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ONTOLOGY REPORT - ANNOTATIONS


Term:detection of light stimulus
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Accession:GO:0009583 term browser browse the term
Definition:The series of events in which a light stimulus (in the form of photons) is received and converted into a molecular signal.
Synonyms:exact_synonym: detection of light
 related_synonym: perception of light


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detection of light stimulus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde6b phosphodiesterase 6B ISO MGI:1856373 (MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:2155023 NCBI chr14:2,328,690...2,371,913
Ensembl chr14:2,328,750...2,371,883
JBrowse link
G Rho rhodopsin ISO MGI:2181812 (MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:2155023 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
absorption of visible light term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
adaptation of rhodopsin mediated signaling term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh11 retinol dehydrogenase 11 ISO MGI:3586379 (MGI:3584215|PMID:15790565) RGD PMID:15790565 MGI:3584215 NCBI chr 6:102,356,498...102,372,618
Ensembl chr 6:102,356,492...102,372,611
JBrowse link
G Rs1 retinoschisin 1 ISO MGI:3056058 (MGI:3055638|PMID:15326152) RGD PMID:15326152 MGI:3055638 NCBI chr  X:35,749,957...35,777,243
Ensembl chr  X:35,749,957...35,777,243
JBrowse link
detection of light stimulus involved in visual perception term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp8a2 ATPase phospholipid transporting 8A2 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr15:39,955,689...40,488,737
Ensembl chr15:40,000,322...40,428,800
JBrowse link
G Best1 bestrophin 1 ISO MGI:3795281 (MGI:3795256|PMID:16636205) RGD PMID:16636205 MGI:3795256 NCBI chr 1:226,033,146...226,049,893
Ensembl chr 1:226,030,875...226,049,929
JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F ISO (PMID:7571473) RGD PMID:7571473 NCBI chr  X:15,712,709...15,741,135
Ensembl chr  X:15,712,713...15,741,103
JBrowse link
G Cacna2d4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 ISO (PMID:17033974) RGD PMID:17033974 NCBI chr 4:151,298,548...151,409,263
Ensembl chr 4:151,298,548...151,409,263
JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 ISO MGI:1856936 (MGI:3795256|PMID:16636205) RGD PMID:16636205 MGI:3795256 NCBI chr 3:37,950,846...38,211,478
Ensembl chr 3:37,955,069...38,090,526
JBrowse link
G Ccdc66 coiled-coil domain containing 66 ISO (MGI:5141557|PMID:21680557) RGD PMID:21680557 MGI:5141557 NCBI chr16:3,107,119...3,139,188
Ensembl chr16:3,110,239...3,139,177
JBrowse link
G Cep250 centrosomal protein 250 ISO (MGI:6317055|PMID:30998843) RGD PMID:30998843 MGI:6317055 NCBI chr 3:151,508,366...151,544,631
Ensembl chr 3:151,508,361...151,544,674
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO (PMID:15557452) RGD PMID:15557452 NCBI chr19:10,142,440...10,206,618
Ensembl chr19:10,142,496...10,206,681
JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:5315300|PMID:22447858) RGD PMID:22447858 MGI:5315300 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Gja10 gap junction protein, alpha 10 ISO MGI:3043946 (MGI:3654563|PMID:16820008) RGD PMID:16820008 MGI:3654563 NCBI chr 5:47,819,484...47,841,138
Ensembl chr 5:47,835,066...47,836,586
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (PMID:17584859)
MGI:2152779 (MGI:3772743|PMID:18171936)
RGD PMID:17584859, PMID:18171936 MGI:3772743 NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO (PMID:12077706)
MGI:3588845 (MGI:3714271|PMID:17065522)
RGD PMID:12077706, PMID:17065522 MGI:3714271 NCBI chr 2:210,880,754...210,890,765
Ensembl chr 2:210,880,777...210,889,881
JBrowse link
G Grm6 glutamate metabotropic receptor 6 ISO
