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ONTOLOGY REPORT - ANNOTATIONS


Term:alkaloid metabolic process
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Accession:GO:0009820 term browser browse the term
Definition:The chemical reactions and pathways involving alkaloids, nitrogen containing natural products which are not otherwise classified as peptides, nonprotein amino acids, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones or primary metabolites (such as purine or pyrimidine bases).
Synonyms:exact_synonym: alkaloid metabolism


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alkaloid metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 ISO (PMID:11511187) RGD PMID:11511187 NCBI chr 8:62,451,360...62,458,244
Ensembl chr 8:62,451,329...62,458,301
JBrowse link
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 ISO (PMID:19651758) RGD PMID:19651758 NCBI chr 7:123,599,264...123,608,436
Ensembl chr 7:123,599,266...123,608,436
JBrowse link
alkaloid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 ISO (PMID:15039299) RGD PMID:15039299 NCBI chr 7:123,599,264...123,608,436
Ensembl chr 7:123,599,266...123,608,436
JBrowse link
G Cyp3a9 cytochrome P450, family 3, subfamily a, polypeptide 9 ISO (PMID:15039299) RGD PMID:15039299 NCBI chr12:19,074,288...19,114,491
Ensembl chr12:19,074,583...19,114,399
JBrowse link
isoquinoline alkaloid metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 ISO (PMID:19448135) RGD PMID:19448135 NCBI chr 7:123,599,264...123,608,436
Ensembl chr 7:123,599,266...123,608,436
JBrowse link
G Ddc dopa decarboxylase IEP anonaine RGD PMID:18305432 RGD:5129087 NCBI chr14:91,905,919...91,996,816
Ensembl chr14:91,905,919...91,996,774
JBrowse link
G Th tyrosine hydroxylase IEP anonaine RGD PMID:18305432 RGD:5129087 NCBI chr 1:216,073,034...216,080,287
Ensembl chr 1:216,073,031...216,080,287
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      organic substance metabolic process 11643
        organonitrogen compound metabolic process 7134
          alkaloid metabolic process 5
            alkaloid biosynthetic process + 0
            alkaloid catabolic process + 2
            indole alkaloid metabolic process + 0
            isoquinoline alkaloid metabolic process + 3
            nicotinamide metabolic process + 0
            nicotinate metabolic process + 0
            purine alkaloid metabolic process + 0
            pyrrolizidine alkaloid metabolic process + 0
            stachydrine metabolic process + 0
            terrequinone A metabolic process + 0
            tropane alkaloid metabolic process + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.