483362 RGD:11036101 NCBI chrNW_004936487:13,056,243...13,060,900 JBrowse link
G Stk11 serine/threonine kinase 11 ISO (PMID:25329316)
(MGI:5613877|PMID:25329316)
UniProtKB
UniProt
PMID:25329316 MGI:5613877 NCBI chrNW_004936588:579,816...601,033 JBrowse link
cellular response to UV-C term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUNH9orf116 chromosome unknown C9orf116 homolog ISO (MGI:4868626|PMID:21159655) MGI PMID:21159655 MGI:4868626 NCBI chrNW_004936669:2,067,544...2,072,052 JBrowse link
G Ei24 EI24 autophagy associated transmembrane protein ISO (MGI:5543725|PMID:24014029) MGI PMID:24014029 MGI:5543725 NCBI chrNW_004936743:1,957,948...1,970,885 JBrowse link
G Impact impact RWD domain protein ISO (MGI:5576818|PMID:24333428) UniProt PMID:24333428 MGI:5576818 NCBI chrNW_004936550:3,765,952...3,795,183 JBrowse link
G Mdm2 MDM2 proto-oncogene ISO RGD PMID:14558917 RGD:2317408 NCBI chrNW_004936545:6,709,903...6,732,334 JBrowse link
G Polh DNA polymerase eta ISO (MGI:3695544|PMID:17114294) MGI PMID:17114294 MGI:3695544 NCBI chrNW_004936476:16,400,026...16,434,538 JBrowse link
G Poli DNA polymerase iota ISO (MGI:3695544|PMID:17114294) MGI PMID:17114294 MGI:3695544 NCBI chrNW_004936497:9,490,048...9,512,475 JBrowse link
G Tp53 tumor protein p53 ISO (MGI:5543725|PMID:24014029) MGI PMID:24014029 MGI:5543725 NCBI chrNW_004936595:919,807...935,367 JBrowse link
dark adaptation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent2 terminal nucleotidyltransferase 2 ISO RGD PMID:23700402 RGD:11041783 NCBI chrNW_004936549:7,401,532...7,465,264 JBrowse link
detection of light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde6b phosphodiesterase 6B ISO (MGI:2155023|PMID:11747369) MGI PMID:11747369 MGI:2155023 NCBI chrNW_004936477:22,418,037...22,472,251 JBrowse link
G Rho rhodopsin ISO (MGI:2155023|PMID:11747369) MGI PMID:11747369 MGI:2155023 NCBI chrNW_004936602:896,730...901,480 JBrowse link
detection of light stimulus involved in visual perception term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Best1 bestrophin 1 ISO (MGI:3795256|PMID:16636205) MGI PMID:16636205 MGI:3795256 NCBI chrNW_004936581:1,120,681...1,132,226 JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F ISO (PMID:7571473) UniProtKB PMID:7571473 NCBI chrNW_004936721:1,078,570...1,106,153 JBrowse link
G Cacna2d4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 ISO (PMID:17033974) UniProtKB PMID:17033974 NCBI chrNW_004936606:2,011,454...2,118,255 JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 ISO (MGI:3795256|PMID:16636205) MGI PMID:16636205 MGI:3795256 NCBI chrNW_004936469:25,494,820...25,745,783 JBrowse link
G Ccdc66 coiled-coil domain containing 66 ISO (MGI:5141557|PMID:21680557) CACAO PMID:21680557 MGI:5141557 NCBI chrNW_004936473:7,027,543...7,054,079 JBrowse link
G Cep250 centrosomal protein 250 ISO (MGI:6317055|PMID:30998843) UniProt PMID:30998843 MGI:6317055 NCBI chrNW_004936561:5,283,258...5,331,688 JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO (PMID:15557452) UniProtKB PMID:15557452 NCBI chrNW_004936475:9,844,438...9,908,009 JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:5315300|PMID:22447858) MGI PMID:22447858 MGI:5315300 NCBI chrNW_004936567:6,347,661...6,559,731 JBrowse link
G Eys eyes shut homolog ISO (PMID:18836446), (PMID:18976725), (PMID:20696082), (PMID:22363543) CACAO PMID:18836446, PMID:18976725, PMID:20696082, PMID:22363543 NCBI chrNW_004936476:158,391...1,289,639 JBrowse link
G Gja10 gap junction protein alpha 10 ISO (MGI:3654563|PMID:16820008) MGI PMID:16820008 MGI:3654563 NCBI chrNW_004936510:2,380,114...2,395,781 JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (PMID:17584859)
(MGI:3772743|PMID:18171936)
UniProtKB
MGI
PMID:17584859, PMID:18171936 MGI:3772743 NCBI chrNW_004936529:1,735,258...1,740,297 JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO (PMID:12077706)
(MGI:3714271|PMID:17065522)
UniProtKB
MGI
PMID:12077706, PMID:17065522 MGI:3714271 NCBI chrNW_004936704:1,079,255...1,093,732 JBrowse link
G Grm6 glutamate metabotropic receptor 6 ISO (PMID:17405131) UniProtKB PMID:17405131 NCBI chrNW_004936739:1,726,382...1,742,937 JBrowse link
G Gucy2f guanylate cyclase 2F, retinal ISO (MGI:3708225|PMID:17255100) CACAO PMID:17255100 MGI:3708225 NCBI chrNW_004936499:5,653,384...5,752,732 JBrowse link
G Prph2 peripherin 2 ISO (MGI:5905515|PMID:28053051)
(MGI:6305433|PMID:26420485)
(MGI:5905515|PMID:28053051), (MGI:6305433|PMID:26420485)
MGI PMID:26420485, PMID:28053051 MGI:5905515, MGI:6305433 NCBI chrNW_004936476:17,159,756...17,174,226 JBrowse link
G Rbp4 retinol binding protein 4 ISO (MGI:3687059|PMID:12484775) MGI PMID:12484775 MGI:3687059 NCBI chrNW_004936601:1,401,215...1,410,195 JBrowse link
G Reep6 receptor accessory protein 6 ISO (PMID:27889058) UniProtKB PMID:27889058 NCBI chrNW_004936588:800,492...804,769 JBrowse link
G Rgs9bp regulator of G protein signaling 9 binding protein ISO (MGI:3027216|PMID:14625292) MGI PMID:14625292 MGI:3027216 NCBI chrNW_004936570:3,042,233...3,043,884 JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:5905515|PMID:28053051) MGI PMID:28053051 MGI:5905515 NCBI chrNW_004936581:642,322...644,286 JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO (PMID:15557452) UniProtKB PMID:15557452 NCBI chrNW_004936591:3,347,346...3,368,062 JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (PMID:21521437) CACAO PMID:21521437 NCBI chrNW_004936880:440,900...511,503 JBrowse link
G Sema5a semaphorin 5A ISO (MGI:5140622|PMID:21835343) MGI PMID:21835343 MGI:5140622 NCBI chrNW_004936643:1,352,401...1,803,553 JBrowse link
G Sema5b semaphorin 5B ISO (MGI:5140622|PMID:21835343) MGI PMID:21835343 MGI:5140622 NCBI chrNW_004936725:2,229,772...2,270,458 JBrowse link
G Tulp1 TUB like protein 1 ISO (PMID:15557452) UniProtKB PMID:15557452 NCBI chrNW_004936476:23,744,707...23,757,002 JBrowse link
