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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA modification
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Accession:GO:0009451 term browser browse the term
Definition:The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
Comment:The term 'RNA editing' (GO:0016547) was merged into 'RNA modification' (GO:0009451) on the basis of statements in the preface of Modification and Editing of RNA (ISBN:1555811337) that there is no clear distinction between modification and editing.
Synonyms:narrow_synonym: RNA editing
 alt_id: GO:0016547
 xref: Wikipedia:RNA_editing


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7-methylguanosine cap hypermethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tgs1 trimethylguanosine synthase 1 JBrowse link 5 16,413,356 16,446,881 RGD:1624291
RGD:13792537
adenosine to inosine editing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adad1 adenosine deaminase domain containing 1 JBrowse link 2 123,790,798 123,848,598 RGD:13792537
G Adad2 adenosine deaminase domain containing 2 JBrowse link 19 52,258,908 52,263,031 RGD:13792537
G Adar adenosine deaminase, RNA-specific JBrowse link 2 189,045,551 189,085,448 RGD:1600115
RGD:13792537
RGD:1624291
G Adarb1 adenosine deaminase, RNA-specific, B1 JBrowse link 20 11,972,352 12,101,022 RGD:631737
RGD:13792537
RGD:1624291
RGD:1600115
G Adarb2 adenosine deaminase, RNA-specific, B2 JBrowse link 17 58,098,979 58,653,137 RGD:13792537
G Mettl3 methyltransferase-like 3 JBrowse link 15 28,710,299 28,721,491 RGD:1624291
G Nudt16 nudix hydrolase 16 JBrowse link 8 113,673,069 113,675,124 RGD:1624291
base conversion or substitution editing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adar adenosine deaminase, RNA-specific JBrowse link 2 189,045,551 189,085,448 RGD:1624291
G Adarb1 adenosine deaminase, RNA-specific, B1 JBrowse link 20 11,972,352 12,101,022 RGD:10450892
cap1 mRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmtr1 cap methyltransferase 1 JBrowse link 20 8,324,968 8,385,174 RGD:1600115
RGD:13792537
RGD:1624291
G Cmtr2 cap methyltransferase 2 JBrowse link 19 41,426,536 41,433,367 RGD:13792537
cap2 mRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmtr2 cap methyltransferase 2 JBrowse link 19 41,426,536 41,433,367 RGD:1624291
RGD:13792537
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mtfmt mitochondrial methionyl-tRNA formyltransferase JBrowse link 8 70,952,209 70,986,393 RGD:13792537
cytidine to uridine editing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G A1cf APOBEC1 complementation factor JBrowse link 1 250,426,027 250,514,245 RGD:8553404
RGD:1600115
RGD:1624291
RGD:9587747
G Aicda activation-induced cytidine deaminase JBrowse link 4 155,359,909 155,371,104 RGD:13792537
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 4 155,386,367 155,414,034 RGD:625559
RGD:13792537
RGD:1624291
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 JBrowse link 9 14,529,218 14,542,731 RGD:1624291
RGD:13792537
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 JBrowse link 7 121,108,108 121,128,346 RGD:13792537
G Rbm47 RNA binding motif protein 47 JBrowse link 14 43,701,944 43,839,803 RGD:1624291
enzyme-directed rRNA 2'-O-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:1600115
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:1600115
RGD:1624291
G LOC100911166 RNA pseudouridylate synthase domain-containing protein 2-like JBrowse link 3 112,519,789 112,524,281 RGD:13792537
G Rpusd1 RNA pseudouridine synthase domain containing 1 JBrowse link 10 15,099,104 15,102,968 RGD:13792537
