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ONTOLOGY REPORT - ANNOTATIONS


Term:axis specification
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Accession:GO:0009798 term browser browse the term
Definition:The establishment, maintenance and elaboration of a pattern along a line or around a point.
Synonyms:related_synonym: axis determination


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axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apc APC, WNT signaling pathway regulator JBrowse link 18 34,220,297 34,322,190 RGD:2290270
G Ripply2 ripply transcriptional repressor 2 JBrowse link 9 87,015,309 87,020,441 RGD:2290270
G Wnt6 wingless-type MMTV integration site family, member 6 JBrowse link 1 74,754,342 74,785,322 RGD:2290270
anterior/posterior axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aurka aurora kinase A JBrowse link 2 172,356,190 172,370,886 RGD:2290270
G Bmp4 bone morphogenetic protein 4 JBrowse link 14 46,383,525 46,390,669 RGD:2290270
G Cdx1 caudal type homeobox 1 JBrowse link 18 61,018,862 61,036,199 RGD:2290270
G Cdx2 caudal type homeobox 2 JBrowse link 5 147,300,900 147,307,249 RGD:2290270
G Cdx4 caudal type homeobox 4 JBrowse link X 103,321,398 103,330,224 RGD:2290270
G Cer1 cerberus 1, DAN family BMP antagonist JBrowse link 4 82,881,751 82,885,151 RGD:2290270
G Ctnnb1 catenin (cadherin associated protein), beta 1 JBrowse link 9 120,933,400 120,960,507 RGD:2290270
G Gpc3 glypican 3 JBrowse link X 52,272,426 52,613,974 RGD:2290270
G Hey1 hairy/enhancer-of-split related with YRPW motif 1 JBrowse link 3 8,663,359 8,667,038 RGD:2290270
G Hey2 hairy/enhancer-of-split related with YRPW motif 2 JBrowse link 10 30,832,359 30,842,783 RGD:2290270
G Ldb1 LIM domain binding 1 JBrowse link 19 46,031,525 46,048,145 RGD:2290270
G Lefty1 left right determination factor 1 JBrowse link 1 180,935,022 180,938,401 RGD:2290270
G Lhx1 LIM homeobox protein 1 JBrowse link 11 84,517,975 84,525,534 RGD:2290270
G Nodal nodal JBrowse link 10 61,417,972 61,425,338 RGD:2290270
G Pgap1 post-GPI attachment to proteins 1 JBrowse link 1 54,473,000 54,557,684 RGD:2290270
G Rnf2 ring finger protein 2 JBrowse link 1 151,469,398 151,500,991 RGD:2290270
G Six2 sine oculis-related homeobox 2 JBrowse link 17 85,662,736 85,688,254 RGD:2290270
G Ski ski sarcoma viral oncogene homolog (avian) JBrowse link 4 155,154,075 155,222,535 RGD:2290270
G Tbx18 T-box18 JBrowse link 9 87,702,800 87,731,260 RGD:2290270
G Tdgf1 teratocarcinoma-derived growth factor 1 JBrowse link 9 110,939,608 110,946,158 RGD:2290270
G Wls wntless WNT ligand secretion mediator JBrowse link 3 159,839,650 159,938,666 RGD:2290270
G Wnt3 wingless-type MMTV integration site family, member 3 JBrowse link 11 103,774,175 103,818,021 RGD:2290270
anterior/posterior axis specification, embryo term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Frs2 fibroblast growth factor receptor substrate 2 JBrowse link 10 117,070,127 117,148,474 RGD:2290270
G Fzd5 frizzled class receptor 5 JBrowse link 1 64,730,558 64,737,750 RGD:2290270
G Tbx3 T-box 3 JBrowse link 5 119,670,534 119,684,724 RGD:2290270
G Tcf7l1 transcription factor 7 like 1 (T cell specific, HMG box) JBrowse link 6 72,626,371 72,789,045 RGD:2290270
G Tdgf1 teratocarcinoma-derived growth factor 1 JBrowse link 9 110,939,608 110,946,158 RGD:2290270
G Wnt5a wingless-type MMTV integration site family, member 5A JBrowse link 14 28,504,543 28,527,448 RGD:2290270
dorsal/ventral axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Axin1 axin 1 JBrowse link 17 26,131,217 26,195,811 RGD:2290270