detection of UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fech ferrochelatase ISO (MGI:2384247|PMID:12149233) MGI PMID:12149233 MGI:2384247 NCBI chrNW_004936497:6,755,626...6,788,568 JBrowse link
detection of visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx6 iroquois homeobox 6 ISO (MGI:5447580|PMID:23172916) MGI PMID:23172916 MGI:5447580 NCBI chrNW_004936475:7,665,100...7,672,132 JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT ISO (PMID:1730053) UniProtKB PMID:1730053 NCBI chrNW_004936836:1,151...287,438 JBrowse link
G Trex1 three prime repair exonuclease 1 ISO (MGI:5562498|PMID:23993650) MGI PMID:23993650 MGI:5562498 NCBI chrNW_004936529:264,535...266,451 JBrowse link
entrainment of circadian clock by photoperiod term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh7 atonal bHLH transcription factor 7 ISO (MGI:5699646|PMID:26392540) UniProt PMID:26392540 MGI:5699646 NCBI chrNW_004936521:10,038,345...10,039,345 JBrowse link
G Bhlhe40 basic helix-loop-helix family member e40 ISO (MGI:3798698|PMID:18411297) BHF-UCL PMID:18411297 MGI:3798698 NCBI chrNW_004936577:4,316,099...4,321,193 JBrowse link
G Crtc1 CREB regulated transcription coactivator 1 ISO (MGI:5532783|PMID:23993098) UniProt PMID:23993098 MGI:5532783 NCBI chrNW_004936596:2,551,621...2,625,327 JBrowse link
G Cry1 cryptochrome circadian regulator 1 ISO (MGI:5490394|PMID:23616524) UniProt PMID:23616524 MGI:5490394 NCBI chrNW_004936492:7,929,138...7,994,797 JBrowse link
G Cry2 cryptochrome circadian regulator 2 ISO (MGI:5490394|PMID:23616524) UniProt PMID:23616524 MGI:5490394 NCBI chrNW_004936562:3,133,849...3,168,472 JBrowse link
G Fbxl21 F-box and leucine rich repeat protein 21 ISO (MGI:5470183|PMID:23452855), (MGI:5487698|PMID:23452856) UniProt PMID:23452855, PMID:23452856 MGI:5470183, MGI:5487698 NCBI chrNW_004936597:3,037,282...3,045,145 JBrowse link
G Fbxl3 F-box and leucine rich repeat protein 3 ISO (MGI:5470183|PMID:23452855), (MGI:5487698|PMID:23452856), (MGI:5490394|PMID:23616524) UniProt PMID:23452855, PMID:23452856, PMID:23616524 MGI:5470183, MGI:5487698, MGI:5490394 NCBI chrNW_004936511:4,259,066...4,280,501 JBrowse link
G Id2 inhibitor of DNA binding 2 ISO (MGI:3838062|PMID:19217292) UniProt PMID:19217292 MGI:3838062 NCBI chrNW_004936532:5,236,175...5,238,689 JBrowse link
G Mta1 metastasis associated 1 ISO (MGI:5582861|PMID:24089055) UniProt PMID:24089055 MGI:5582861 NCBI chrNW_004936621:117,785...140,917 JBrowse link
G Nr2f6 nuclear receptor subfamily 2 group F member 6 ISO (MGI:3530176|PMID:15741322) MGI PMID:15741322 MGI:3530176 NCBI chrNW_004936596:3,596,720...3,606,283 JBrowse link
G Opn4 opsin 4 ISO (MGI:5925970|PMID:26320947) MGI PMID:26320947 MGI:5925970 NCBI chrNW_004936804:261,210...272,449 JBrowse link
G Opn5 opsin 5 ISO (MGI:5699646|PMID:26392540), (MGI:6376341|PMID:31607531), (MGI:6378274|PMID:30240620) UniProt PMID:26392540, PMID:30240620, PMID:31607531 MGI:5699646, MGI:6376341, MGI:6378274 NCBI chrNW_004936476:12,740,038...12,766,310 JBrowse link
G Pde6b phosphodiesterase 6B ISO (MGI:6378274|PMID:30240620) UniProt PMID:30240620 MGI:6378274 NCBI chrNW_004936477:22,418,037...22,472,251 JBrowse link
G Per1 period circadian regulator 1 ISO (MGI:3578039|PMID:15888647) UniProt PMID:15888647 MGI:3578039 NCBI chrNW_004936595:1,366,883...1,382,138 JBrowse link
G Pml PML nuclear body scaffold ISO (MGI:5314433|PMID:22274616) UniProt PMID:22274616 MGI:5314433 NCBI chrNW_004936471:33,135,186...33,173,218 JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha ISO (MGI:5086036|PMID:21712997) UniProt PMID:21712997 MGI:5086036 NCBI chrNW_004936599:2,345,982...2,348,494 JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta ISO (MGI:5086036|PMID:21712997) UniProt PMID:21712997 MGI:5086036 NCBI chrNW_004936493:3,981,364...4,002,083 JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma ISO (MGI:5086036|PMID:21712997) UniProt PMID:21712997 MGI:5086036 NCBI chrNW_004936558:3,631,794...3,651,754 JBrowse link
G Sik1 salt inducible kinase 1 ISO (MGI:5532783|PMID:23993098) UniProt PMID:23993098 MGI:5532783 NCBI chrNW_004936500:774,749...784,326 JBrowse link
G Tp53 tumor protein p53 ISO (MGI:5613453|PMID:24051492) UniProt PMID:24051492 MGI:5613453 NCBI chrNW_004936595:919,807...935,367 JBrowse link
G Usp2 ubiquitin specific peptidase 2 ISO (MGI:5607210|PMID:23213472) UniProt PMID:23213472 MGI:5607210 NCBI chrNW_004936542:4,284,243...4,310,545 JBrowse link
long-day photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agrp agouti related neuropeptide ISO RGD PMID:19490367 RGD:6480663 NCBI chrNW_004936475:17,927,991...17,929,377 JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nedd4 NEDD4 E3 ubiquitin protein ligase ISO (PMID:17996703) BHF-UCL PMID:17996703 NCBI chrNW_004936471:17,254,777...17,374,725 JBrowse link
optokinetic behavior term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chrNW_004936478:3,721,662...3,724,471 JBrowse link
G Opn4 opsin 4 ISO (MGI:5699646|PMID:26392540) UniProt PMID:26392540 MGI:5699646 NCBI chrNW_004936804:261,210...272,449 JBrowse link
photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase ISO RGD PMID:12358739 RGD:628397 NCBI chrNW_004936594:1,556,303...1,559,198 JBrowse link
G Drd4 dopamine receptor D4 ISO RGD PMID:18321474 RGD:2301031 NCBI chrNW_004936888:468,334...471,254 JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit ISO RGD PMID:16962714 RGD:2293767 NCBI chrNW_004936493:4,308,683...4,327,102 JBrowse link
G Nr1d1 nuclear receptor subfamily 1 group D member 1 ISO RGD PMID:21076970 RGD:10448986 NCBI chrNW_004936490:15,206,194...15,213,858 JBrowse link
phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arrb1 arrestin beta 1 ISO (MGI:3772638|PMID:11853756) MGI PMID:11853756 MGI:3772638 NCBI chrNW_004936498:4,089,621...4,172,749 JBrowse link
