ONTOLOGY REPORT - ANNOTATIONS


Term:detection of abiotic stimulus
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Accession:GO:0009582 term browser browse the term
Definition:The series of events in which an (non-living) abiotic stimulus is received by a cell and converted into a molecular signal.
Synonyms:related_synonym: perception of abiotic stimulus


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absorption of visible light term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rho rhodopsin JBrowse link 4 147,832,136 147,837,298 RGD:1600115
adaptation of rhodopsin mediated signaling term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rdh11 retinol dehydrogenase 11 JBrowse link 6 102,356,498 102,372,618 RGD:1624291
G Rs1 retinoschisin 1 JBrowse link X 35,749,957 35,777,243 RGD:1624291
RGD:1600115
detection of gravity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nox3 NADPH oxidase 3 JBrowse link 1 44,550,994 44,615,760 RGD:1624291
RGD:1600115
G Otop1 otopetrin 1 JBrowse link 14 77,236,278 77,263,729 RGD:1624291
RGD:1600115
detection of light stimulus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pde6b phosphodiesterase 6B JBrowse link 14 2,328,690 2,371,913 RGD:1624291
RGD:1600115
G Rho rhodopsin JBrowse link 4 147,832,136 147,837,298 RGD:1624291
detection of light stimulus involved in visual perception term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp8a2 ATPase phospholipid transporting 8A2 JBrowse link 15 39,955,689 40,488,737 RGD:1624291
RGD:1600115
G Best1 bestrophin 1 JBrowse link 1 226,033,146 226,049,893 RGD:1624291
G Cacna1f calcium voltage-gated channel subunit alpha1 F JBrowse link X 15,712,709 15,741,135 RGD:1624291
RGD:1600115
G Cacna2d4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 JBrowse link 4 151,298,548 151,409,263 RGD:1624291
RGD:1600115
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 JBrowse link 3 37,950,846 38,211,478 RGD:1624291
RGD:1600115
G Ccdc66 coiled-coil domain containing 66 JBrowse link 16 3,107,119 3,139,188 RGD:1624291
G Cngb1 cyclic nucleotide gated channel beta 1 JBrowse link 19 10,142,440 10,206,618 RGD:1624291
RGD:1600115
G Gja10 gap junction protein, alpha 10 JBrowse link 5 47,819,484 47,841,138 RGD:1624291
RGD:1600115
G Gnat1 G protein subunit alpha transducin 1 JBrowse link 8 116,433,302 116,438,038 RGD:1624291
RGD:1600115
G Gnat2 G protein subunit alpha transducin 2 JBrowse link 2 210,880,754 210,890,765 RGD:1624291
RGD:1600115
G Grm6 glutamate metabotropic receptor 6 JBrowse link 10 36,345,503 36,363,416 RGD:1624291
RGD:1600115
G Gucy2f guanylate cyclase 2F JBrowse link X 113,372,240 113,474,210 RGD:1624291
RGD:1600115
G Rbp4 retinol binding protein 4 JBrowse link 1 256,806,476 256,813,678 RGD:1624291
G Reep6 receptor accessory protein 6 JBrowse link 7 12,240,059 12,246,814 RGD:1624291
RGD:1600115
G Rgs9bp regulator of G protein signaling 9 binding protein JBrowse link 1 91,855,270 91,855,983 RGD:1624291
RGD:1600115
G Rpe65 retinoid isomerohydrolase RPE65 JBrowse link 2 266,141,581 266,169,197 RGD:1624291
RGD:1600115
G Rpgrip1 RPGR interacting protein 1 JBrowse link 15 28,521,287 28,575,046 RGD:1624291
G Sema5a semaphorin 5A JBrowse link 2 85,377,318 85,808,970 RGD:1624291
G Sema5b semaphorin 5B JBrowse link 11 68,304,844 68,435,109 RGD:1624291
RGD:1600115
G Tulp1 tubby like protein 1 JBrowse link 20 7,931,673 7,943,601 RGD:1624291
RGD:1600115
detection of mechanical stimulus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ano3 anoctamin 3 JBrowse link 3 101,843,516 102,203,368 RGD:9681745
G Jup junction plakoglobin JBrowse link 10 88,280,517 88,307,451 RGD:1624291
RGD:1600115
G Piezo1 piezo-type mechanosensitive ion channel component 1 JBrowse link 19 55,305,494 55,367,680 RGD:1624291
RGD:13792537