G Bmpr1a bone morphogenetic protein receptor, type 1A JBrowse link 14 34,411,061 34,503,336 RGD:2290270
G Ctnnb1 catenin (cadherin associated protein), beta 1 JBrowse link 9 120,933,400 120,960,507 RGD:2290270
G Lrp6 low density lipoprotein receptor-related protein 6 JBrowse link 6 134,446,476 134,566,913 RGD:2290270
G Mdfi MyoD family inhibitor JBrowse link 17 47,815,328 47,834,691 RGD:2290270
G Pax6 paired box 6 JBrowse link 2 105,668,896 105,698,410 RGD:2290270
G Senp2 SUMO/sentrin specific peptidase 2 JBrowse link 16 22,009,432 22,049,269 RGD:2290270
G Sfrp1 secreted frizzled-related protein 1 JBrowse link 8 23,411,383 23,449,632 RGD:2290270
G Vax2 ventral anterior homeobox 2 JBrowse link 6 83,711,239 83,738,313 RGD:2290270
G Wnt3 wingless-type MMTV integration site family, member 3 JBrowse link 11 103,774,175 103,818,021 RGD:2290270
embryonic axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 JBrowse link X 102,247,378 102,252,181 RGD:2290270
G Cobl cordon-bleu WH2 repeat JBrowse link 11 12,236,676 12,465,022 RGD:2290270
G Ctnnb1 catenin (cadherin associated protein), beta 1 JBrowse link 9 120,933,400 120,960,507 RGD:2290270
G Frat1 frequently rearranged in advanced T cell lymphomas JBrowse link 19 41,829,970 41,832,583 RGD:2290270
G Fzd5 frizzled class receptor 5 JBrowse link 1 64,730,558 64,737,750 RGD:2290270
G Peg12 paternally expressed 12 JBrowse link 7 62,461,871 62,464,510 RGD:2290270
G Stil Scl/Tal1 interrupting locus JBrowse link 4 115,000,108 115,043,203 RGD:2290270
G Wnt1 wingless-type MMTV integration site family, member 1 JBrowse link 15 98,789,857 98,793,830 RGD:2290270
G Wnt7a wingless-type MMTV integration site family, member 7A JBrowse link 6 91,363,981 91,411,353 RGD:2290270
epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nodal nodal JBrowse link 10 61,417,972 61,425,338 RGD:2290270
establishment of anatomical structure orientation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ttc8 tetratricopeptide repeat domain 8 JBrowse link 12 98,920,537 98,983,250 RGD:2290270
establishment of animal organ orientation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wnt8a wingless-type MMTV integration site family, member 8A JBrowse link 18 34,542,327 34,548,061 RGD:2290270
growth plate cartilage axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Stc1 stanniocalcin 1 JBrowse link 14 69,029,289 69,041,401 RGD:2290270
left/right axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arl13b ADP-ribosylation factor-like 13B JBrowse link 16 62,793,308 62,847,055 RGD:2290270
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 JBrowse link 10 17,723,228 17,725,674 RGD:2290270
G Dll1 delta like canonical Notch ligand 1 JBrowse link 17 15,367,354 15,376,927 RGD:2290270
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 JBrowse link 1 119,545,032 119,649,096 RGD:2290270
G Hspb11 heat shock protein family B (small), member 11 JBrowse link 4 107,253,593 107,284,497 RGD:2290270
G Ift172 intraflagellar transport 172 JBrowse link 5 31,253,279 31,291,391 RGD:2290270
G Mns1 meiosis-specific nuclear structural protein 1 JBrowse link 9 72,437,821 72,458,581 RGD:2290270
G Notch1 notch 1 JBrowse link 2 26,457,902 26,503,822 RGD:2290270
G Notch2 notch 2 JBrowse link 3 98,013,538 98,150,367 RGD:2290270
G Pitx2 paired-like homeodomain transcription factor 2 JBrowse link 3 129,199,878 129,219,594 RGD:2290270
G Pkd1l1 polycystic kidney disease 1 like 1 JBrowse link 11 8,825,696 8,974,709 RGD:2290270
G Smo smoothened, frizzled class receptor JBrowse link 6 29,735,497 29,761,366 RGD:2290270