G Asic2 acid sensing ion channel subunit 2 ISO (MGI:3042539|PMID:14762118) MGI PMID:14762118 MGI:3042539 NCBI chrNW_004936538:938,266...2,011,154 JBrowse link
G Cabp4 calcium binding protein 4 ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chrNW_004936599:2,295,124...2,299,558 JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO (MGI:3527312|PMID:15634774) MGI PMID:15634774 MGI:3527312 NCBI chrNW_004936475:9,844,438...9,908,009 JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (MGI:1928441|PMID:11095744), (MGI:3609280|PMID:16249514), (MGI:3615719|PMID:15073279), (MGI:3757777|PMID:17881533), (MGI:3772638|PMID:11853756), (MGI:3778702|PMID:18367617) MGI PMID:11095744, PMID:11853756, PMID:15073279, PMID:16249514, PMID:17881533, PMID:18367617 MGI:1928441, MGI:3609280, MGI:3615719, MGI:3757777, MGI:3772638, MGI:3778702 NCBI chrNW_004936529:1,735,258...1,740,297 JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO (MGI:3761397|PMID:17408617), (MGI:3772743|PMID:18171936) MGI PMID:17408617, PMID:18171936 MGI:3761397, MGI:3772743 NCBI chrNW_004936704:1,079,255...1,093,732 JBrowse link
G Gngt1 G protein subunit gamma transducin 1 ISO (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chrNW_004936803:67,933...71,508 JBrowse link
G Guca1b guanylate cyclase activator 1B ISO (MGI:2664110|PMID:11493703), (MGI:3584028|PMID:15173221) MGI PMID:11493703, PMID:15173221 MGI:2664110, MGI:3584028 NCBI chrNW_004936476:17,679,505...17,688,970 JBrowse link
G Opn4 opsin 4 ISO (PMID:15674244)
(MGI:2667269|PMID:12808468)
UniProtKB
UniProt
RGD
PMID:11834834, PMID:12808468, PMID:15674244 MGI:2667269, RGD:633348 NCBI chrNW_004936804:261,210...272,449 JBrowse link
G Opn5 opsin 5 ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chrNW_004936476:12,740,038...12,766,310 JBrowse link
G Rcvrn recoverin ISO (MGI:3584028|PMID:15173221) MGI PMID:15173221 MGI:3584028 NCBI chrNW_004936595:2,873,739...2,882,150 JBrowse link
G Rho rhodopsin ISO (MGI:3655007|PMID:16723493) MGI PMID:16723493 MGI:3655007 NCBI chrNW_004936602:896,730...901,480 JBrowse link
phototransduction, UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Opn5 opsin 5 ISO (PMID:22043319)
(MGI:6230806|PMID:22043319)
UniProt PMID:22043319 MGI:6230806 NCBI chrNW_004936476:12,740,038...12,766,310 JBrowse link
phototransduction, visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor interacting protein like 1 ISO (MGI:3054118|PMID:15365173) MGI PMID:15365173 MGI:3054118 NCBI chrNW_004936677:1,539,502...1,548,343 JBrowse link
G Chrm1 cholinergic receptor muscarinic 1 ISO (PMID:12196552) AgBase PMID:12196552 NCBI chrNW_004936581:387,939...400,740 JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (PMID:17584859) UniProtKB PMID:17584859 NCBI chrNW_004936529:1,735,258...1,740,297 JBrowse link
G Pde6c phosphodiesterase 6C ISO (MGI:3655007|PMID:16723493) MGI PMID:16723493 MGI:3655007 NCBI chrNW_004936601:1,343,538...1,393,605 JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin ISO RGD PMID:2525480 RGD:6893558 NCBI chrNW_004936602:896,730...901,480 JBrowse link
regulation of mRNA stability involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npm1 nucleophosmin 1 ISO (PMID:12080348) UniProtKB PMID:12080348 NCBI chrNW_004936609:3,712,628...3,725,635 JBrowse link
regulation of rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor interacting protein like 1 ISO (MGI:3054118|PMID:15365173)
(MGI:3054134|PMID:15365178)
MGI PMID:15365173, PMID:15365178 MGI:3054118, MGI:3054134 NCBI chrNW_004936677:1,539,502...1,548,343 JBrowse link
G Grk1 G protein-coupled receptor kinase 1 ISO (PMID:15946941) UniProtKB PMID:15946941 NCBI chrNW_004936472:152,202...165,134 JBrowse link
regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek1 checkpoint kinase 1 ISO (MGI:5294291|PMID:18243098) UniProt PMID:18243098 MGI:5294291 NCBI chrNW_004936743:2,004,535...2,027,287 JBrowse link
regulation of translation involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl26 ribosomal protein L26 ISO (PMID:16213212) CAFA PMID:16213212 NCBI chrNW_004936595:1,603,913...1,609,125 JBrowse link
response to blue light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpt1b carnitine palmitoyltransferase 1B ISO (MGI:6392469|PMID:32040503) UniProt PMID:32040503 MGI:6392469 NCBI chrNW_004936629:246,876...255,537 JBrowse link
G Dct dopachrome tautomerase ISO (PMID:28842328) UniProt PMID:28842328 NCBI chrNW_004936472:15,074,947...15,110,427 JBrowse link
G Kcnj10 potassium inwardly rectifying channel subfamily J member 10 ISO RGD PMID:18450590 RGD:2326038 NCBI chrNW_004936740:555,948...589,219 JBrowse link
G Opn3 opsin 3 ISO (PMID:28842328)
(MGI:6392469|PMID:32040503)
(PMID:30168605)
UniProt PMID:28842328, PMID:30168605, PMID:32040503 MGI:6392469 NCBI chrNW_004936526:8,833,495...8,876,631 JBrowse link
G Tyr tyrosinase ISO (PMID:28842328) UniProt PMID:28842328 NCBI chrNW_004936736:421,623...519,085 JBrowse link
response to high light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mmp9 matrix metallopeptidase 9 ISO RGD PMID:17854381 RGD:8547925 NCBI chrNW_004936514:7,038,240...7,045,873 JBrowse link
G Rdh13 retinol dehydrogenase 13 ISO (MGI:5462166|PMID:22605914) MGI PMID:22605914 MGI:5462166 NCBI chrNW_004936886:356,068...368,525 JBrowse link
response to light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain derived neurotrophic factor ISO RGD PMID:21076359 RGD:8655612 NCBI chrNW_004936540:5,530,081...5,582,765 JBrowse link
G Cat catalase ISO RGD PMID:17514533 RGD:9107626 NCBI chrNW_004936533:3,601,270...3,637,128 JBrowse link
G Cntf ciliary neurotrophic factor ISO RGD PMID:21076359 RGD:8655612 NCBI chrNW_004936581:3,710,171...3,715,753 JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO (MGI:5315031|PMID:22411800) MGI PMID:22411800 MGI:5315031 NCBI chrNW_004936470:28,303,213...28,566,470 JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chrNW_004936529:1,735,258...1,740,297 JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO RGD PMID:17591908 RGD:2302146 NCBI chrNW_004936704:1,079,255...1,093,732 JBrowse link