G Piezo2 piezo-type mechanosensitive ion channel component 2 JBrowse link 18 58,353,361 58,728,555 RGD:13792537
G Pkd1 polycystin 1, transient receptor potential channel interacting JBrowse link 10 13,914,057 13,962,008 RGD:1624291
RGD:1600115
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting JBrowse link 14 89,047,949 89,193,579 RGD:13792537
G Pkd1l3 polycystin 1 like 3, transient receptor potential channel interacting JBrowse link 19 41,990,249 42,054,390 RGD:13792537
G Pkd2 polycystin 2, transient receptor potential cation channel JBrowse link 14 6,602,004 6,645,257 RGD:1624291
RGD:13792537
G Pkd2l1 polycystin 2 like 1, transient receptor potential cation channel JBrowse link 1 263,922,201 263,959,318 RGD:13792537
G Pkd2l2 polycystin 2 like 2, transient receptor potential cation channel JBrowse link 18 27,190,661 27,225,488 RGD:13792537
G Pkdrej polycystin family receptor for egg jelly JBrowse link 7 126,695,498 126,701,872 RGD:13792537
detection of mechanical stimulus involved in equilibrioception term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pcdh15 protocadherin related 15 JBrowse link 20 14,952,213 15,334,745 RGD:1624291
G Sox2 SRY box 2 JBrowse link 2 121,165,137 121,167,545 RGD:1624291
detection of mechanical stimulus involved in sensory perception term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asic2 acid sensing ion channel subunit 2 JBrowse link 10 68,247,800 69,347,223 RGD:1624291
RGD:1600115
G Asic3 acid sensing ion channel subunit 3 JBrowse link 4 7,287,868 7,293,295 RGD:1624291
G Fmr1 fragile X mental retardation 1 JBrowse link X 154,684,924 154,722,369 RGD:11570504
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:8549460
G Piezo2 piezo-type mechanosensitive ion channel component 2 JBrowse link 18 58,353,361 58,728,555 RGD:1624291
G Serpine2 serpin family E member 2 JBrowse link 9 85,560,852 85,629,410 RGD:1624291
RGD:1600115
detection of mechanical stimulus involved in sensory perception of pain term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ano1 anoctamin 1 JBrowse link 1 217,754,349 217,902,540 RGD:1624291
G Asic3 acid sensing ion channel subunit 3 JBrowse link 4 7,287,868 7,293,295 RGD:1624291
RGD:1600115
G Bace1 beta-secretase 1 JBrowse link 8 50,140,092 50,162,388 RGD:13782150
G Cacnb3 calcium voltage-gated channel auxiliary subunit beta 3 JBrowse link 7 140,311,120 140,324,902 RGD:13514092
G Cxcl12 C-X-C motif chemokine ligand 12 JBrowse link 4 149,261,044 149,273,891 RGD:12910551
G Cxcr4 C-X-C motif chemokine receptor 4 JBrowse link 13 45,314,952 45,318,856 RGD:12910551
RGD:13463594
G Fyn FYN proto-oncogene, Src family tyrosine kinase JBrowse link 20 44,436,354 44,630,316 RGD:1624291
RGD:1600115
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A JBrowse link 10 5,707,806 6,123,568 RGD:1624291
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B JBrowse link 4 169,541,620 170,000,216 RGD:1624291
G Grin2d glutamate ionotropic receptor NMDA type subunit 2D JBrowse link 1 101,819,068 101,859,146 RGD:1624291
G Grm8 glutamate metabotropic receptor 8 JBrowse link 4 54,474,344 55,409,526 RGD:6771181
G Htr2a 5-hydroxytryptamine receptor 2A JBrowse link 15 56,666,152 56,732,469 RGD:7257680
G Htr7 5-hydroxytryptamine receptor 7 JBrowse link 1 254,547,964 254,671,811 RGD:6482179
G Il18 interleukin 18 JBrowse link 8 55,009,666 55,016,286 RGD:2315887
G Itga2 integrin subunit alpha 2 JBrowse link 2 46,996,904 47,097,011 RGD:2303705
G Kcna1 potassium voltage-gated channel subfamily A member 1 JBrowse link 4 159,190,781 159,192,526 RGD:1624291
RGD:1600115
G Mir15b microRNA 15b JBrowse link 2 165,605,923 165,606,020 RGD:13782150
G Mir338 microRNA 338 JBrowse link 10 109,195,251 109,195,316 RGD:13463594
G Ntrk1 neurotrophic receptor tyrosine kinase 1 JBrowse link 2 187,143,568 187,160,373 RGD:5684352