lung proximal/distal axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fgf10 fibroblast growth factor 10 JBrowse link 13 118,714,699 118,792,573 RGD:2290270
negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Axin2 axin 2 JBrowse link 11 108,917,828 108,950,783 RGD:2290270
G Sfrp1 secreted frizzled-related protein 1 JBrowse link 8 23,411,383 23,449,632 RGD:2290270
neural plate axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C2cd3 C2 calcium-dependent domain containing 3 JBrowse link 7 100,372,229 100,470,159 RGD:2290270
G Ptch1 patched 1 JBrowse link 13 63,508,328 63,573,460 RGD:2290270
P granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pld6 phospholipase D family, member 6 JBrowse link 11 59,783,893 59,787,657 RGD:2290270
G Tdrd5 tudor domain containing 5 JBrowse link 1 156,255,296 156,304,304 RGD:2290270
polarity specification of anterior/posterior axis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Shh sonic hedgehog JBrowse link 5 28,456,840 28,467,101 RGD:2290270
G Wnt8a wingless-type MMTV integration site family, member 8A JBrowse link 18 34,542,327 34,548,061 RGD:2290270
polarity specification of proximal/distal axis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nodal nodal JBrowse link 10 61,417,972 61,425,338 RGD:2290270
G Wnt8a wingless-type MMTV integration site family, member 8A JBrowse link 18 34,542,327 34,548,061 RGD:2290270
pole plasm assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wdr77 WD repeat domain 77 JBrowse link 3 105,959,498 105,969,760 RGD:2290270
primitive streak formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ets2 E26 avian leukemia oncogene 2, 3' domain JBrowse link 16 95,702,407 95,721,049 RGD:2290270
G Foxa2 forkhead box A2 JBrowse link 2 148,042,877 148,046,969 RGD:2290270
G Gdf3 growth differentiation factor 3 JBrowse link 6 122,605,403 122,610,087 RGD:2290270
G Hhex hematopoietically expressed homeobox JBrowse link 19 37,434,841 37,440,731 RGD:2290270
G Lhx1 LIM homeobox protein 1 JBrowse link 11 84,517,975 84,525,534 RGD:2290270
G Lrp6 low density lipoprotein receptor-related protein 6 JBrowse link 6 134,446,476 134,566,913 RGD:2290270
G Nodal nodal JBrowse link 10 61,417,972 61,425,338 RGD:2290270
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:2290270
G Srf serum response factor JBrowse link 17 46,546,838 46,558,267 RGD:2290270
G Wnt5a wingless-type MMTV integration site family, member 5A JBrowse link 14 28,504,543 28,527,448 RGD:2290270
proximal/distal axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Six3 sine oculis-related homeobox 3 JBrowse link 17 85,613,608 85,626,191 RGD:2290270
regulation of transcription involved in anterior/posterior axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddit3 DNA-damage inducible transcript 3 JBrowse link 10 127,290,793 127,296,291 RGD:2290270
somite rostral/caudal axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 JBrowse link 1 119,545,032 119,649,096 RGD:2290270
G Foxa2 forkhead box A2 JBrowse link 2 148,042,877 148,046,969 RGD:2290270
G Gdf3 growth differentiation factor 3 JBrowse link 6 122,605,403 122,610,087 RGD:2290270
G Kdm6a lysine (K)-specific demethylase 6A JBrowse link X 18,160,862 18,279,936 RGD:2290270
G Lhx1 LIM homeobox protein 1 JBrowse link 11 84,517,975 84,525,534 RGD:2290270
G Mesp1 mesoderm posterior 1 JBrowse link 7 79,792,241 79,793,590 RGD:2290270
G Mesp2 mesoderm posterior 2 JBrowse link 7 79,810,727 79,813,431 RGD:2290270
G Nrarp Notch-regulated ankyrin repeat protein JBrowse link 2 25,180,758 25,183,339 RGD:2290270
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:2290270