G Kcnc1 potassium voltage-gated channel subfamily C member 1 ISO RGD PMID:18708127 RGD:9685740 NCBI chrNW_004936528:1,351,687...1,393,926 JBrowse link
G Kcnc2 potassium voltage-gated channel subfamily C member 2 ISO RGD PMID:18708127 RGD:9685740 NCBI chrNW_004936568:3,508,212...3,694,459 JBrowse link
response to low light intensity stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 ISO RGD PMID:1683769 RGD:2326143 NCBI chrNW_004936480:18,862,288...18,882,614 JBrowse link
G Prph2 peripherin 2 ISO RGD PMID:8320859 RGD:8553226 NCBI chrNW_004936476:17,159,756...17,174,226 JBrowse link
response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brsk1 BR serine/threonine kinase 1 ISO (PMID:15150265) UniProtKB PMID:15150265 NCBI chrNW_004936886:541,831...567,197 JBrowse link
G Casp3 caspase 3 ISO (MGI:3615714|PMID:16469926)
(MGI:3691523|PMID:11092819)
MGI PMID:11092819, PMID:16469926 MGI:3615714, MGI:3691523 NCBI chrNW_004936554:4,571,072...4,593,765 JBrowse link
G Casp7 caspase 7 ISO (MGI:3615714|PMID:16469926) MGI PMID:16469926 MGI:3615714 NCBI chrNW_004936486:4,082,664...4,114,942 JBrowse link
G Casp9 caspase 9 ISO (MGI:3691523|PMID:11092819) MGI PMID:11092819 MGI:3691523 NCBI chrNW_004936474:3,178,097...3,196,130 JBrowse link
G Cat catalase ISO RGD PMID:12592055 RGD:9179775 NCBI chrNW_004936533:3,601,270...3,637,128 JBrowse link
G Ccar2 cell cycle and apoptosis regulator 2 ISO (PMID:23352644) UniProtKB PMID:23352644 NCBI chrNW_004936555:6,341,455...6,356,677 JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A ISO (MGI:2675761|PMID:12952892) MGI PMID:12952892 MGI:2675761 NCBI chrNW_004936476:22,717,308...22,725,127 JBrowse link
G Cdkn2d cyclin dependent kinase inhibitor 2D ISO (PMID:15750620) BHF-UCL PMID:15750620 NCBI chrNW_004936659:840,602...843,078 JBrowse link
G Cirbp cold inducible RNA binding protein ISO (PMID:11574538) UniProtKB PMID:11574538 NCBI chrNW_004936588:636,041...639,564 JBrowse link
G CUNH10orf90 chromosome unknown C10orf90 homolog ISO (MGI:5285148|PMID:20843368) UniProt PMID:20843368 MGI:5285148 NCBI chrNW_004936486:14,311,976...14,499,733 JBrowse link
G Ddb2 damage specific DNA binding protein 2 ISO (PMID:12732143) UniProtKB PMID:12732143 NCBI chrNW_004936562:1,960,406...1,974,809 JBrowse link
G Dtl denticleless E3 ubiquitin protein ligase homolog ISO (PMID:18794347) UniProtKB PMID:18794347 NCBI chrNW_004936557:1,347,991...1,389,836 JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO (MGI:3692802|PMID:17020410) MGI PMID:17020410 MGI:3692802 NCBI chrNW_004936706:1,816,561...1,829,638 JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO (PMID:17509950) UniProtKB PMID:17509950 NCBI chrNW_004936469:43,970,002...43,998,279 JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:16678501) UniProtKB PMID:16678501 NCBI chrNW_004936501:2,301,072...2,329,346 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:16916636)
(MGI:3054497|PMID:15340056), (MGI:3655576|PMID:10843671)
UniProtKB
MGI
PMID:10843671, PMID:15340056, PMID:16916636 MGI:3054497, MGI:3655576 NCBI chrNW_004936728:706,499...843,447 JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit ISO (PMID:12732143)
(MGI:3054497|PMID:15340056)
(PMID:7664335)
UniProtKB
MGI
PMID:7664335, PMID:12732143, PMID:15340056 MGI:3054497 NCBI chrNW_004936480:7,560,055...7,609,650 JBrowse link
G Hus1 HUS1 checkpoint clamp component ISO (MGI:2449744|PMID:12529385)
(MGI:2156961|PMID:11790307)
MGI PMID:11790307, PMID:12529385 MGI:2156961, MGI:2449744 NCBI chrNW_004936478:22,393,952...22,414,349 JBrowse link
G LOC101968680 DNA repair protein complementing XP-G cells ISO (PMID:16167068)
(MGI:3041918|PMID:15082767)
(PMID:8710877)
UniProtKB
MGI
PMID:8710877, PMID:15082767, PMID:16167068 MGI:3041918 NCBI chrNW_004936472:8,209,482...8,234,696 JBrowse link
G Map2k7 mitogen-activated protein kinase kinase 7 ISO (PMID:9535930) UniProtKB PMID:9535930 NCBI chrNW_004936588:4,882,191...4,891,807 JBrowse link
G Map4k3 mitogen-activated protein kinase kinase kinase kinase 3 ISO (PMID:9275185) UniProtKB PMID:9275185 NCBI chrNW_004936508:11,885,066...12,062,560 JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISO (PMID:14967141) MGI PMID:14967141 NCBI chrNW_004936728:1,775,746...1,893,895 JBrowse link
G Men1 menin 1 ISO (PMID:16690369) UniProtKB PMID:16690369 NCBI chrNW_004936599:4,504,489...4,510,085 JBrowse link
G Msh6 mutS homolog 6 ISO (MGI:2677657|PMID:14632208) MGI PMID:14632208 MGI:2677657 NCBI chrNW_004936508:4,708,661...4,728,671 JBrowse link
G Pclaf PCNA clamp associated factor ISO (PMID:23000965) UniProtKB PMID:23000965 NCBI chrNW_004936471:24,797,291...24,812,196 JBrowse link
G Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 ISO (MGI:2675761|PMID:12952892) MGI PMID:12952892 MGI:2675761 NCBI chrNW_004936497:4,985,995...4,986,720 JBrowse link
G Pml PML nuclear body scaffold ISO (MGI:3580934|PMID:15626733) MGI PMID:15626733 MGI:3580934 NCBI chrNW_004936471:33,135,186...33,173,218 JBrowse link
G Primpol primase and DNA directed polymerase ISO (PMID:24240614), (PMID:24267451) UniProtKB PMID:24240614, PMID:24267451 NCBI chrNW_004936554:4,536,246...4,571,000 JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 ISO (MGI:4822286|PMID:20647423) UniProt PMID:20647423 MGI:4822286 NCBI chrNW_004936518:1,817,051...1,843,376 JBrowse link
G Rad18 RAD18 E3 ubiquitin protein ligase ISO (MGI:2448116|PMID:12509447) MGI PMID:12509447 MGI:2448116 NCBI chrNW_004936602:4,030,353...4,134,119 JBrowse link
G Rev1 REV1 DNA directed polymerase ISO (PMID:11485998) UniProtKB PMID:11485998 NCBI chrNW_004936661:1,322,907...1,397,990 JBrowse link
G Ro60 Ro60, Y RNA binding protein ISO (MGI:2668758|PMID:12788971)