G Rpusd2 RNA pseudouridine synthase domain containing 2 JBrowse link 3 110,835,654 110,840,903 RGD:13792537
G Tsr3 TSR3 ribosome maturation factor JBrowse link 10 14,598,014 14,600,576 RGD:1624291
miRNA 2'-O-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcdin3d BCDIN3 domain containing RNA methyltransferase JBrowse link 7 141,132,106 141,136,700 RGD:1600115
RGD:1624291
mitochondrial tRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 JBrowse link X 21,696,796 21,699,241 RGD:1600115
RGD:1624291
G Trmt5 tRNA methyltransferase 5 JBrowse link 6 96,164,579 96,171,680 RGD:1624291
RGD:13792537
mitochondrial tRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 JBrowse link 3 149,835,953 149,870,429 RGD:1624291
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mto1 mitochondrial tRNA translation optimization 1 JBrowse link 8 85,807,703 85,832,263 RGD:1624291
RGD:13792537
mRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbll1 Cbl proto-oncogene like 1 JBrowse link 6 50,772,718 50,786,861 RGD:1624291
G Cmtr1 cap methyltransferase 1 JBrowse link 20 8,324,968 8,385,174 RGD:1624291
RGD:1600115
G LOC103692719 tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A JBrowse link 6 136,244,466 136,250,496 RGD:1600115
G Mettl14 methyltransferase like 14 JBrowse link 2 227,566,811 227,583,047 RGD:1624291
G Mettl16 methyltransferase like 16 JBrowse link 10 61,626,595 61,682,947 RGD:1624291
RGD:1600115
G Mettl3 methyltransferase-like 3 JBrowse link 15 28,710,299 28,721,491 RGD:1624291
G Mettl8 methyltransferase like 8 JBrowse link 3 57,257,394 57,642,096 RGD:1624291
G Nsun2 NOP2/Sun RNA methyltransferase 2 JBrowse link 1 36,295,650 36,319,906 RGD:1624291
G Pcif1 PDX1 C-terminal inhibiting factor 1 JBrowse link 3 161,343,883 161,356,815 RGD:1624291
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1624291
RGD:1600115
G Trmt6 tRNA methyltransferase 6 JBrowse link 3 125,458,692 125,470,413 RGD:1624291
G Trmt61a tRNA methyltransferase 61A JBrowse link 6 136,150,768 136,156,785 RGD:1600115
RGD:1624291
G Virma vir like m6A methyltransferase associated JBrowse link 5 25,042,743 25,121,403 RGD:1624291
G Wtap WT1 associated protein JBrowse link 1 47,942,500 47,967,633 RGD:1624291
RGD:13792537
G Zc3h13 zinc finger CCCH type containing 13 JBrowse link 15 57,340,522 57,405,287 RGD:1624291
mRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G A1cf APOBEC1 complementation factor JBrowse link 1 250,426,027 250,514,245 RGD:1624291
RGD:1600115
G Adarb1 adenosine deaminase, RNA-specific, B1 JBrowse link 20 11,972,352 12,101,022 RGD:1358272
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 4 155,386,367 155,414,034 RGD:634661
RGD:1624291
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 JBrowse link 9 14,529,218 14,542,731 RGD:1624291
G Dnajb11 DnaJ heat shock protein family (Hsp40) member B11 JBrowse link 11 81,741,342 81,757,806 RGD:1624291
mRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:13792537
G Pus1 pseudouridine synthase 1 JBrowse link 12 51,936,721 51,945,930 RGD:13792537
G Pus3 pseudouridine synthase 3 JBrowse link 8 36,760,874 36,769,167 RGD:13792537
G Pus7 pseudouridine synthase 7 JBrowse link 4 7,889,727 7,931,357 RGD:1624291
G Trub1 TruB pseudouridine synthase family member 1 JBrowse link 1 278,311,362 278,418,347 RGD:1600115
RGD:13792537
RGD:1624291
negative regulation of mRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bag4 BAG cochaperone 4 JBrowse link 16 71,057,709 71,075,874 RGD:2325853
G Hnrnpc heterogeneous nuclear ribonucleoprotein C JBrowse link 15 28,486,605 28,517,353 RGD:10041038