G Pawr pro-apoptotic WT1 regulator JBrowse link 7 51,273,764 51,353,700 RGD:9835398
G Phf24 PHD finger protein 24 JBrowse link 5 58,359,744 58,387,446 RGD:1624291
RGD:1600115
G Scn1a sodium voltage-gated channel alpha subunit 1 JBrowse link 3 52,388,811 52,533,365 RGD:1600115
RGD:1624291
G Tlr4 toll-like receptor 4 JBrowse link 5 82,587,424 82,601,056 RGD:12910551
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:7387300
G Trpa1 transient receptor potential cation channel, subfamily A, member 1 JBrowse link 5 3,783,247 3,836,485 RGD:1624291
RGD:1600115
detection of mechanical stimulus involved in sensory perception of sound term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adgrv1 adhesion G protein-coupled receptor V1 JBrowse link 2 8,926,843 9,504,455 RGD:1624291
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 JBrowse link 4 145,704,779 145,948,997 RGD:1624291
G Chrna10 cholinergic receptor nicotinic alpha 10 subunit JBrowse link 1 167,206,722 167,212,199 RGD:1624291
RGD:1600115
G Chrna9 cholinergic receptor nicotinic alpha 9 subunit JBrowse link 14 43,883,450 43,890,171 RGD:1624291
RGD:1600115
G Col11a1 collagen type XI alpha 1 chain JBrowse link 2 216,863,423 217,056,523 RGD:1624291
RGD:1600115
G Hpn hepsin JBrowse link 1 89,534,112 89,549,575 RGD:1600115
RGD:1624291
G Kit KIT proto-oncogene receptor tyrosine kinase JBrowse link 14 35,072,131 35,149,638 RGD:1624291
RGD:1600115
G Lhfpl5 LHFPL tetraspan subfamily member 5 JBrowse link 20 5,815,837 5,826,137 RGD:1624291
RGD:1600115
G Mkks McKusick-Kaufman syndrome JBrowse link 3 129,866,542 129,885,213 RGD:1624291
RGD:1600115
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:1624291
G Pcdh15 protocadherin related 15 JBrowse link 20 14,952,213 15,334,745 RGD:1624291
G Pdzd7 PDZ domain containing 7 JBrowse link 1 264,776,393 264,796,206 RGD:1624291
RGD:1600115
G Ptprq protein tyrosine phosphatase, receptor type, Q JBrowse link 7 49,763,657 50,034,932 RGD:1624291
RGD:1600115
G Rest RE1-silencing transcription factor JBrowse link 14 33,131,985 33,152,019 RGD:1600115
G Slc12a2 solute carrier family 12 member 2 JBrowse link 18 52,917,124 52,985,281 RGD:1624291
G Sox2 SRY box 2 JBrowse link 2 121,165,137 121,167,545 RGD:1624291
G Strc stereocilin JBrowse link 3 113,324,403 113,343,513 RGD:1624291
RGD:1600115
G Tmc1 transmembrane channel-like 1 JBrowse link 1 238,336,919 238,525,792 RGD:1624291
RGD:13792537
G Tmc2 transmembrane channel-like 2 JBrowse link 3 122,720,769 122,790,100 RGD:1624291
RGD:13792537
G Whrn whirlin JBrowse link 5 79,235,541 79,317,206 RGD:1600115
RGD:1624291
detection of mechanical stimulus involved in sensory perception of touch term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kcna1 potassium voltage-gated channel subfamily A member 1 JBrowse link 4 159,190,781 159,192,526 RGD:1624291
RGD:1600115
G Kcnk4 potassium two pore domain channel subfamily K member 4 JBrowse link 1 222,182,997 222,192,139 RGD:1624291
RGD:1600115
detection of muscle stretch term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cav3 caveolin 3 JBrowse link 4 144,382,945 144,398,919 RGD:1624291
RGD:1600115
G Csrp3 cysteine and glycine rich protein 3 JBrowse link 1 104,147,205 104,166,389 RGD:1624291
RGD:1600115
G Tcap titin-cap JBrowse link 10 86,337,705 86,338,414 RGD:1624291
G Ttn titin JBrowse link 3 63,565,160 63,837,815 RGD:1624291
detection of temperature stimulus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ano3 anoctamin 3 JBrowse link 3 101,843,516 102,203,368 RGD:9681745
G Drgx dorsal root ganglia homeobox JBrowse link 16 8,823,872 8,853,430 RGD:1624291
RGD:1600115
G Ngfr nerve growth factor receptor JBrowse link 10 83,389,828 83,408,061 RGD:1624291