(MGI:5524977|PMID:14680639)
MGI PMID:12788971, PMID:14680639 MGI:2668758, MGI:5524977 NCBI chrNW_004936638:1,289,452...1,320,522 JBrowse link
G Rpain RPA interacting protein ISO (PMID:16135809) MGI PMID:16135809 NCBI chrNW_004936677:2,376,666...2,384,856 JBrowse link
G Sprtn SprT-like N-terminal domain ISO (PMID:22681887), (PMID:22894931), (PMID:22902628) UniProtKB PMID:22681887, PMID:22894931, PMID:22902628 NCBI chrNW_004936484:19,391,685...19,402,938 JBrowse link
G Tipin TIMELESS interacting protein ISO (MGI:3706226|PMID:17141802) MGI PMID:17141802 MGI:3706226 NCBI chrNW_004936471:26,516,511...26,531,403 JBrowse link
G Tp53 tumor protein p53 ISO (MGI:3032464|PMID:14744935)
(MGI:2675761|PMID:12952892)
(MGI:1858868|PMID:10815637), (MGI:3691523|PMID:11092819)
RGD
MGI
PMID:10815637, PMID:11092819, PMID:12952892, PMID:14744935, PMID:17724205 MGI:1858868, MGI:2675761, MGI:3032464, MGI:3691523, RGD:2290562 NCBI chrNW_004936595:919,807...935,367 JBrowse link
G Tp53i13 tumor protein p53 inducible protein 13 ISO (PMID:14767535) UniProtKB PMID:14767535 NCBI chrNW_004936538:5,680,048...5,683,814 JBrowse link
G Trex1 three prime repair exonuclease 1 ISO (MGI:5908297|PMID:28351661) MGI PMID:28351661 MGI:5908297 NCBI chrNW_004936529:264,535...266,451 JBrowse link
G Trim32 tripartite motif containing 32 ISO (MGI:5009403|PMID:16816390) BHF-UCL PMID:16816390 MGI:5009403 NCBI chrNW_004936487:5,606,690...5,619,856 JBrowse link
G Tyr tyrosinase ISO RGD PMID:6175546 RGD:8694330 NCBI chrNW_004936736:421,623...519,085 JBrowse link
G Uaca uveal autoantigen with coiled-coil domains and ankyrin repeats ISO (MGI:3056865|PMID:15271982) MGI PMID:15271982 MGI:3056865 NCBI chrNW_004936471:30,213,742...30,312,873 JBrowse link
G Ube2a ubiquitin conjugating enzyme E2 A ISO (PMID:1717990) UniProtKB PMID:1717990 NCBI chrNW_004936479:10,330,666...10,340,268 JBrowse link
G Ube2b ubiquitin conjugating enzyme E2 B ISO (PMID:1717990) UniProtKB PMID:1717990 NCBI chrNW_004936647:891,357...913,963 JBrowse link
G Ube4b ubiquitination factor E4B ISO (PMID:11802788) UniProtKB PMID:11802788 NCBI chrNW_004936623:3,934,439...4,051,083 JBrowse link
G Usf1 upstream transcription factor 1 ISO (MGI:3525429|PMID:15358786) BHF-UCL PMID:15358786 MGI:3525429 NCBI chrNW_004936903:352,569...359,350 JBrowse link
G Usp1 ubiquitin specific peptidase 1 ISO (PMID:18082604) UniProtKB PMID:18082604 NCBI chrNW_004936692:147,699...159,921 JBrowse link
G Uvssa UV stimulated scaffold protein A ISO (PMID:22466610), (PMID:22466611), (PMID:22466612) UniProtKB PMID:22466610, PMID:22466611, PMID:22466612 NCBI chrNW_004936477:21,918,091...21,950,895 JBrowse link
G Xpa XPA, DNA damage recognition and repair factor ISO (MGI:3655576|PMID:10843671) MGI PMID:10843671 MGI:3655576 NCBI chrNW_004936524:6,467,365...6,493,556 JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 ISO (PMID:22704558) UniProtKB PMID:22704558 NCBI chrNW_004936469:40,328,850...40,558,797 JBrowse link
response to UV-A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 ISO (PMID:18483258) BHF-UCL PMID:18483258 NCBI chrNW_004936621:620,163...639,115 JBrowse link
G Cryaa crystallin alpha A ISO (MGI:1321356|PMID:9813033) MGI PMID:9813033 MGI:1321356 NCBI chrNW_004936500:931,804...935,185 JBrowse link
G Egfr epidermal growth factor receptor ISO (PMID:18483258) BHF-UCL PMID:18483258 NCBI chrNW_004936678:365,005...560,546 JBrowse link
response to UV-B term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2 apoptosis regulator ISO (MGI:1330635|PMID:10200548) MGI PMID:10200548 MGI:1330635 NCBI chrNW_004936497:2,209,136...2,373,580 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (MGI:1859141|PMID:10850428), (MGI:3699047|PMID:17145777) MGI PMID:10850428, PMID:17145777 MGI:1859141, MGI:3699047 NCBI chrNW_004936728:706,499...843,447 JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 ISO (MGI:3590574|PMID:12660172) MGI PMID:12660172 MGI:3590574 NCBI chrNW_004936500:3,845,320...3,852,000 JBrowse link
G Il12a interleukin 12A ISO (PMID:8992506) UniProtKB PMID:8992506 NCBI chrNW_004936519:6,166,060...6,180,652 JBrowse link
G Il12b interleukin 12B ISO (PMID:8992506) UniProtKB PMID:8992506 NCBI chrNW_004936515:4,056,214...4,066,121 JBrowse link
G Ivl involucrin ISO (PMID:16639001) UniProtKB PMID:16639001 NCBI chrNW_004936580:2,892,316...2,894,085 JBrowse link
G Msh2 mutS homolog 2 ISO (MGI:3487309|PMID:15166087) MGI PMID:15166087 MGI:3487309 NCBI chrNW_004936508:4,943,987...5,013,356 JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit ISO (PMID:15616591) UniProtKB PMID:15616591 NCBI chrNW_004936599:3,800,142...3,810,583 JBrowse link
G Tp53 tumor protein p53 ISO RGD PMID:22559303 RGD:8547754 NCBI chrNW_004936595:919,807...935,367 JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO (MGI:3034118|PMID:15010313) MGI PMID:15010313 MGI:3034118 NCBI chrNW_004936602:118,173...139,884 JBrowse link
response to UV-C term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bak1 BCL2 antagonist/killer 1 ISO RGD PMID:19520675 RGD:2316118 NCBI chrNW_004936476:25,347,608...25,354,772 JBrowse link
G Bcl3 BCL3 transcription coactivator ISO (PMID:16384933) UniProtKB PMID:16384933 NCBI chrNW_004936706:1,410,848...1,427,822 JBrowse link
G Brca2 BRCA2 DNA repair associated ISO (MGI:1203345|PMID:9660919) MGI PMID:9660919 MGI:1203345 NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
G Dcun1d3 defective in cullin neddylation 1 domain containing 3 ISO (PMID:18823379) UniProtKB PMID:18823379 NCBI chrNW_004936501:6,134,221...6,168,641 JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 ISO (MGI:3590574|PMID:12660172) MGI PMID:12660172 MGI:3590574 NCBI chrNW_004936500:3,845,320...3,852,000 JBrowse link
G LOC101968680 DNA repair protein complementing XP-G cells ISO (PMID:17208056) UniProtKB PMID:17208056 NCBI chrNW_004936472:8,209,482...8,234,696 JBrowse link
