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ONTOLOGY REPORT - ANNOTATIONS


Term:photoperiodism
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Accession:GO:0009648 term browser browse the term
Definition:Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
Synonyms:exact_synonym: response to day length;   response to night length;   response to photoperiod
 xref: Wikipedia:Photoperiodism


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photoperiodism term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase IDA RGD PMID:12358739 RGD:628397 NCBI chr10:105,568,091...105,572,407
Ensembl chr10:105,568,091...105,572,403
JBrowse link
G Drd4 dopamine receptor D4 IEP RGD PMID:18321474 RGD:2301031 NCBI chr 1:214,278,296...214,282,818
Ensembl chr 1:214,278,296...214,281,483
JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit IEP RGD PMID:16962714 RGD:2293767 NCBI chr 6:25,598,936...25,616,995
Ensembl chr 6:25,598,936...25,616,995
JBrowse link
G Nmu neuromedin U IEP RGD PMID:17726140 RGD:1642120 NCBI chr14:34,353,683...34,381,968
Ensembl chr14:34,354,503...34,381,828
JBrowse link
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 IEP RGD PMID:21076970 RGD:10448986 NCBI chr10:86,683,875...86,690,815
Ensembl chr10:86,683,875...86,690,815
JBrowse link
entrainment of circadian clock by photoperiod term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase TAS RGD PMID:8770929 RGD:1298540 NCBI chr10:105,568,091...105,572,407
Ensembl chr10:105,568,091...105,572,403
JBrowse link
G Atoh7 atonal bHLH transcription factor 7 ISO (MGI:5699646|PMID:26392540) RGD PMID:26392540 MGI:5699646 NCBI chr20:27,082,961...27,083,410
Ensembl chr20:27,082,961...27,083,410
JBrowse link
G Bhlhe40 basic helix-loop-helix family, member e40 IEA
ISO
GO_REF:0000107
(MGI:3798698|PMID:18411297)
Ensembl
RGD
PMID:18411297 GO_REF:0000107, MGI:3798698 NCBI chr 4:140,703,619...140,709,319
Ensembl chr 4:140,703,619...140,709,319
JBrowse link
G Crtc1 CREB regulated transcription coactivator 1 ISS
ISO
GO_REF:0000024
(MGI:5532783|PMID:23993098)
UniProt
RGD
PMID:23993098 GO_REF:0000024, MGI:5532783 NCBI chr16:20,740,746...20,798,145
Ensembl chr16:20,740,826...20,794,039
JBrowse link
G Cry1 cryptochrome circadian regulator 1 ISS
ISO
IBA
GO_REF:0000024
(MGI:5490394|PMID:23616524)
PMID:21873635
UniProt
RGD
PMID:23616524, PMID:21873635 GO_REF:0000024, MGI:5490394, RGD:13792537 NCBI chr 7:24,534,593...24,634,098
Ensembl chr 7:24,534,615...24,634,097
JBrowse link
G Cry2 cryptochrome circadian regulator 2 IEA
ISO
IBA
ISS
GO_REF:0000107
(MGI:5490394|PMID:23616524)
PMID:21873635
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:23616524, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:5490394, RGD:13792537 NCBI chr 3:81,314,151...81,344,143
Ensembl chr 3:81,314,149...81,344,110
JBrowse link
G Fbxl12 F-box and leucine-rich repeat protein 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:21,656,636...21,662,755
Ensembl chr 8:21,656,639...21,661,259
JBrowse link
G Fbxl21 F-box and leucine-rich repeat protein 21 IBA
ISO
PMID:21873635
(MGI:5470183|PMID:23452855), (MGI:5487698|PMID:23452856)
RGD PMID:23452855, PMID:23452856, PMID:21873635 MGI:5470183, MGI:5487698, RGD:13792537 NCBI chr17:8,505,771...8,520,208
Ensembl chr17:8,505,996...8,520,147
JBrowse link
G Fbxl22 F-box and leucine-rich repeat protein 22 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:72,198,043...72,204,730
Ensembl chr 8:72,198,043...72,204,730
JBrowse link
G Fbxl3 F-box and leucine-rich repeat protein 3 IBA
ISO
PMID:21873635
(MGI:5470183|PMID:23452855), (MGI:5487698|PMID:23452856), (MGI:5490394|PMID:23616524)
RGD PMID:23452855, PMID:23452856, PMID:23616524, PMID:21873635 MGI:5470183, MGI:5487698, MGI:5490394, RGD:13792537 NCBI chr15:93,647,307...93,667,395
Ensembl chr15:93,647,310...93,667,395
JBrowse link
G Fbxl6 F-box and leucine-rich repeat protein 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:117,602,056...117,604,954
Ensembl chr 7:117,602,041...117,605,141
JBrowse link
G Fbxl8 F-box and leucine-rich repeat protein 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:37,216,696...37,225,701
Ensembl chr19:37,221,132...37,226,065
JBrowse link
G Id2 inhibitor of DNA binding 2 ISS
ISO
GO_REF:0000024
(MGI:3838062|PMID:19217292)
UniProt
RGD
PMID:19217292 GO_REF:0000024, MGI:3838062 NCBI chr 6:44,360,077...44,361,908
Ensembl chr 6:44,348,501...44,363,915
JBrowse link
G Mta1 metastasis associated 1 ISS
ISO
GO_REF:0000024
(MGI:5582861|PMID:24089055)
UniProt
RGD
PMID:24089055 GO_REF:0000024, MGI:5582861 NCBI chr 6:137,911,302...137,950,066