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein JBrowse link 8 96,100,692 96,266,342 RGD:10059415
oxidative RNA demethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh1 alkB homolog 1, histone H2A dioxygenase JBrowse link 6 111,456,096 111,476,829 RGD:1624291
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase JBrowse link 10 105,781,752 105,787,803 RGD:1600115
RGD:1624291
oxidative single-stranded RNA demethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase JBrowse link 3 82,874,242 82,907,467 RGD:1624291
G Alkbh5 alkB homolog 5, RNA demethylase JBrowse link 10 46,906,314 46,927,759 RGD:1600115
RGD:1624291
RGD:13792537
G Fto FTO, alpha-ketoglutarate dependent dioxygenase JBrowse link 19 16,774,549 17,115,098 RGD:1624291
RGD:13792537
RGD:1600115
positive regulation of mRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 4 155,386,367 155,414,034 RGD:10041038
primary miRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mettl3 methyltransferase-like 3 JBrowse link 15 28,710,299 28,721,491 RGD:1624291
RGD:13792537
pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:1600115
G Gar1 GAR1 ribonucleoprotein JBrowse link 2 235,250,453 235,258,464 RGD:1600115
G Naf1 nuclear assembly factor 1 ribonucleoprotein JBrowse link 16 24,582,000 24,612,773 RGD:1600115
G Pus7 pseudouridine synthase 7 JBrowse link 4 7,889,727 7,931,357 RGD:13792537
G Pus7l pseudouridine synthase 7 like JBrowse link 7 135,765,307 135,803,818 RGD:13792537
G Rpusd3 RNA pseudouridine synthase D3 JBrowse link 4 145,361,937 145,370,992 RGD:1600115
G Rpusd4 RNA pseudouridine synthase D4 JBrowse link 8 36,467,706 36,477,190 RGD:1600115
G Trub2 TruB pseudouridine synthase family member 2 JBrowse link 3 8,338,479 8,348,746 RGD:1600115
RNA (guanine-N7)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mettl1 methyltransferase like 1 JBrowse link 7 70,328,470 70,333,045 RGD:13792537
RNA 5'-cap (guanine-N7)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ramac RNA guanine-7 methyltransferase activating subunit JBrowse link 1 143,583,675 143,589,563 RGD:1600115
G Rnmt RNA (guanine-7-) methyltransferase JBrowse link 18 64,084,746 64,108,246 RGD:1600115
RNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07012856.1 RGD:1600115
G Bcdin3d BCDIN3 domain containing RNA methyltransferase JBrowse link 7 141,132,106 141,136,700 RGD:1624291
RGD:1600115
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 JBrowse link X 14,993,685 15,006,010 RGD:13792537
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:1600115
RGD:13792537
RGD:1624291
G Henmt1 HEN methyltransferase 1 JBrowse link 2 211,740,571 211,753,718 RGD:1624291
RGD:1600115
G LOC103690007 5-methylcytosine rRNA methyltransferase NSUN4 JBrowse link 5 134,362,953 134,383,690 RGD:13792537
G Mepce methylphosphate capping enzyme JBrowse link 12 21,721,246 21,725,965 RGD:1624291
G Mettl14 methyltransferase like 14 JBrowse link 2 227,566,811 227,583,047 RGD:1624291
G Mettl16 methyltransferase like 16 JBrowse link 10 61,626,595 61,682,947 RGD:1624291
G Mettl3 methyltransferase-like 3 JBrowse link 15 28,710,299 28,721,491 RGD:1624291
RGD:13792537
G Mettl4 methyltransferase like 4 JBrowse link 9 119,871,519 119,953,248 RGD:1600115
G Mrm2 mitochondrial rRNA methyltransferase 2 JBrowse link 12 16,398,749 16,403,656 RGD:13792537
G Nop2 NOP2 nucleolar protein JBrowse link 4 157,646,759 157,658,502 RGD:13792537
G Nsun2 NOP2/Sun RNA methyltransferase 2 JBrowse link 1 36,295,650 36,319,906 RGD:13792537
G Nsun3 NOP2/Sun RNA methyltransferase 3 JBrowse link 11 38,535,971 38,590,274 RGD:13792537