G Map3k4 mitogen-activated protein kinase kinase kinase 4 ISO (PMID:9305639) UniProtKB PMID:9305639 NCBI chrNW_004936489:11,908,083...11,972,186 JBrowse link
G Polh DNA polymerase eta ISO (PMID:17563354) UniProtKB PMID:17563354 NCBI chrNW_004936476:16,400,026...16,434,538 JBrowse link
G Wrn WRN RecQ like helicase ISO (PMID:17563354) UniProtKB PMID:17563354 NCBI chrNW_004936792:862,659...1,005,065 JBrowse link
G Yy1 YY1 transcription factor ISO (PMID:18026119)
(MGI:5009388|PMID:18026119)
UniProtKB
UniProt
PMID:18026119 MGI:5009388 NCBI chrNW_004936604:3,911,407...3,945,405 JBrowse link
rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chrNW_004936529:1,735,258...1,740,297 JBrowse link
G Opn4 opsin 4 ISO (MGI:4438311|PMID:19793992) MGI PMID:19793992 MGI:4438311 NCBI chrNW_004936804:261,210...272,449 JBrowse link
G Pcp2 Purkinje cell protein 2 ISO (MGI:3817370|PMID:18768681) MGI PMID:18768681 MGI:3817370 NCBI chrNW_004936588:4,681,559...4,683,443 JBrowse link
G Rho rhodopsin ISO RGD PMID:8814134 RGD:6893595 NCBI chrNW_004936602:896,730...901,480 JBrowse link
short-day photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npy neuropeptide Y ISO RGD PMID:19490367 RGD:6480663 NCBI chrNW_004936478:1,289,437...1,296,819 JBrowse link
UV protection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cat catalase ISO (PMID:16644728), (PMID:17053817) UniProtKB PMID:16644728, PMID:17053817 NCBI chrNW_004936533:3,601,270...3,637,128 JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (MGI:1342943|PMID:10454634)
(MGI:3692264|PMID:16682947)
(MGI:63544|PMID:8275084)
MGI PMID:8275084, PMID:10454634, PMID:16682947 MGI:1342943, MGI:3692264, MGI:63544 NCBI chrNW_004936706:1,854,938...1,867,521 JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO (PMID:2835663)
(MGI:1267106|PMID:9651581)
MGI PMID:2835663, PMID:9651581 MGI:1267106 NCBI chrNW_004936706:1,816,561...1,829,638 JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO (MGI:50153|PMID:1747940) MGI PMID:1747940 MGI:50153 NCBI chrNW_004936469:43,970,002...43,998,279 JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (MGI:3027419|PMID:14729965) MGI PMID:14729965 MGI:3027419 NCBI chrNW_004936501:2,301,072...2,329,346 JBrowse link
G Gpx1 glutathione peroxidase 1 ISO (PMID:17097614) BHF-UCL PMID:17097614 NCBI chrNW_004936529:997,943...999,123 JBrowse link
G LOC101968680 DNA repair protein complementing XP-G cells ISO (PMID:7510366)
(MGI:82906|PMID:8703115)
(MGI:77034|PMID:7510366)
MGI PMID:7510366, PMID:8703115 MGI:77034, MGI:82906 NCBI chrNW_004936472:8,209,482...8,234,696 JBrowse link
G Mfap4 microfibril associated protein 4 ISO (PMID:22355679) BHF-UCL PMID:22355679 NCBI chrNW_004936881:369,161...372,628 JBrowse link
G Sdf4 stromal cell derived factor 4 ISO PMID:18355758 BHF-UCL PMID:18355758 RGD:8554427 NCBI chrNW_004936737:1,889,123...1,898,303 JBrowse link
G Xpa XPA, DNA damage recognition and repair factor ISO (PMID:1601884) CAFA PMID:1601884 NCBI chrNW_004936524:6,467,365...6,493,556 JBrowse link
UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr5 actin related protein 5 ISO (PMID:20855601) UniProtKB PMID:20855601 NCBI chrNW_004936561:2,676,515...2,701,447 JBrowse link
G Cul4b cullin 4B ISO (PMID:22334663) UniProtKB PMID:22334663 NCBI chrNW_004936479:9,490,717...9,535,998 JBrowse link
G Ddb1 damage specific DNA binding protein 1 ISO (PMID:22334663) UniProtKB PMID:22334663 NCBI chrNW_004936581:1,710,382...1,742,598 JBrowse link
G Ddb2 damage specific DNA binding protein 2 ISO (PMID:22334663) UniProtKB PMID:22334663 NCBI chrNW_004936562:1,960,406...1,974,809 JBrowse link
G Ino80 INO80 complex ATPase subunit ISO (PMID:20855601) UniProtKB PMID:20855601 NCBI chrNW_004936471:4,374,802...4,478,894 JBrowse link
G LOC101961805 histone H2A type 3 ISO (PMID:22334663) UniProtKB PMID:22334663 NCBI chrNW_004937135:43,069...44,926 JBrowse link
G Mc1r melanocortin 1 receptor ISO (PMID:18292087) BHF-UCL PMID:18292087 NCBI chrNW_004936641:193,885...198,730 JBrowse link
G Sirt1 sirtuin 1 ISO (PMID:20670893) CACAO PMID:20670893 NCBI chrNW_004936521:10,296,097...10,316,673 JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO (PMID:8077226)
(MGI:5427285|PMID:22431748)
CACAO
MGI
PMID:8077226, PMID:22431748 MGI:5427285 NCBI chrNW_004936602:118,173...139,884 JBrowse link
UV-damage excision repair, DNA incision term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO (MGI:3697767|PMID:17049932) MGI PMID:17049932 MGI:3697767 NCBI chrNW_004936602:118,173...139,884 JBrowse link
visual behavior term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dynlrb1 dynein light chain roadblock-type 1 ISO PMID:10816553 UniProt PMID:10816553 RGD:633064 NCBI chrNW_004936561:6,118,849...6,135,001 JBrowse link
G Slc1a2 solute carrier family 1 member 2 ISO (MGI:3608234|PMID:16197522) MGI PMID:16197522 MGI:3608234 NCBI chrNW_004936533:2,779,650...2,918,640 JBrowse link
visual learning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca7 ATP binding cassette subfamily A member 7 ISO (MGI:5774886|PMID:27030769) ARUK-UCL PMID:27030769 MGI:5774886 NCBI chrNW_004936588:460,308...477,382 JBrowse link
G Abcc8 ATP binding cassette subfamily C member 8 ISO RGD PMID:24114458 RGD:10003028 NCBI chrNW_004936528:1,608,782...1,682,873 JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase ISO (MGI:5315777|PMID:22357865) MGI PMID:22357865 MGI:5315777 NCBI chrNW_004936481:9,823,790...9,847,291 JBrowse link
G Adam2 ADAM metallopeptidase domain 2 ISO (MGI:3620328|PMID:16504143) MGI PMID:16504143 MGI:3620328 NCBI chrNW_004936675:393,160...451,851 JBrowse link
G Adra1b adrenoceptor alpha 1B ISO (MGI:1932224|PMID:11222061) MGI PMID:11222061 MGI:1932224 NCBI chrNW_004936515:3,523,799...3,572,467 JBrowse link
