ONTOLOGY REPORT - ANNOTATIONS


Term:detection of light stimulus
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Accession:GO:0009583 term browser browse the term
Definition:The series of events in which a light stimulus (in the form of photons) is received and converted into a molecular signal.
Synonyms:exact_synonym: detection of light
 related_synonym: perception of light
 xref: MIPS_funcat:34.11.01;   MIPS_funcat:36.20.35.11


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detection of light stimulus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pde6b phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide JBrowse link 5 108,388,373 108,431,743 RGD:2290270
G Rho rhodopsin JBrowse link 6 115,926,754 115,940,036 RGD:2290270
adaptation of rhodopsin mediated signaling term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rdh11 retinol dehydrogenase 11 JBrowse link 12 79,175,551 79,191,819 RGD:2290270
G Rs1 retinoschisis (X-linked, juvenile) 1 (human) JBrowse link X 160,768,013 160,799,663 RGD:2290270
detection of light stimulus involved in visual perception term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp8a2 ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 JBrowse link 14 59,647,320 60,177,987 RGD:2290270
G Best1 bestrophin 1 JBrowse link 19 9,985,172 10,001,633 RGD:2290270
G Cacna1f calcium channel, voltage-dependent, alpha 1F subunit JBrowse link X 7,607,070 7,635,196 RGD:2290270
G Cacna2d4 calcium channel, voltage-dependent, alpha 2/delta subunit 4 JBrowse link 6 119,236,474 119,352,407 RGD:2290270
G Cacnb4 calcium channel, voltage-dependent, beta 4 subunit JBrowse link 2 52,428,320 52,676,609 RGD:2290270
G Ccdc66 coiled-coil domain containing 66 JBrowse link 14 27,480,911 27,508,506 RGD:2290270
G Gja10 gap junction protein, alpha 10 JBrowse link 4 32,600,865 32,602,382 RGD:2290270
G Gnat1 guanine nucleotide binding protein, alpha transducing 1 JBrowse link 9 107,674,474 107,679,592 RGD:2290270
G Gnat2 guanine nucleotide binding protein, alpha transducing 2 JBrowse link 3 108,086,804 108,101,432 RGD:2290270
G Grm6 glutamate receptor, metabotropic 6 JBrowse link 11 50,850,010 50,866,208 RGD:2290270
G Gucy2f guanylate cyclase 2f JBrowse link X 142,079,289 142,197,276 RGD:2290270
G Pcare photoreceptor cilium actin regulator JBrowse link 17 71,743,555 71,752,885 RGD:2290270
G Prcd photoreceptor disc component JBrowse link 11 116,653,889 116,668,389 RGD:2290270
G Rbp4 retinol binding protein 4, plasma JBrowse link 19 38,116,620 38,125,321 RGD:2290270
G Reep6 receptor accessory protein 6 JBrowse link 10 80,330,003 80,336,441 RGD:2290270
G Rgs9bp regulator of G-protein signalling 9 binding protein JBrowse link 7 35,578,993 35,585,582 RGD:2290270
G Rpe65 retinal pigment epithelium 65 JBrowse link 3 159,599,075 159,625,307 RGD:2290270
G Sema5a sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A JBrowse link 15 32,244,742 32,696,341 RGD:2290270
G Sema5b sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B JBrowse link 16 35,541,154 35,664,261 RGD:2290270
G Tulp1 tubby like protein 1 JBrowse link 17 28,351,515 28,365,143 RGD:2290270
detection of UV term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fech ferrochelatase JBrowse link 18 64,456,542 64,489,097 RGD:2290270
detection of visible light term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Irx6 Iroquois homeobox 6 JBrowse link 8 92,674,289 92,680,956 RGD:2290270
phototransduction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arrb1 arrestin, beta 1 JBrowse link 7 99,535,486 99,606,772 RGD:2290270
G Asic2 acid-sensing (proton-gated) ion channel 2 JBrowse link 11 80,880,163 81,968,396 RGD:2290270
G Cabp4 calcium binding protein 4 JBrowse link 19 4,135,423 4,139,723 RGD:2290270
G Cds2 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 JBrowse link 2 132,262,624 132,312,050 RGD:2290270