G Trpm3 transient receptor potential cation channel, subfamily M, member 3 JBrowse link 1 239,741,572 240,757,583 RGD:1600115
G Trpm8 transient receptor potential cation channel, subfamily M, member 8 JBrowse link 9 95,393,370 95,484,528 RGD:1600115
detection of temperature stimulus involved in sensory perception term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asic3 acid sensing ion channel subunit 3 JBrowse link 4 7,287,868 7,293,295 RGD:1624291
detection of temperature stimulus involved in sensory perception of pain term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adora1 adenosine A1 receptor JBrowse link 13 51,042,111 51,076,913 RGD:5129094
G Ano1 anoctamin 1 JBrowse link 1 217,754,349 217,902,540 RGD:1624291
G Arrb2 arrestin, beta 2 JBrowse link 10 57,040,252 57,048,045 RGD:5509871
G Asic3 acid sensing ion channel subunit 3 JBrowse link 4 7,287,868 7,293,295 RGD:1624291
RGD:1600115
G Calca calcitonin-related polypeptide alpha JBrowse link 1 184,184,018 184,188,922 RGD:1624291
RGD:1600115
G Cxcl12 C-X-C motif chemokine ligand 12 JBrowse link 4 149,261,044 149,273,891 RGD:12910551
G Cxcr4 C-X-C motif chemokine receptor 4 JBrowse link 13 45,314,952 45,318,856 RGD:12910551
G Ephb1 Eph receptor B1 JBrowse link 8 110,376,954 110,813,193 RGD:1624291
RGD:1600115
G Htr2a 5-hydroxytryptamine receptor 2A JBrowse link 15 56,666,152 56,732,469 RGD:7257680
G Lxn latexin JBrowse link 2 164,628,565 164,634,434 RGD:1624291
RGD:1600115
G Mmp24 matrix metallopeptidase 24 JBrowse link 3 151,307,309 151,355,401 RGD:1600115
RGD:1624291
G Nr2f6 nuclear receptor subfamily 2, group F, member 6 JBrowse link 16 19,769,968 19,777,414 RGD:1624291
RGD:1600115
G Ntrk1 neurotrophic receptor tyrosine kinase 1 JBrowse link 2 187,143,568 187,160,373 RGD:5684352
G Ntsr1 neurotensin receptor 1 JBrowse link 3 175,982,313 176,046,345 RGD:9743979
G Pawr pro-apoptotic WT1 regulator JBrowse link 7 51,273,764 51,353,700 RGD:9835416
G Prdm12 PR/SET domain 12 JBrowse link 3 10,181,104 10,199,185 RGD:1624291
RGD:1600115
G Tac4 tachykinin 4 JBrowse link 10 83,081,168 83,089,487 RGD:1624291
G Tlr4 toll-like receptor 4 JBrowse link 5 82,587,424 82,601,056 RGD:12910551
G Trpv1 transient receptor potential cation channel, subfamily V, member 1 JBrowse link 10 59,799,123 59,824,208 RGD:1624291
RGD:1600115
detection of temperature stimulus involved in thermoception term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trpv1 transient receptor potential cation channel, subfamily V, member 1 JBrowse link 10 59,799,123 59,824,208 RGD:1624291
RGD:1600115
detection of UV term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fech ferrochelatase JBrowse link 18 59,941,992 59,975,192 RGD:1624291
detection of visible light term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gpr88 G-protein coupled receptor 88 JBrowse link 2 219,258,346 219,263,819 RGD:1600115
G Irx6 iroquois homeobox 6 JBrowse link 19 15,726,633 15,733,442 RGD:1624291
G Opn1mw opsin 1, medium wave sensitive JBrowse link X 156,569,683 156,589,907 RGD:1600115
G Opn1sw opsin 1, short wave sensitive JBrowse link 4 56,653,840 56,656,980 RGD:1600115
G Opn3 opsin 3 JBrowse link 13 93,716,481 93,746,994 RGD:1600115
G Opn4 opsin 4 JBrowse link 16 10,943,353 10,966,602 RGD:1600115
G Opn5 opsin 5 JBrowse link 9 21,045,457 21,092,517 RGD:1600115
G Rgr retinal G protein coupled receptor JBrowse link 16 14,286,323 14,300,972 RGD:1600115
G Rrh retinal pigment epithelium derived rhodopsin homolog JBrowse link 2 235,237,422 235,250,474 RGD:1600115
negative regulation of detection of mechanical stimulus involved in sensory perception of touch term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cacnb3 calcium voltage-gated channel auxiliary subunit beta 3 JBrowse link 7 140,311,120 140,324,902 RGD:13514092