G Nsun4 NOP2/Sun RNA methyltransferase 4 JBrowse link 5 134,885,377 134,905,492 RGD:13792537
G Nsun5 NOP2/Sun RNA methyltransferase 5 JBrowse link 12 24,341,940 24,346,900 RGD:13792537
G Nsun6 NOP2/Sun RNA methyltransferase 6 JBrowse link 17 82,020,316 82,060,533 RGD:13792537
G Rbm15 RNA binding motif protein 15 JBrowse link 2 210,079,678 210,090,200 RGD:1624291
G Rbm15b RNA binding motif protein 15B JBrowse link 8 115,618,242 115,623,068 RGD:1624291
G Trmt2a tRNA methyltransferase 2 homolog A JBrowse link 11 86,885,671 86,890,482 RGD:1600115
rRNA (guanine-N7)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bud23 BUD23, rRNA methyltransferase and ribosome maturation factor JBrowse link 12 24,669,626 24,680,833 RGD:1624291
RGD:13792537
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link 1 222,167,927 222,168,780 RGD:1624291
RGD:13792537
rRNA 2'-O-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mrm1 mitochondrial rRNA methyltransferase 1 JBrowse link 10 72,136,241 72,143,075 RGD:1600115
G Mrm3 mitochondrial rRNA methyltransferase 3 JBrowse link 10 64,398,308 64,406,193 RGD:1600115
rRNA acetylation involved in maturation of SSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nat10 N-acetyltransferase 10 JBrowse link 3 93,658,119 93,698,136 RGD:13792537
rRNA base methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Emg1 EMG1 N1-specific pseudouridine methyltransferase JBrowse link 4 157,222,366 157,230,647 RGD:13792537
G Fdxacb1 ferredoxin-fold anticodon binding domain containing 1 JBrowse link 8 55,196,758 55,201,610 RGD:13792537
G Mettl15 methyltransferase like 15 JBrowse link 3 100,186,106 100,366,148 RGD:13792537
G Nop2 NOP2 nucleolar protein JBrowse link 4 157,646,759 157,658,502 RGD:13792537
G Nsun5 NOP2/Sun RNA methyltransferase 5 JBrowse link 12 24,341,940 24,346,900 RGD:13792537
RGD:1624291
rRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmt2 base methyltransferase of 25S rRNA 2 homolog JBrowse link 4 40,064,131 40,136,074 RGD:1600115
G Dimt1 DIMT1 rRNA methyltransferase and ribosome maturation factor JBrowse link 2 38,120,562 38,144,871 RGD:1624291
RGD:13792537
G Fbl fibrillarin JBrowse link 1 85,103,519 85,112,619 RGD:1600115
RGD:13792537
RGD:1624291
G Fbll1 fibrillarin-like 1 JBrowse link 10 20,620,957 20,622,600 RGD:13792537
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:13792537
G LOC103690007 5-methylcytosine rRNA methyltransferase NSUN4 JBrowse link 5 134,362,953 134,383,690 RGD:13792537
G Mettl5 methyltransferase like 5 JBrowse link 3 56,101,597 56,113,823 RGD:1624291
G Mrm2 mitochondrial rRNA methyltransferase 2 JBrowse link 12 16,398,749 16,403,656 RGD:1600115
G Nsun3 NOP2/Sun RNA methyltransferase 3 JBrowse link 11 38,535,971 38,590,274 RGD:13792537
G Nsun4 NOP2/Sun RNA methyltransferase 4 JBrowse link 5 134,885,377 134,905,492 RGD:1624291
RGD:13792537
G Tfb1m transcription factor B1, mitochondrial JBrowse link 1 44,433,116 44,474,674 RGD:1600115
RGD:13792537
G Tfb2m transcription factor B2, mitochondrial JBrowse link 13 97,820,493 97,838,275 RGD:13792537
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link 1 222,167,927 222,168,780 RGD:1624291
G Zcchc4 zinc finger CCHC-type containing 4 JBrowse link 14 60,511,494 60,553,167 RGD:1600115
RGD:13792537
RGD:1624291
rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:1624291
RGD:13792537
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 JBrowse link 10 37,069,387 37,072,758 RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:13792537
G Nop10 NOP10 ribonucleoprotein JBrowse link 3 103,747,654 103,748,739 RGD:13792537