ISS
(PMID:17405131)
GO_REF:0000024
RGD
UniProt
PMID:17405131 GO_REF:0000024 NCBI chr10:36,345,503...36,363,416
Ensembl chr10:36,345,939...36,360,665
JBrowse link
G Gucy2f guanylate cyclase 2F ISO (MGI:3708225|PMID:17255100) RGD PMID:17255100 MGI:3708225 NCBI chr  X:113,372,240...113,474,210
Ensembl chr  X:113,372,240...113,474,164
JBrowse link
G Prph2 peripherin 2 ISO MGI:1856523|MGI:6367783|MGI:6367794|MGI:97998 (MGI:5905515|PMID:28053051), (MGI:6305433|PMID:26420485) RGD PMID:26420485, PMID:28053051 MGI:5905515, MGI:6305433 NCBI chr 9:16,085,933...16,386,176 JBrowse link
G Rbp4 retinol binding protein 4 ISO MGI:2445721 (MGI:3687059|PMID:12484775) RGD PMID:12484775 MGI:3687059 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711
JBrowse link
G Reep6 receptor accessory protein 6 ISO
ISS
(PMID:27889058)
GO_REF:0000024
RGD
UniProt
PMID:27889058 GO_REF:0000024 NCBI chr 7:12,240,059...12,246,814
Ensembl chr 7:12,240,060...12,246,729
JBrowse link
G Rgs9bp regulator of G protein signaling 9 binding protein ISO MGI:3028628 (MGI:3027216|PMID:14625292) RGD PMID:14625292 MGI:3027216 NCBI chr 1:91,855,270...91,855,983
Ensembl chr 1:91,855,270...91,855,983
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO MGI:102791 (MGI:5905515|PMID:28053051) RGD PMID:28053051 MGI:5905515 NCBI chr 1:225,126,732...225,128,740
Ensembl chr 1:225,126,734...225,128,740
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO (PMID:15557452) RGD PMID:15557452 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197
JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (PMID:21521437) RGD PMID:21521437 NCBI chr15:28,521,287...28,575,046
Ensembl chr15:28,522,737...28,574,737
JBrowse link
G Sema5a semaphorin 5A ISO MGI:107555 (MGI:5140622|PMID:21835343) RGD PMID:21835343 MGI:5140622 NCBI chr 2:85,377,318...85,808,970
Ensembl chr 2:85,377,318...85,808,970
JBrowse link
G Sema5b semaphorin 5B ISO MGI:107556 (MGI:5140622|PMID:21835343) RGD PMID:21835343 MGI:5140622 NCBI chr11:68,304,844...68,435,109
Ensembl chr11:68,306,659...68,349,238
JBrowse link
G Tulp1 TUB like protein 1 ISO (PMID:15557452) RGD PMID:15557452 NCBI chr20:7,931,673...7,943,601
Ensembl chr20:7,931,674...7,943,575
JBrowse link
detection of UV term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fech ferrochelatase ISO MGI:2384729 (MGI:2384247|PMID:12149233) RGD PMID:12149233 MGI:2384247 NCBI chr18:59,941,992...59,975,192
Ensembl chr18:59,941,992...59,975,192
JBrowse link
detection of visible light term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr88 G-protein coupled receptor 88 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:219,258,346...219,263,819
Ensembl chr 2:219,258,347...219,262,901
JBrowse link
G Irx6 iroquois homeobox 6 ISO MGI:5448232 (MGI:5447580|PMID:23172916) RGD PMID:23172916 MGI:5447580 NCBI chr19:15,726,633...15,733,442
Ensembl chr19:15,727,514...15,733,412
JBrowse link
G Opn1mw opsin 1, medium wave sensitive IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:156,569,683...156,589,907
Ensembl chr  X:156,569,683...156,589,907
JBrowse link
G Opn1sw opsin 1, short wave sensitive IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:56,653,840...56,656,980
Ensembl chr 4:56,653,844...56,656,980
JBrowse link
G Opn3 opsin 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:93,716,481...93,746,994
Ensembl chr13:93,716,481...93,746,994
JBrowse link
G Opn5 opsin 5 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:21,045,457...21,092,517
Ensembl chr 9:21,045,457...21,093,172
JBrowse link
G Rgr retinal G protein coupled receptor IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:14,286,323...14,300,972
Ensembl chr16:14,286,323...14,300,951
JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:235,237,422...235,250,474
Ensembl chr 2:235,237,414...235,249,575