phototransduction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arrb1 arrestin, beta 1 JBrowse link 1 164,502,099 164,573,947 RGD:1624291
RGD:1600115
G Asic2 acid sensing ion channel subunit 2 JBrowse link 10 68,247,800 69,347,223 RGD:1624291
RGD:1600115
G Cabp4 calcium binding protein 4 JBrowse link 1 219,383,452 219,388,009 RGD:1624291
RGD:1600115
G Cngb1 cyclic nucleotide gated channel beta 1 JBrowse link 19 10,142,440 10,206,618 RGD:1624291
G Gnat1 G protein subunit alpha transducin 1 JBrowse link 8 116,433,302 116,438,038 RGD:1624291
G Gnat2 G protein subunit alpha transducin 2 JBrowse link 2 210,880,754 210,890,765 RGD:1624291
RGD:1600115
G Gngt1 G protein subunit gamma transducin 1 JBrowse link 4 28,972,339 28,975,419 RGD:1624291
RGD:1600115
G Gpr88 G-protein coupled receptor 88 JBrowse link 2 219,258,346 219,263,819 RGD:13792537
G Guca1a guanylate cyclase activator 1A JBrowse link 9 15,609,804 15,620,030 RGD:1624291
RGD:1600115
G Guca1b guanylate cyclase activator 1B JBrowse link 9 15,621,083 15,629,017 RGD:1624291
RGD:1600115
G Opn1mw opsin 1, medium wave sensitive JBrowse link X 156,569,683 156,589,907 RGD:13792537
G Opn1sw opsin 1, short wave sensitive JBrowse link 4 56,653,840 56,656,980 RGD:1600115
RGD:13792537
G Opn3 opsin 3 JBrowse link 13 93,716,481 93,746,994 RGD:13792537
G Opn4 opsin 4 JBrowse link 16 10,943,353 10,966,602 RGD:633348
RGD:13792537
RGD:1624291
G Opn5 opsin 5 JBrowse link 9 21,045,457 21,092,517 RGD:13792537
G Plcb4 phospholipase C, beta 4 JBrowse link 3 128,601,163 128,971,720 RGD:633574
G Rcvrn recoverin JBrowse link 10 54,246,250 54,253,996 RGD:1624291
RGD:1600115
G Rgr retinal G protein coupled receptor JBrowse link 16 14,286,323 14,300,972 RGD:13792537
G Rho rhodopsin JBrowse link 4 147,832,136 147,837,298 RGD:1624291
RGD:13792537
RGD:1600115
G Rrh retinal pigment epithelium derived rhodopsin homolog JBrowse link 2 235,237,422 235,250,474 RGD:13792537
phototransduction, visible light term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 JBrowse link 10 58,599,690 58,631,194 RGD:1624291
RGD:1600115
G Chrm1 cholinergic receptor, muscarinic 1 JBrowse link 1 224,869,087 224,885,101 RGD:1624291
G Gnat1 G protein subunit alpha transducin 1 JBrowse link 8 116,433,302 116,438,038 RGD:1624291
G Pde6c phosphodiesterase 6C JBrowse link 1 256,822,099 256,885,879 RGD:1624291
RGD:1600115
red, far-red light phototransduction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rho rhodopsin JBrowse link 4 147,832,136 147,837,298 RGD:6893558
regulation of rhodopsin mediated signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 JBrowse link 10 58,599,690 58,631,194 RGD:1624291
RGD:1600115
G Grk1 G protein-coupled receptor kinase 1 JBrowse link 16 81,153,489 81,165,442 RGD:1600115
RGD:1624291
rhodopsin mediated signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gnat1 G protein subunit alpha transducin 1 JBrowse link 8 116,433,302 116,438,038 RGD:1599009
G Grk1 G protein-coupled receptor kinase 1 JBrowse link 16 81,153,489 81,165,442 RGD:729748
G Opn4 opsin 4 JBrowse link 16 10,943,353 10,966,602 RGD:1624291
G Pcp2 Purkinje cell protein 2 JBrowse link 12 2,172,378 2,174,674 RGD:1624291
G Rho rhodopsin JBrowse link 4 147,832,136 147,837,298 RGD:6893595

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17895
    response to stimulus 9792
      detection of stimulus 1651
        detection of abiotic stimulus 128
          detection of electrical stimulus + 0
          detection of gravity + 2
          detection of humidity + 0
          detection of light stimulus + 47
          detection of mechanical stimulus + 65
          detection of osmotic stimulus 0
          detection of temperature stimulus + 24
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.