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ONTOLOGY REPORT - ANNOTATIONS


Term:dorsal/ventral axis specification
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Accession:GO:0009950 term browser browse the term
Definition:The establishment, maintenance and elaboration of the dorsal/ventral axis. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
Synonyms:exact_synonym: dorsoventral axis specification
 related_synonym: dorsal/ventral axis determination


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dorsal/ventral axis specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 ISO (MGI:1337175|PMID:10330403) RGD PMID:10330403 MGI:1337175
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:2181295 (MGI:2670493|PMID:12923052) RGD PMID:12923052 MGI:2670493 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Ctnnb1 catenin beta 1 IEA
ISO
GO_REF:0000107
MGI:2148594|MGI:2158470 (MGI:2670493|PMID:12923052)
Ensembl
RGD
PMID:12923052 GO_REF:0000107, MGI:2670493 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:2156191 (MGI:3823171|PMID:18985738) RGD PMID:18985738 MGI:3823171 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Mdfi MyoD family inhibitor ISO (MGI:4441142|PMID:11238923) RGD PMID:11238923 MGI:4441142 NCBI chr 9:15,166,118...15,184,469
Ensembl chr 9:15,166,118...15,184,468
JBrowse link
G Pax6 paired box 6 IEA
ISO
GO_REF:0000107
MGI:1856155|MGI:1934347 (MGI:1350715|PMID:10588713)
Ensembl
RGD
PMID:10588713 GO_REF:0000107, MGI:1350715 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Senp2 SUMO specific peptidase 2 IDA RGD PMID:10944533 RGD:1299408 NCBI chr11:82,627,973...82,664,702
Ensembl chr11:82,630,436...82,664,630
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 IEA
ISO
GO_REF:0000107
(PMID:9192640)
Ensembl
RGD
PMID:9192640 GO_REF:0000107 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Vax2 ventral anterior homeobox 2 IEA
ISO
GO_REF:0000107
MGI:2159246|MGI:2388160 (MGI:2157789|PMID:11830578), (MGI:2157790|PMID:11830579)
Ensembl
RGD
PMID:11830578, PMID:11830579 GO_REF:0000107, MGI:2157789, MGI:2157790 NCBI chr 4:115,388,839...115,412,515
Ensembl chr 4:115,388,839...115,412,515
JBrowse link
G Wnt3 Wnt family member 3 ISO MGI:2450902|MGI:2450903 (MGI:2450015|PMID:12569130) RGD PMID:12569130 MGI:2450015 NCBI chr10:91,830,709...91,874,907
Ensembl chr10:91,830,654...91,874,793
JBrowse link
negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 IDA RGD PMID:9566905 RGD:68736 NCBI chr10:97,212,483...97,238,824
Ensembl chr10:97,212,432...97,239,642
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 IEA
ISO
GO_REF:0000107
(PMID:9192640)
Ensembl
RGD
PMID:9192640 GO_REF:0000107 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad2 SMAD family member 2 ISO (PMID:9436979) RGD PMID:9436979 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Smad6 SMAD family member 6 ISO (PMID:9436979) RGD PMID:9436979 NCBI chr 8:68,897,746...68,967,221
Ensembl chr 8:68,898,296...68,966,108
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    multicellular organismal process 9047
      pattern specification process 493
        axis specification 96
          dorsal/ventral axis specification 13
            Wnt signaling pathway involved in dorsal/ventral axis specification + 2
            dorsal/ventral axis specification, ovarian follicular epithelium + 0
            oocyte dorsal/ventral axis specification + 0
            polarity specification of dorsal/ventral axis 0
            zygotic specification of dorsal/ventral axis 2
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        multicellular organism development 5743
          pattern specification process 493
            regionalization 389
              dorsal/ventral pattern formation 102
                dorsal/ventral axis specification 13
                  Wnt signaling pathway involved in dorsal/ventral axis specification + 2
                  dorsal/ventral axis specification, ovarian follicular epithelium + 0
                  oocyte dorsal/ventral axis specification + 0
                  polarity specification of dorsal/ventral axis 0
                  zygotic specification of dorsal/ventral axis 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.