JBrowse link
phototransduction term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arrb1 arrestin, beta 1 ISO MGI:2388373 (MGI:3772638|PMID:11853756) RGD PMID:11853756 MGI:3772638 NCBI chr 1:164,502,099...164,573,947
Ensembl chr 1:164,502,389...164,593,139
JBrowse link
G Asic2 acid sensing ion channel subunit 2 IEA
ISO
GO_REF:0000107
MGI:3043849 (MGI:3042539|PMID:14762118)
Ensembl
RGD
PMID:14762118 GO_REF:0000107, MGI:3042539 NCBI chr10:68,247,800...69,347,223
Ensembl chr10:68,248,655...68,517,564
JBrowse link
G Cabp4 calcium binding protein 4 ISO MGI:3056615 (MGI:3609280|PMID:16249514) RGD PMID:16249514 MGI:3609280 NCBI chr 1:219,383,452...219,388,009
Ensembl chr 1:219,383,452...219,388,009
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO MGI:3527896 (MGI:3527312|PMID:15634774) RGD PMID:15634774 MGI:3527312 NCBI chr19:10,142,440...10,206,618
Ensembl chr19:10,142,496...10,206,681
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO MGI:2152779 (MGI:1928441|PMID:11095744), (MGI:3609280|PMID:16249514), (MGI:3615719|PMID:15073279), (MGI:3757777|PMID:17881533), (MGI:3772638|PMID:11853756), (MGI:3778702|PMID:18367617) RGD PMID:11095744, PMID:11853756, PMID:15073279, PMID:16249514, PMID:17881533, PMID:18367617 MGI:1928441, MGI:3609280, MGI:3615719, MGI:3757777, MGI:3772638, MGI:3778702 NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO MGI:3588845 (MGI:3761397|PMID:17408617), (MGI:3772743|PMID:18171936) RGD PMID:17408617, PMID:18171936 MGI:3761397, MGI:3772743 NCBI chr 2:210,880,754...210,890,765
Ensembl chr 2:210,880,777...210,889,881
JBrowse link
G Gngt1 G protein subunit gamma transducin 1 ISO MGI:3783323 (MGI:3778702|PMID:18367617) RGD PMID:18367617 MGI:3778702 NCBI chr 4:28,972,339...28,975,419
Ensembl chr 4:28,972,434...28,975,419
JBrowse link
G Gpr88 G-protein coupled receptor 88 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:219,258,346...219,263,819
Ensembl chr 2:219,258,347...219,262,901
JBrowse link
G Guca1a guanylate cyclase activator 1A ISO MGI:2664159 (MGI:2664110|PMID:11493703), (MGI:3584028|PMID:15173221) RGD PMID:11493703, PMID:15173221 MGI:2664110, MGI:3584028 NCBI chr 9:15,609,804...15,620,030
Ensembl chr 9:15,609,804...15,620,029
JBrowse link
G Guca1b guanylate cyclase activator 1B ISO MGI:2664160 (MGI:2664110|PMID:11493703), (MGI:3584028|PMID:15173221) RGD PMID:11493703, PMID:15173221 MGI:2664110, MGI:3584028 NCBI chr 9:15,621,083...15,629,017
Ensembl chr 9:15,621,083...15,629,017
JBrowse link
G Opn1mw opsin 1, medium wave sensitive IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:156,569,683...156,589,907
Ensembl chr  X:156,569,683...156,589,907
JBrowse link
G Opn1sw opsin 1, short wave sensitive IEA
IBA
GO_REF:0000043
PMID:21873635
UniProt PMID:21873635 GO_REF:0000043, RGD:13792537 NCBI chr 4:56,653,840...56,656,980
Ensembl chr 4:56,653,844...56,656,980
JBrowse link
G Opn3 opsin 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:93,716,481...93,746,994
Ensembl chr13:93,716,481...93,746,994
JBrowse link
G Opn4 opsin 4 IDA
ISO
IBA
(MGI:2667269|PMID:12808468)
PMID:21873635
(PMID:15674244)
RGD PMID:12808468, PMID:15674244, PMID:11834834, PMID:21873635 MGI:2667269, RGD:633348, RGD:13792537 NCBI chr16:10,943,353...10,966,602
Ensembl chr16:10,943,341...10,952,549
JBrowse link
G Opn5 opsin 5 IBA
ISO
PMID:21873635
(MGI:6359287|PMID:30936473)
RGD PMID:30936473, PMID:21873635 MGI:6359287, RGD:13792537 NCBI chr 9:21,045,457...21,092,517
Ensembl chr 9:21,045,457...21,093,172
JBrowse link
G Plcb4 phospholipase C, beta 4 NAS RGD PMID:7688223 RGD:633574 NCBI chr 3:128,601,163...128,971,720
Ensembl chr 3:128,756,799...128,971,746
JBrowse link
G Rcvrn recoverin ISO MGI:3584102 (MGI:3584028|PMID:15173221) RGD PMID:15173221 MGI:3584028 NCBI chr10:54,246,250...54,253,996
Ensembl chr10:54,246,250...54,253,996