G Cngb1 cyclic nucleotide gated channel beta 1 JBrowse link 8 95,239,043 95,306,585 RGD:2290270
G Gnat1 guanine nucleotide binding protein, alpha transducing 1 JBrowse link 9 107,674,474 107,679,592 RGD:2290270
G Gnat2 guanine nucleotide binding protein, alpha transducing 2 JBrowse link 3 108,086,804 108,101,432 RGD:2290270
G Gngt1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 JBrowse link 6 3,989,082 3,997,436 RGD:2290270
G Gpr52 G protein-coupled receptor 52 JBrowse link 1 160,574,725 160,580,799 RGD:2290270
G Gpr88 G-protein coupled receptor 88 JBrowse link 3 116,249,654 116,253,498 RGD:2290270
G Guca1a guanylate cyclase activator 1a (retina) JBrowse link 17 47,394,557 47,413,514 RGD:2290270
G Guca1b guanylate cyclase activator 1B JBrowse link 17 47,384,694 47,392,967 RGD:2290270
G Opn1mw opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan) JBrowse link X 74,127,466 74,150,756 RGD:2290270
G Opn1sw opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan) JBrowse link 6 29,376,671 29,380,513 RGD:2290270
G Opn3 opsin 3 JBrowse link 1 175,662,421 175,692,902 RGD:2290270
G Opn4 opsin 4 (melanopsin) JBrowse link 14 34,590,618 34,600,142 RGD:2290270
G Opn5 opsin 5 JBrowse link 17 42,556,779 42,611,430 RGD:2290270
G Pde6d phosphodiesterase 6D, cGMP-specific, rod, delta JBrowse link 1 86,543,013 86,582,808 RGD:2290270
G Rcvrn recoverin JBrowse link 11 67,695,326 67,703,355 RGD:2290270
G Rgr retinal G protein coupled receptor JBrowse link 14 37,034,909 37,049,014 RGD:2290270
G Rho rhodopsin JBrowse link 6 115,926,754 115,940,036 RGD:2290270
G Rrh retinal pigment epithelium derived rhodopsin homolog JBrowse link 3 129,808,575 129,822,505 RGD:2290270
phototransduction, visible light term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 JBrowse link 11 72,028,717 72,038,897 RGD:2290270
G Gnat1 guanine nucleotide binding protein, alpha transducing 1 JBrowse link 9 107,674,474 107,679,592 RGD:2290270
G Gnb1 guanine nucleotide binding protein (G protein), beta 1 JBrowse link 4 155,491,361 155,559,269 RGD:2290270
G Pde6c phosphodiesterase 6C, cGMP specific, cone, alpha prime JBrowse link 19 38,132,781 38,183,955 RGD:2290270
red, far-red light phototransduction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rho rhodopsin JBrowse link 6 115,926,754 115,940,036 RGD:2290270
regulation of rhodopsin mediated signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 JBrowse link 11 72,028,717 72,038,897 RGD:2290270
G Grk1 G protein-coupled receptor kinase 1 JBrowse link 8 13,405,081 13,421,951 RGD:2290270
rhodopsin mediated signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gnat1 guanine nucleotide binding protein, alpha transducing 1 JBrowse link 9 107,674,474 107,679,592 RGD:2290270
G Opn4 opsin 4 (melanopsin) JBrowse link 14 34,590,618 34,600,142 RGD:2290270
G Pcp2 Purkinje cell protein 2 (L7) JBrowse link 8 3,623,369 3,625,545 RGD:2290270
G Rho rhodopsin JBrowse link 6 115,926,754 115,940,036 RGD:2290270

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 22959
    response to stimulus 9451
      detection of stimulus 229
        detection of external stimulus 128
          detection of light stimulus 50
            detection of UV + 1
            detection of light stimulus involved in sensory perception + 20
            detection of visible light + 30
            light absorption + 0
            phototransduction + 29
Path 2
Term Annotations click to browse term
  biological_process 22959
    response to stimulus 9451
      response to abiotic stimulus 1025
        response to radiation 393
          response to light stimulus 288
            detection of light stimulus 50
              detection of UV + 1
              detection of light stimulus involved in sensory perception + 20
              detection of visible light + 30
              light absorption + 0
              phototransduction + 29
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.