G Ripply1 ripply transcriptional repressor 1 JBrowse link X 139,779,681 139,782,353 RGD:2290270
G Ripply2 ripply transcriptional repressor 2 JBrowse link 9 87,015,309 87,020,441 RGD:2290270
G Smad4 SMAD family member 4 JBrowse link 18 73,634,790 73,703,791 RGD:2290270
G Tbx6 T-box 6 JBrowse link 7 126,781,483 126,785,548 RGD:2290270
G Tmed2 transmembrane p24 trafficking protein 2 JBrowse link 5 124,540,791 124,550,503 RGD:2290270
specification of axis polarity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahi1 Abelson helper integration site 1 JBrowse link 10 20,952,232 21,080,429 RGD:2290270
G Bcor BCL6 interacting corepressor JBrowse link X 12,036,737 12,160,516 RGD:2290270
thorax and anterior abdomen determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Neurog1 neurogenin 1 JBrowse link 13 56,250,478 56,252,180 RGD:2290270
G Tifab TRAF-interacting protein with forkhead-associated domain, family member B JBrowse link 13 56,173,703 56,179,002 RGD:2290270
G Wt1 Wilms tumor 1 homolog JBrowse link 2 105,126,529 105,173,614 RGD:2290270
transforming growth factor beta receptor signaling pathway involved in primitive streak formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nodal nodal JBrowse link 10 61,417,972 61,425,338 RGD:2290270
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nckap1 NCK-associated protein 1 JBrowse link 2 80,500,512 80,581,182 RGD:2290270
G Pcsk6 proprotein convertase subtilisin/kexin type 6 JBrowse link 7 65,862,136 66,050,386 RGD:2290270
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smad2 SMAD family member 2 JBrowse link 18 76,241,090 76,311,748 RGD:2290270
G Smad6 SMAD family member 6 JBrowse link 9 63,953,076 64,022,085 RGD:2290270

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23155
    multicellular organismal process 8375
      pattern specification process 475
        axis specification 93
          adaxial/abaxial axis specification + 0
          anterior/posterior axis specification + 55
          anterior/posterior axis specification, follicular epithelium 0
          centrolateral axis specification 0
          dorsal/ventral axis specification + 13
          embryonic axis specification + 40
          establishment of anatomical structure orientation + 2
          growth plate cartilage axis specification 1
          left/right axis specification 12
          oocyte axis specification + 3
          proximal/distal axis specification + 4
          radial axis specification 0
          specification of axis polarity + 5
Path 2
Term Annotations click to browse term
  biological_process 23155
    developmental process 6417
      anatomical structure development 5943
        multicellular organism development 5434
          pattern specification process 475
            axis specification 93
              adaxial/abaxial axis specification + 0
              anterior/posterior axis specification + 55
              anterior/posterior axis specification, follicular epithelium 0
              centrolateral axis specification 0
              dorsal/ventral axis specification + 13
              embryonic axis specification + 40
              establishment of anatomical structure orientation + 2
              growth plate cartilage axis specification 1
              left/right axis specification 12
              oocyte axis specification + 3
              proximal/distal axis specification + 4
              radial axis specification 0
              specification of axis polarity + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.