JBrowse link
G Rgr retinal G protein coupled receptor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:14,286,323...14,300,972
Ensembl chr16:14,286,323...14,300,951
JBrowse link
G Rho rhodopsin IEA
ISO
IBA
GO_REF:0000107
MGI:2181812 (MGI:3655007|PMID:16723493)
PMID:21873635
Ensembl
RGD
PMID:16723493, PMID:21873635 GO_REF:0000107, MGI:3655007, RGD:13792537 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:235,237,422...235,250,474
Ensembl chr 2:235,237,414...235,249,575
JBrowse link
phototransduction, UV term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Opn5 opsin 5 ISO (PMID:22043319)
(MGI:6230806|PMID:22043319)
RGD PMID:22043319 MGI:6230806 NCBI chr 9:21,045,457...21,092,517
Ensembl chr 9:21,045,457...21,093,172
JBrowse link
phototransduction, visible light term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 ISO MGI:3054784 (MGI:3054118|PMID:15365173) RGD PMID:15365173 MGI:3054118 NCBI chr10:58,599,690...58,631,194
Ensembl chr10:58,599,856...58,608,907
JBrowse link
G Chrm1 cholinergic receptor, muscarinic 1 ISO (PMID:12196552) RGD PMID:12196552 NCBI chr 1:224,869,087...224,885,101
Ensembl chr 1:224,882,439...224,884,205
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (PMID:17584859) RGD PMID:17584859 NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
JBrowse link
G Pde6c phosphodiesterase 6C ISO MGI:2657247 (MGI:3655007|PMID:16723493) RGD PMID:16723493 MGI:3655007 NCBI chr 1:256,822,099...256,885,879
Ensembl chr 1:256,822,334...256,877,810
JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin IDA RGD PMID:2525480 RGD:6893558 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
regulation of rhodopsin mediated signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 ISO MGI:3054784|MGI:3054793 (MGI:3054118|PMID:15365173), (MGI:3054134|PMID:15365178) RGD PMID:15365173, PMID:15365178 MGI:3054118, MGI:3054134 NCBI chr10:58,599,690...58,631,194
Ensembl chr10:58,599,856...58,608,907
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:15946941)
Ensembl
UniProt
RGD
PMID:15946941 GO_REF:0000024, GO_REF:0000107 NCBI chr16:81,153,489...81,165,442
Ensembl chr16:81,153,489...81,165,442
JBrowse link
rhodopsin mediated signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 IMP RGD PMID:11931744 RGD:1599009 NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 TAS RGD PMID:9147475 RGD:729748 NCBI chr16:81,153,489...81,165,442
Ensembl chr16:81,153,489...81,165,442
JBrowse link
G Opn4 opsin 4 ISO (MGI:4438311|PMID:19793992) RGD PMID:19793992 MGI:4438311 NCBI chr16:10,943,353...10,966,602
Ensembl chr16:10,943,341...10,952,549
JBrowse link
G Pcp2 Purkinje cell protein 2 ISO MGI:3579782 (MGI:3817370|PMID:18768681) RGD PMID:18768681 MGI:3817370 NCBI chr12:2,172,378...2,174,674
Ensembl chr12:2,172,378...2,174,131
JBrowse link
G Rho rhodopsin IDA RGD PMID:8814134 RGD:6893595 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    response to stimulus 10580
      detection of stimulus 1738
        detection of external stimulus 138
          detection of light stimulus 51
            detection of UV + 2
            detection of light stimulus involved in sensory perception + 24
            detection of visible light + 41
            light absorption + 1
            phototransduction + 27
Path 2
Term Annotations click to browse term
  biological_process 20020
    response to stimulus 10580
      response to abiotic stimulus 1514
        response to radiation 535
          response to light stimulus 347
            detection of light stimulus 51
              detection of UV + 2
              detection of light stimulus involved in sensory perception + 24
              detection of visible light + 41
              light absorption + 1
              phototransduction + 27
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.