snoRNA guided rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:633420
G Gar1 GAR1 ribonucleoprotein JBrowse link 2 235,250,453 235,258,464 RGD:633420
RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:633420
G Nop10 NOP10 ribonucleoprotein JBrowse link 3 103,747,654 103,748,739 RGD:633420
snRNA (adenine-N6)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mettl16 methyltransferase like 16 JBrowse link 10 61,626,595 61,682,947 RGD:1624291
RGD:1600115
G Mettl4 methyltransferase like 4 JBrowse link 9 119,871,519 119,953,248 RGD:1624291
snRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC100910540 7SK snRNA methylphosphate capping enzyme-like JBrowse link 12 21,981,708 21,986,474 RGD:13792537
G Mepce methylphosphate capping enzyme JBrowse link 12 21,721,246 21,725,965 RGD:13792537
RGD:1624291
snRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:13792537
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 JBrowse link 10 37,069,387 37,072,758 RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:13792537
G Nop10 NOP10 ribonucleoprotein JBrowse link 3 103,747,654 103,748,739 RGD:13792537
tRNA (guanine-N7)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mettl1 methyltransferase like 1 JBrowse link 7 70,328,470 70,333,045 RGD:1600115
G Wdr4 WD repeat domain 4 JBrowse link 20 10,240,571 10,264,818 RGD:1600115
tRNA acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nat10 N-acetyltransferase 10 JBrowse link 3 93,658,119 93,698,136 RGD:1600115
tRNA C5-cytosine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nsun6 NOP2/Sun RNA methyltransferase 6 JBrowse link 17 82,020,316 82,060,533 RGD:1624291
tRNA demethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh1 alkB homolog 1, histone H2A dioxygenase JBrowse link 6 111,456,096 111,476,829 RGD:1624291
tRNA dihydrouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dus1l dihydrouridine synthase 1-like JBrowse link 10 109,972,018 109,979,113 RGD:1600115
G Dus2 dihydrouridine synthase 2 JBrowse link 19 37,990,374 38,033,590 RGD:1624291
RGD:13792537
G Dus3l dihydrouridine synthase 3-like JBrowse link 9 10,289,440 10,294,213 RGD:1600115
G Dus4l dihydrouridine synthase 4-like JBrowse link 6 50,925,987 50,943,546 RGD:1600115
tRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh8 alkB homolog 8, tRNA methyltransferase JBrowse link 6 18,877,885 18,952,773 RGD:1624291
G Bcdin3d BCDIN3 domain containing RNA methyltransferase JBrowse link 7 141,132,106 141,136,700 RGD:1600115
RGD:1624291
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 JBrowse link X 14,993,685 15,006,010 RGD:13792537
G Gtpbp3 GTP binding protein 3 JBrowse link 16 19,897,135 19,902,226 RGD:13792537
G Lcmt2 leucine carboxyl methyltransferase 2 JBrowse link 3 113,089,646 113,091,770 RGD:13792537
G LOC103692719 tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A JBrowse link 6 136,244,466 136,250,496 RGD:13792537
G Mettl1 methyltransferase like 1 JBrowse link 7 70,328,470 70,333,045 RGD:13792537
G Mettl2 methyltransferase like 2 JBrowse link 10 93,353,944 93,367,769 RGD:1624291
G Mettl6 methyltransferase like 6 JBrowse link 16 7,559,964 7,588,841 RGD:1624291
G Mto1 mitochondrial tRNA translation optimization 1 JBrowse link 8 85,807,703 85,832,263 RGD:13792537
G Nsun2 NOP2/Sun RNA methyltransferase 2 JBrowse link 1 36,295,650 36,319,906 RGD:1624291
RGD:13792537
G Nsun6 NOP2/Sun RNA methyltransferase 6 JBrowse link 17 82,020,316 82,060,533 RGD:1624291
G Tarbp1 TAR (HIV-1) RNA binding protein 1 JBrowse link 19 59,331,399 59,384,807 RGD:13792537
G Thada THADA, armadillo repeat containing JBrowse link 6 7,423,555 7,741,431 RGD:13792537