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 ISO (MGI:5617942|PMID:20203623) MGI PMID:20203623 MGI:5617942 NCBI chrNW_004936470:5,260,984...5,301,552 JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 ISO (MGI:3522016|PMID:14689444) MGI PMID:14689444 MGI:3522016 NCBI chrNW_004936842:452,682...476,533 JBrowse link
G App amyloid beta precursor protein ISO (MGI:1344078|PMID:10338291) MGI PMID:10338291 MGI:1344078 NCBI chrNW_004936640:1,549,977...1,787,436 JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 ISO (MGI:3696486|PMID:17234593) MGI PMID:17234593 MGI:3696486 NCBI chrNW_004936706:476,473...494,659 JBrowse link
G Atxn1 ataxin 1 ISO (MGI:1270078|PMID:9651231)
(MGI:4818500|PMID:20628574)
MGI PMID:9651231, PMID:20628574 MGI:1270078, MGI:4818500 NCBI chrNW_004936552:2,498,711...2,521,225 JBrowse link
G B4galt2 beta-1,4-galactosyltransferase 2 ISO (MGI:3849110|PMID:19265195) MGI PMID:19265195 MGI:3849110 NCBI chrNW_004936474:25,298,806...25,308,369 JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase ISO (MGI:3620005|PMID:16342120) MGI PMID:16342120 MGI:3620005 NCBI chrNW_004936592:4,728,371...4,833,830 JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C ISO (MGI:3607037|PMID:16251435) MGI PMID:16251435 MGI:3607037 NCBI chrNW_004936606:2,168,104...2,867,560 JBrowse link
G Cacna1e calcium voltage-gated channel subunit alpha1 E ISO (MGI:1932239|PMID:11263998) MGI PMID:11263998 MGI:1932239 NCBI chrNW_004936481:7,694,960...7,908,683 JBrowse link
G Cck cholecystokinin ISO RGD PMID:12450740 RGD:1626100 NCBI chrNW_004936695:2,776,705...2,782,280 JBrowse link
G Cdk5 cyclin dependent kinase 5 ISO (MGI:3720432|PMID:17529984) MGI PMID:17529984 MGI:3720432 NCBI chrNW_004936527:6,478,934...6,483,848 JBrowse link
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit ISO (PMID:15964197)
(MGI:1332977|PMID:10064590), (MGI:3584096|PMID:12876201)
UniProtKB
MGI
PMID:10064590, PMID:12876201, PMID:15964197 MGI:1332977, MGI:3584096 NCBI chrNW_004936580:4,165,255...4,179,285 JBrowse link
G Ckap5 cytoskeleton associated protein 5 ISO (MGI:5546446|PMID:23936366) MGI PMID:23936366 MGI:5546446 NCBI chrNW_004936562:2,269,341...2,369,098 JBrowse link
G Creb1 cAMP responsive element binding protein 1 ISO RGD PMID:25031400 RGD:10059390 NCBI chrNW_004936631:3,721,307...3,785,346 JBrowse link
G Crhr1 corticotropin releasing hormone receptor 1 ISO postnatal blockade improves adult learning and memory RGD PMID:15932935 RGD:1626241 NCBI chrNW_004936541:2,288,847...2,333,129 JBrowse link
G Ctns cystinosin, lysosomal cystine transporter ISO (MGI:3848688|PMID:17977621) MGI PMID:17977621 MGI:3848688 NCBI chrNW_004936677:342,964...360,890 JBrowse link
G Dbh dopamine beta-hydroxylase ISO (MGI:893736|PMID:9189272) MGI PMID:9189272 MGI:893736 NCBI chrNW_004936669:3,302,014...3,326,233 JBrowse link
G Dcdc2 doublecortin domain containing 2 ISO (MGI:5442271|PMID:21883923), (MGI:5698331|PMID:25130614) MGI PMID:21883923, PMID:25130614 MGI:5442271, MGI:5698331 NCBI chrNW_004936671:605,114...736,217 JBrowse link
G Ddhd2 DDHD domain containing 2 ISO (MGI:5608822|PMID:25267624) MGI PMID:25267624 MGI:5608822 NCBI chrNW_004936710:1,593,899...1,616,572 JBrowse link
G Deaf1 DEAF1 transcription factor ISO (MGI:5576037|PMID:24726472) UniProt PMID:24726472 MGI:5576037 NCBI chrNW_004936888:473,651...497,152 JBrowse link
G Drd1 dopamine receptor D1 ISO (MGI:1274984|PMID:9692749), (MGI:3607825|PMID:10585522)
(MGI:3530728|PMID:15684065)
(MGI:3607822|PMID:10884517)
MGI PMID:9692749, PMID:10585522, PMID:10884517, PMID:15684065 MGI:1274984, MGI:3530728, MGI:3607822, MGI:3607825 NCBI chrNW_004936609:790,647...795,187 JBrowse link
G Drd2 dopamine receptor D2 ISO (MGI:3626135|PMID:12097513) MGI PMID:12097513 MGI:3626135 NCBI chrNW_004936612:1,094,686...1,154,149 JBrowse link
G Drd3 dopamine receptor D3 ISO (MGI:3626135|PMID:12097513) MGI PMID:12097513 MGI:3626135 NCBI chrNW_004936536:1,580,732...1,616,726 JBrowse link
G Drd5 dopamine receptor D5 ISO RGD PMID:17142305 RGD:1600982 NCBI chrNW_004936477:16,860,222...16,863,505 JBrowse link
G Foxb1 forkhead box B1 ISO (MGI:3589689|PMID:15654859) UniProt PMID:15654859 MGI:3589689 NCBI chrNW_004936471:20,934,524...20,935,584 JBrowse link
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 ISO (MGI:1858680|PMID:10818139)
(MGI:3703316|PMID:17313573)
(MGI:86085|PMID:9054942)
(MGI:84850|PMID:8980238)
(MGI:3623866|PMID:16611824), (MGI:893741|PMID:9246451)
MGI PMID:8980238, PMID:9054942, PMID:9246451, PMID:10818139, PMID:16611824, PMID:17313573 MGI:1858680, MGI:3623866, MGI:3703316, MGI:84850, MGI:86085, MGI:893741 NCBI chrNW_004936669:814,330...838,881 JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A ISO (MGI:70176|PMID:7816096) MGI PMID:7816096 MGI:70176 NCBI chrNW_004936530:8,286,101...8,612,183 JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO (MGI:2676530|PMID:12972594) MGI PMID:12972594 MGI:2676530 NCBI chrNW_004936495:5,770,988...5,816,157 JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase ISO (MGI:3610917|PMID:12409258) MGI PMID:12409258 MGI:3610917 NCBI chrNW_004936549:1,378,536...1,400,501 JBrowse link
G Hrh1 histamine receptor H1 ISO (MGI:3703474|PMID:17145090) MGI PMID:17145090 MGI:3703474 NCBI chrNW_004936602:2,182,053...2,185,297 JBrowse link
G Hrh2 histamine receptor H2 ISO (MGI:3703474|PMID:17145090) MGI PMID:17145090 MGI:3703474 NCBI chrNW_004936609:624,446...664,049 JBrowse link
G Htt huntingtin ISO (MGI:73644|PMID:7774020) MGI PMID:7774020 MGI:73644 NCBI chrNW_004936477:20,443,101...20,577,167 JBrowse link
G Idua alpha-L-iduronidase ISO (MGI:3771256|PMID:18022143) MGI PMID:18022143 MGI:3771256 NCBI chrNW_004936477:22,200,471...22,215,473 JBrowse link
G Ift20 intraflagellar transport 20 ISO (MGI:5139967|PMID:21734285) MGI PMID:21734285 MGI:5139967 NCBI chrNW_004936538:4,484,484...4,491,688 JBrowse link