Ensembl chr 6:137,924,293...137,950,075
JBrowse link
G Nr2f6 nuclear receptor subfamily 2, group F, member 6 IEA
ISO
GO_REF:0000107
MGI:3574037 (MGI:3530176|PMID:15741322)
Ensembl
RGD
PMID:15741322 GO_REF:0000107, MGI:3530176 NCBI chr16:19,769,968...19,777,414
Ensembl chr16:19,769,968...19,777,414
JBrowse link
G Opn4 opsin 4 ISO (MGI:5925970|PMID:26320947) RGD PMID:26320947 MGI:5925970 NCBI chr16:10,943,353...10,966,602
Ensembl chr16:10,943,341...10,952,549
JBrowse link
G Opn5 opsin 5 ISO (MGI:5699646|PMID:26392540), (MGI:6376341|PMID:31607531), (MGI:6378274|PMID:30240620) RGD PMID:26392540, PMID:30240620, PMID:31607531 MGI:5699646, MGI:6376341, MGI:6378274 NCBI chr 9:21,045,457...21,092,517
Ensembl chr 9:21,045,457...21,093,172
JBrowse link
G Pde6b phosphodiesterase 6B ISO (MGI:6378274|PMID:30240620) RGD PMID:30240620 MGI:6378274 NCBI chr14:2,328,690...2,371,913
Ensembl chr14:2,328,750...2,371,883
JBrowse link
G Per1 period circadian regulator 1 IEA
ISO
IBA
ISS
GO_REF:0000107
(MGI:3578039|PMID:15888647)
PMID:21873635
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:15888647, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:3578039, RGD:13792537 NCBI chr10:55,681,761...55,696,557
Ensembl chr10:55,687,050...55,695,994
JBrowse link
G Per2 period circadian regulator 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:98,555,154...98,597,362
Ensembl chr 9:98,555,169...98,597,359
JBrowse link
G Per3 period circadian regulator 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:168,088,126...168,123,482
Ensembl chr 5:168,086,998...168,123,395
JBrowse link
G Pml PML nuclear body scaffold ISO (MGI:5314433|PMID:22274616) RGD PMID:22274616 MGI:5314433 NCBI chr 8:63,002,515...63,034,310
Ensembl chr 8:63,004,870...63,034,226
JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha ISS
ISO
GO_REF:0000024
(MGI:5086036|PMID:21712997)
UniProt
RGD
PMID:21712997 GO_REF:0000024, MGI:5086036 NCBI chr 1:219,439,953...219,443,570
Ensembl chr 1:219,439,953...219,443,570
JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta ISS
ISO
GO_REF:0000024
(MGI:5086036|PMID:21712997)
UniProt
RGD
PMID:21712997 GO_REF:0000024, MGI:5086036 NCBI chr 6:23,548,507...23,581,136
Ensembl chr 6:23,549,317...23,581,052
JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma ISS
ISO
GO_REF:0000024
(MGI:5086036|PMID:21712997)
UniProt
RGD
PMID:21712997 GO_REF:0000024, MGI:5086036 NCBI chr12:39,864,302...39,882,030
Ensembl chr12:39,864,295...39,882,030
JBrowse link
G Rbm4 RNA binding motif protein 4 ISO (MGI:3703208|PMID:17264215) RGD PMID:17264215 MGI:3703208 NCBI chr 1:220,038,403...220,049,756
Ensembl chr 1:220,039,734...220,048,966
JBrowse link
G Rbm4b RNA binding motif protein 4B ISS
ISO
GO_REF:0000024
(MGI:3703208|PMID:17264215)
UniProt
RGD
PMID:17264215 GO_REF:0000024, MGI:3703208 NCBI chr 1:220,009,397...220,019,488
Ensembl chr 1:220,009,397...220,019,486
JBrowse link
G Sik1 salt-inducible kinase 1 ISS
ISO
GO_REF:0000024
(MGI:5532783|PMID:23993098)
UniProt
RGD
PMID:23993098 GO_REF:0000024, MGI:5532783 NCBI chr20:10,670,747...10,680,279
Ensembl chr20:10,668,411...10,680,283
JBrowse link
G Tp53 tumor protein p53 ISS
ISO
GO_REF:0000024
(MGI:5613453|PMID:24051492)
UniProt
RGD
PMID:24051492 GO_REF:0000024, MGI:5613453 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Usp2 ubiquitin specific peptidase 2 ISS
ISO
GO_REF:0000024
(MGI:5607210|PMID:23213472)
UniProt
RGD
PMID:23213472 GO_REF:0000024, MGI:5607210 NCBI chr 8:48,403,985...48,432,525
Ensembl chr 8:48,406,260...48,430,885
JBrowse link
long-day photoperiodism term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agrp agouti related neuropeptide IEP RGD PMID:19490367 RGD:6480663 NCBI chr19:37,525,941...37,584,875
Ensembl chr19:37,526,419...37,528,011
JBrowse link
short-day photoperiodism term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npy neuropeptide Y IEP RGD PMID:19490367 RGD:6480663 NCBI chr 4:79,557,856...79,565,059
Ensembl chr 4:79,557,854...79,565,097
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    response to stimulus 10580
      response to abiotic stimulus 1514
        response to radiation 535
          response to light stimulus 347
            photoperiodism 36
              entrainment of circadian clock by photoperiod 30
              long-day photoperiodism + 1
              photoperiodism, flowering + 0
              response to photoperiod, blue light 0
              response to photoperiod, red light 0
              short-day photoperiodism + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.