G Thumpd2 THUMP domain containing 2 JBrowse link 6 3,743,080 3,794,512 RGD:13792537
G Thumpd3 THUMP domain containing 3 JBrowse link 4 144,985,850 145,010,164 RGD:13792537
G Trdmt1 tRNA aspartic acid methyltransferase 1 JBrowse link 17 80,824,652 80,859,585 RGD:1624291
RGD:1600115
G Trmo tRNA methyltransferase O JBrowse link 5 61,992,507 62,001,065 RGD:1624291
RGD:1600115
G Trmt10a tRNA methyltransferase 10A JBrowse link 2 243,422,811 243,437,533 RGD:1600115
RGD:1624291
G Trmt10b tRNA methyltransferase 10B JBrowse link 5 60,841,517 60,866,480 RGD:1600115
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1600115
G Trmt11 tRNA methyltransferase 11 homolog JBrowse link 1 29,432,109 29,576,079 RGD:1600115
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link 1 222,167,927 222,168,780 RGD:13792537
G Trmt12 tRNA methyltransferase 12 JBrowse link 7 98,748,547 98,750,173 RGD:13792537
G Trmt13 tRNA methyltransferase 13 homolog JBrowse link 2 219,615,665 219,628,824 RGD:13792537
G Trmt44 tRNA methyltransferase 44 JBrowse link 14 80,361,490 80,379,408 RGD:13792537
G Trmt5 tRNA methyltransferase 5 JBrowse link 6 96,164,579 96,171,680 RGD:13792537
G Trmt6 tRNA methyltransferase 6 JBrowse link 3 125,458,692 125,470,413 RGD:1600115
G Trmt61a tRNA methyltransferase 61A JBrowse link 6 136,150,768 136,156,785 RGD:13792537
G Trmt9b tRNA methyltransferase 9B (putative) JBrowse link 16 59,316,145 59,368,559 RGD:1600115
G Tyw3 tRNA-yW synthesizing protein 3 homolog JBrowse link 2 260,861,825 260,884,270 RGD:13792537
tRNA methylthiolation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 JBrowse link 3 149,835,953 149,870,429 RGD:1600115
G Cdkal1 CDK5 regulatory subunit associated protein 1-like 1 JBrowse link 17 36,451,031 37,157,882 RGD:1624291
tRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07005588.1 RGD:1600115
G AABR07005618.1 RGD:13792537
G Aars alanyl-tRNA synthetase JBrowse link 19 43,193,264 43,215,281 RGD:1600115
RGD:13792537
RGD:1624291
G Aars2 alanyl-tRNA synthetase 2, mitochondrial JBrowse link 9 17,869,301 17,881,762 RGD:13792537
G Ankrd16 ankyrin repeat domain 16 JBrowse link 17 70,384,883 70,398,089 RGD:1600115
RGD:1624291
G Dtwd1 DTW domain containing 1 JBrowse link 3 118,427,790 118,443,003 RGD:1600115
RGD:1624291
G Dtwd2 DTW domain containing 2 JBrowse link 18 43,857,371 43,945,732 RGD:1624291
G Mettl1 methyltransferase like 1 JBrowse link 7 70,328,470 70,333,045 RGD:1624291
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 JBrowse link 8 22,447,057 22,454,328 RGD:13792537
G RGD1311345 similar to CG9752-PA JBrowse link 17 6,683,152 6,690,724 RGD:13792537
G Thg1l tRNA-histidine guanylyltransferase 1-like JBrowse link 10 31,043,647 31,052,092 RGD:1600115
G Trit1 tRNA isopentenyltransferase 1 JBrowse link 5 140,711,943 140,756,893 RGD:13792537
G Trub1 TruB pseudouridine synthase family member 1 JBrowse link 1 278,311,362 278,418,347 RGD:13792537
G Wdr4 WD repeat domain 4 JBrowse link 20 10,240,571 10,264,818 RGD:1624291
tRNA N1-guanine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trmt5 tRNA methyltransferase 5 JBrowse link 6 96,164,579 96,171,680 RGD:13792537
tRNA N2-guanine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trmt1 tRNA methyltransferase 1 JBrowse link 19 25,798,262 25,813,458 RGD:13792537
G Trmt1l tRNA methyltransferase 1-like JBrowse link 13 68,785,889 68,819,018 RGD:13792537
tRNA nucleoside ribose methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 JBrowse link X 14,993,685 15,006,010 RGD:1600115
tRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pus1 pseudouridine synthase 1 JBrowse link 12 51,936,721 51,945,930 RGD:1624291
RGD:13792537
G Pus10 pseudouridine synthase 10 JBrowse link 14 108,411,941 108,479,696 RGD:13792537
RGD:1624291
G Pus3 pseudouridine synthase 3 JBrowse link 8 36,760,874 36,769,167 RGD:1624291
RGD:13792537
G Pus7 pseudouridine synthase 7 JBrowse link 4 7,889,727 7,931,357 RGD:1624291
G Pusl1 pseudouridine synthase like 1 JBrowse link 5 173,326,755 173,339,934 RGD:13792537
tRNA thio-modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctu1 cytosolic thiouridylase subunit 1 JBrowse link 1 99,599,608 99,605,412 RGD:1600115
G Ctu2 cytosolic thiouridylase subunit 2 JBrowse link 19 55,300,531 55,305,543 RGD:1600115
G Mocs3 molybdenum cofactor synthesis 3 JBrowse link 3 164,986,421 164,988,381 RGD:1624291
G Urm1 ubiquitin related modifier 1 JBrowse link 3 8,389,024 8,405,868 RGD:1624291
tRNA threonylcarbamoyladenosine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Osgep O-sialoglycoprotein endopeptidase JBrowse link 15 27,842,447 27,849,866 RGD:1600115
RGD:1624291
G Osgepl1 O-sialoglycoprotein endopeptidase-like 1 JBrowse link 9 53,084,042 53,098,029 RGD:1600115
G Tprkb Tp53rk binding protein JBrowse link 4 117,589,527 117,604,481 RGD:1600115
RGD:1624291
tRNA wobble adenosine to inosine editing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adat2 adenosine deaminase, tRNA-specific 2 JBrowse link 1 7,726,447 7,743,112 RGD:13792537
G Adat3 adenosine deaminase, tRNA-specific 3 JBrowse link 7 11,977,285 11,981,814 RGD:13792537
tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Elp1 elongator complex protein 1 JBrowse link 5 73,503,406 73,552,798 RGD:13792537
G Elp3 elongator acetyltransferase complex subunit 3 JBrowse link 15 48,942,866 49,005,074 RGD:13792537
tRNA wobble base cytosine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nsun3 NOP2/Sun RNA methyltransferase 3 JBrowse link 11 38,535,971 38,590,274 RGD:1624291
tRNA wobble cytosine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh1 alkB homolog 1, histone H2A dioxygenase JBrowse link 6 111,456,096 111,476,829 RGD:1624291
tRNA wobble position uridine thiolation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctu1 cytosolic thiouridylase subunit 1 JBrowse link 1 99,599,608 99,605,412 RGD:13792537
G Ctu2 cytosolic thiouridylase subunit 2 JBrowse link 19 55,300,531 55,305,543 RGD:13792537
G Mocs3 molybdenum cofactor synthesis 3 JBrowse link 3 164,986,421 164,988,381 RGD:13792537
G Trmu tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase JBrowse link 7 126,756,140 126,772,749 RGD:13792537
G Urm1 ubiquitin related modifier 1 JBrowse link 3 8,389,024 8,405,868 RGD:13792537
tRNA wobble uridine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07053185.1 RGD:1600115
G Alkbh8 alkB homolog 8, tRNA methyltransferase JBrowse link 6 18,877,885 18,952,773 RGD:1624291
G Ctu1 cytosolic thiouridylase subunit 1 JBrowse link 1 99,599,608 99,605,412 RGD:1600115
G Ctu2 cytosolic thiouridylase subunit 2 JBrowse link 19 55,300,531 55,305,543 RGD:1600115
G Dph3 diphthamide biosynthesis 3 JBrowse link 16 8,202,048 8,207,492 RGD:13792537
G Elp1 elongator complex protein 1 JBrowse link 5 73,503,406 73,552,798 RGD:1600115
G Elp2 elongator acetyltransferase complex subunit 2 JBrowse link 18 16,544,515 16,581,086 RGD:1600115
G Elp5 elongator acetyltransferase complex subunit 5 JBrowse link 10 56,578,980 56,590,706 RGD:1600115
G Elp6 elongator acetyltransferase complex subunit 6 JBrowse link 8 118,525,770 118,541,074 RGD:1600115
G Gtpbp3 GTP binding protein 3 JBrowse link 16 19,897,135 19,902,226 RGD:13792537