G Itgb1 integrin subunit beta 1 ISO (MGI:5315777|PMID:22357865) MGI PMID:22357865 MGI:5315777 NCBI chrNW_004936574:1,465,981...1,495,717 JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase ISO RGD PMID:11112797 RGD:2292520 NCBI chrNW_004936482:17,162,854...17,238,319 JBrowse link
G Kmt2a lysine methyltransferase 2A ISO (MGI:5638946|PMID:25834037) MGI PMID:25834037 MGI:5638946 NCBI chrNW_004936542:3,480,071...3,566,823 JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO (MGI:2157992|PMID:11793011) MGI PMID:11793011 MGI:2157992 NCBI chrNW_004936548:2,078,568...2,113,877 JBrowse link
G LOC101966570 sodium/potassium-transporting ATPase subunit alpha-2 ISO (MGI:3696486|PMID:17234593) MGI PMID:17234593 MGI:3696486 NCBI chrNW_004936740:489,357...514,235 JBrowse link
G Lrrn4 leucine rich repeat neuronal 4 ISO (MGI:5428894|PMID:15870286) MGI PMID:15870286 MGI:5428894 NCBI chrNW_004936485:13,039,430...13,049,359 JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO (MGI:3611151|PMID:16399702) MGI PMID:16399702 MGI:3611151 NCBI chrNW_004936809:902,938...967,771 JBrowse link
G Meis2 Meis homeobox 2 ISO (MGI:5638946|PMID:25834037) MGI PMID:25834037 MGI:5638946 NCBI chrNW_004936471:800,510...1,006,054 JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO RGD PMID:20599569 RGD:10041021 NCBI chrNW_004936474:158,376...282,310 JBrowse link
G Ndrg4 NDRG family member 4 ISO (MGI:5286035|PMID:21636852) BHF-UCL PMID:21636852 MGI:5286035 NCBI chrNW_004936475:10,254,511...10,296,593 JBrowse link
G Neto1 neuropilin and tolloid like 1 ISO (MGI:3836361|PMID:19243221) UniProt PMID:19243221 MGI:3836361 NCBI chrNW_004936756:296,584...403,830 JBrowse link
G Nf1 neurofibromin 1 ISO (MGI:2157992|PMID:11793011)
(MGI:3610622|PMID:16271875)
(MGI:1932770|PMID:11279521)
(MGI:86085|PMID:9054942)
MGI PMID:9054942, PMID:11279521, PMID:11793011, PMID:16271875 MGI:1932770, MGI:2157992, MGI:3610622, MGI:86085 NCBI chrNW_004936538:3,394,623...3,596,025 JBrowse link
G Nlgn3 neuroligin 3 ISO (MGI:3758357|PMID:17823315) MGI PMID:17823315 MGI:3758357 NCBI chrNW_004936762:435,729...458,261 JBrowse link
G Nog noggin ISO RGD PMID:12740172 RGD:10423996 NCBI chrNW_004936490:6,262,651...6,264,069 JBrowse link
G Nps neuropeptide S ISO (MGI:3850784|PMID:19429110) MGI PMID:19429110 MGI:3850784 NCBI chrNW_004936486:15,172,068...15,175,568 JBrowse link
G Nptn neuroplastin ISO RGD PMID:21480899 RGD:9835376 NCBI chrNW_004936471:32,726,953...32,813,429 JBrowse link
G Nts neurotensin ISO RGD PMID:20219557 RGD:9743918 NCBI chrNW_004936507:3,318,982...3,329,248 JBrowse link
G Pde1b phosphodiesterase 1B ISO (MGI:2181913|PMID:12077213)
(MGI:3761427|PMID:17010100)
MGI PMID:12077213, PMID:17010100 MGI:2181913, MGI:3761427 NCBI chrNW_004936512:11,739,219...11,766,264 JBrowse link
G Pde8b phosphodiesterase 8B ISO (MGI:5525232|PMID:22925203) MGI PMID:22925203 MGI:5525232 NCBI chrNW_004936549:5,212,693...5,450,195 JBrowse link
G Pias1 protein inhibitor of activated STAT 1 ISO RGD PMID:25031400 RGD:10059390 NCBI chrNW_004936471:27,925,153...28,055,632 JBrowse link
G Ppp1r1b protein phosphatase 1 regulatory inhibitor subunit 1B ISO (MGI:3761427|PMID:17010100) MGI PMID:17010100 MGI:3761427 NCBI chrNW_004936490:14,822,246...14,831,337 JBrowse link
G Ptprz1 protein tyrosine phosphatase receptor type Z1 ISO RGD PMID:12737936 RGD:9590120 NCBI chrNW_004936605:3,195,893...3,368,102 JBrowse link
G Rag1 recombination activating 1 ISO RGD PMID:22964459 RGD:12907572 NCBI chrNW_004936533:1,817,135...1,827,393 JBrowse link
G Rgs14 regulator of G protein signaling 14 ISO PMID:19574389 UniProt PMID:19574389 RGD:8553361 NCBI chrNW_004936597:1,650,480...1,658,823 JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A ISO (MGI:3692154|PMID:16221497) MGI PMID:16221497 MGI:3692154 NCBI chrNW_004936888:57,212...62,722 JBrowse link
G Sct secretin ISO (MGI:4939559|PMID:21159798) MGI PMID:21159798 MGI:4939559 NCBI chrNW_004936888:459,168...459,919 JBrowse link
G Sgk1 serum/glucocorticoid regulated kinase 1 ISO both spacial learning and enrichment-induced spatial learning facilitation RGD PMID:14656333 RGD:1642778 NCBI chrNW_004936560:1,979,804...2,009,167 JBrowse link
G Slc7a11 solute carrier family 7 member 11 ISO (MGI:4948153|PMID:21490221)
(MGI:5562570|PMID:24548853)
MGI PMID:21490221, PMID:24548853 MGI:4948153, MGI:5562570 NCBI chrNW_004936535:9,177,305...9,242,743 JBrowse link
G Syngap1 synaptic Ras GTPase activating protein 1 ISO (MGI:3580530|PMID:12427827) MGI PMID:12427827 MGI:3580530 NCBI chrNW_004936476:25,446,524...25,474,793 JBrowse link
G Synpo synaptopodin ISO (MGI:2673780|PMID:12928494) SynGO-UCL PMID:12928494 MGI:2673780 NCBI chrNW_004936504:4,321,985...4,358,757 JBrowse link
G Tafa2 TAFA chemokine like family member 2 ISO (MGI:6282943|PMID:30137205) UniProt PMID:30137205 MGI:6282943 NCBI chrNW_004936545:517,910...936,630 JBrowse link
G Tanc1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 ISO (MGI:4845797|PMID:21068316) MGI PMID:21068316 MGI:4845797 NCBI chrNW_004936469:19,428,035...19,651,913 JBrowse link
G Ttc36 tetratricopeptide repeat domain 36 ISO (MGI:6362140|PMID:31537781) MGI PMID:31537781 MGI:6362140 NCBI chrNW_004936542:3,567,469...3,571,393 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12002
    response to stimulus 6424
      response to abiotic stimulus 1331
        response to radiation 498
          response to light stimulus 326
            cellular response to light stimulus + 107
            cone photoresponse recovery 0
            de-etiolation 0
            detection of light stimulus + 43
            energy quenching + 0
            photoperiodism + 27
            photoprotection 0
            phototaxis + 0
            response to UV + 153
            response to blue light + 5
            response to light intensity + 16
            response to red or far red light + 1
            visual behavior + 76
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.