G Kti12 KTI12 chromatin associated homolog JBrowse link 5 128,464,035 128,465,557 RGD:13792537
G LOC365839 similar to elongation protein 4 homolog JBrowse link 2 186,630,203 186,631,703 RGD:1600115
G Mocs3 molybdenum cofactor synthesis 3 JBrowse link 3 164,986,421 164,988,381 RGD:1624291
G Mto1 mitochondrial tRNA translation optimization 1 JBrowse link 8 85,807,703 85,832,263 RGD:1624291
RGD:13792537
G Trmt9b tRNA methyltransferase 9B (putative) JBrowse link 16 59,316,145 59,368,559 RGD:13792537
G Urm1 ubiquitin related modifier 1 JBrowse link 3 8,389,024 8,405,868 RGD:1624291
tRNA-guanine transglycosylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 JBrowse link 8 22,447,057 22,454,328 RGD:1624291
RGD:1600115
G Qtrt2 queuine tRNA-ribosyltransferase accessory subunit 2 JBrowse link 11 61,748,822 61,779,631 RGD:1624291
RGD:13792537
G RGD1311345 similar to CG9752-PA JBrowse link 17 6,683,152 6,690,724 RGD:13792537
U6 2'-O-snRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Larp7 La ribonucleoprotein 7, transcriptional regulator JBrowse link 2 231,866,888 231,882,002 RGD:1600115
RGD:1624291
wybutosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lcmt2 leucine carboxyl methyltransferase 2 JBrowse link 3 113,089,646 113,091,770 RGD:13792537
G Trmt12 tRNA methyltransferase 12 JBrowse link 7 98,748,547 98,750,173 RGD:13792537
G Tyw1 tRNA-yW synthesizing protein 1 homolog JBrowse link 12 29,824,990 29,919,240 RGD:13792537
G Tyw3 tRNA-yW synthesizing protein 3 homolog JBrowse link 2 260,861,825 260,884,270 RGD:13792537
G Tyw5 tRNA-yW synthesizing protein 5 JBrowse link 9 64,077,841 64,096,265 RGD:1624291
RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19576
    metabolic process 11899
      organic substance metabolic process 11297
        macromolecule metabolic process 9765
          macromolecule modification 4081
            RNA modification 161
              RNA acetylation + 1
              RNA methylation + 78
              RNA nucleotide deletion + 0
              RNA nucleotide insertion + 0
              base conversion or substitution editing + 15
              chloroplast RNA modification + 0
              mRNA modification + 29
              mitochondrial RNA modification + 4
              oxidative RNA demethylation + 5
              primary miRNA modification + 1
              pseudouridine synthesis + 20
              rRNA modification + 32
              snRNA modification + 9
              tRNA modification + 84
Path 2
Term Annotations click to browse term
  biological_process 19576
    metabolic process 11899
      cellular metabolic process 10737
        cellular aromatic compound metabolic process 5503
          nucleobase-containing compound metabolic process 5276
            nucleic acid metabolic process 4782
              RNA metabolic process 4290
                RNA modification 161
                  RNA acetylation + 1
                  RNA methylation + 78
                  RNA nucleotide deletion + 0
                  RNA nucleotide insertion + 0
                  base conversion or substitution editing + 15
                  chloroplast RNA modification + 0
                  mRNA modification + 29
                  mitochondrial RNA modification + 4
                  oxidative RNA demethylation + 5
                  primary miRNA modification + 1
                  pseudouridine synthesis + 20
                  rRNA modification + 32
                  snRNA modification + 9
                  tRNA modification + 84
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.