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ONTOLOGY REPORT - ANNOTATIONS


Term:dorsal/ventral pattern formation
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Accession:GO:0009953 term browser browse the term
Definition:The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
Synonyms:exact_synonym: dorsoventral pattern formation
 narrow_synonym: dorsal/ventral pattern specification


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dorsal/ventral pattern formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Acvrl1 activin A receptor like type 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:142,769,942...142,787,336
Ensembl chr 7:142,776,252...142,787,335
JBrowse link
G Apc APC regulator of WNT signaling pathway ISO MGI:MGI:2449944 (MGI:MGI:2449253|PMID:12645927) RGD PMID:12645927 MGI:MGI:2449253 NCBI chr18:27,011,710...27,106,323
Ensembl chr18:27,047,382...27,105,531
JBrowse link
G Arl13b ADP-ribosylation factor like GTPase 13B ISO MGI:MGI:3578151 (MGI:MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:MGI:3577662 NCBI chr 7:1,122,567...1,188,209
Ensembl chr 7:1,122,567...1,188,209
JBrowse link
G Axin1 axin 1 ISO MGI:MGI:1856035 (MGI:MGI:3797993|PMID:18316368) RGD PMID:18316368 MGI:MGI:3797993
G Bmpr1a bone morphogenetic protein receptor type 1A ISO
IBA
MGI:MGI:107191 (MGI:MGI:3574003|PMID:15673568)
PMID:21873635
RGD PMID:15673568, PMID:21873635 MGI:MGI:3574003, RGD:13792537 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B ISO
IBA
MGI:MGI:1338938 (MGI:MGI:3574003|PMID:15673568)
PMID:21873635
RGD PMID:15673568, PMID:21873635 MGI:MGI:3574003, RGD:13792537 NCBI chr 2:247,392,195...247,662,026
Ensembl chr 2:247,403,920...247,446,882
JBrowse link
G Chrd chordin ISO MGI:MGI:2157350 (MGI:MGI:2662951|PMID:12810603) RGD PMID:12810603 MGI:MGI:2662951 NCBI chr11:83,858,503...83,867,543
Ensembl chr11:83,858,503...83,867,203
JBrowse link
G Ctnnb1 catenin beta 1 ISO MGI:MGI:2148567|MGI:MGI:2176173 (MGI:MGI:3529734|PMID:15708565) RGD PMID:15708565 MGI:MGI:3529734 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Disp1 dispatched RND transporter family member 1 ISO MGI:MGI:2448055|MGI:MGI:98297 (MGI:MGI:3051703|PMID:15269168), (MGI:MGI:3577662|PMID:15755804) RGD PMID:15269168, PMID:15755804 MGI:MGI:3051703, MGI:MGI:3577662 NCBI chr13:101,451,932...101,597,570
Ensembl chr13:101,451,932...101,597,570
JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 IEA
ISO
GO_REF:0000107
MGI:MGI:105373|MGI:MGI:3578144|MGI:MGI:95729|MGI:MGI:98297 (MGI:MGI:3577662|PMID:15755804), (MGI:MGI:3588600|PMID:16061793), (MGI:MGI:3610248|PMID:16229832), (MGI:MGI:5441704|PMID:21552265)
Ensembl
RGD
PMID:15755804, PMID:16061793, PMID:16229832, PMID:21552265 GO_REF:0000107, MGI:MGI:3577662, MGI:MGI:3588600, MGI:MGI:3610248, MGI:MGI:5441704 NCBI chr 8:5,217,054...5,436,969
Ensembl chr 8:5,217,217...5,429,581
JBrowse link
G Edn1 endothelin 1 ISO MGI:MGI:1857637 (MGI:MGI:3043904|PMID:15110048) RGD PMID:15110048 MGI:MGI:3043904 NCBI chr17:22,136,814...22,143,745
Ensembl chr17:22,137,324...22,143,324
JBrowse link
G En1 engrailed homeobox 1 ISO
IEA
MGI:MGI:1857163 (MGI:MGI:1194987|PMID:9362463), (MGI:MGI:81767|PMID:8684466)
GO_REF:0000107
RGD
Ensembl
PMID:8684466, PMID:9362463 GO_REF:0000107, MGI:MGI:1194987, MGI:MGI:81767 NCBI chr13:36,532,758...36,537,888
Ensembl chr13:36,532,758...36,537,093
JBrowse link
G Fbxl15 F-box and leucine-rich repeat protein 15 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:266,075,782...266,078,023
Ensembl chr 1:266,075,782...266,078,023
JBrowse link
G Fgf8 fibroblast growth factor 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 ISO MGI:MGI:3042750 (MGI:MGI:3039989|PMID:15105374) RGD PMID:15105374 MGI:MGI:3039989 NCBI chr16:20,645,956...20,652,890
Ensembl chr16:20,645,957...20,652,889
JBrowse link
G Foxa2 forkhead box A2 ISO MGI:MGI:99783 (MGI:MGI:1344734|PMID:10498685) RGD PMID:10498685 MGI:MGI:1344734 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Foxg1 forkhead box G1 ISO MGI:MGI:1857771|MGI:MGI:1932522 (MGI:MGI:2679162|PMID:14566948), (MGI:MGI:3581994|PMID:15893304) RGD PMID:14566948, PMID:15893304 MGI:MGI:2679162, MGI:MGI:3581994 NCBI chr 6:69,971,227...69,974,037
Ensembl chr 6:69,971,227...69,974,037
JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:MGI:3711070 (MGI:MGI:3710452|PMID:17504940) RGD PMID:17504940 MGI:MGI:3710452 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940
JBrowse link
G Gli1 GLI family zinc finger 1 ISO MGI:MGI:95728 (MGI:MGI:3617688|PMID:16342201) RGD PMID:16342201 MGI:MGI:3617688 NCBI chr 7:70,620,794...70,633,171
Ensembl chr 7:70,620,766...70,630,338
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:MGI:95727 (MGI:MGI:3617688|PMID:16342201) RGD PMID:16342201 MGI:MGI:3617688 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:1856275|MGI:MGI:1856276 (MGI:MGI:2445272|PMID:12435629), (MGI:MGI:3028732|PMID:14723851), (MGI:MGI:3624182|PMID:16571630) RGD PMID:12435629, PMID:14723851, PMID:16571630 MGI:MGI:2445272, MGI:MGI:3028732, MGI:MGI:3624182 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Hhip Hedgehog-interacting protein ISO MGI:MGI:105373 (MGI:MGI:3511726|PMID:15576403) RGD PMID:15576403 MGI:MGI:3511726 NCBI chr19:31,525,134...31,614,487
Ensembl chr19:31,524,671...31,614,246
JBrowse link
G Hoxa11 homeobox A11 ISO MGI:MGI:96203 (MGI:MGI:2135652|PMID:11493536) RGD PMID:11493536 MGI:MGI:2135652 NCBI chr 4:82,296,888...82,301,419
Ensembl chr 4:82,298,152...82,300,503
Ensembl chr 4:82,298,152...82,300,503
JBrowse link
G Hoxa2 homeobox A2 ISO MGI:MGI:1857626|MGI:MGI:96183 (MGI:MGI:1335668|PMID:10230789) RGD PMID:10230789 MGI:MGI:1335668 NCBI chr 4:82,130,441...82,134,846
Ensembl chr 4:82,131,329...82,133,605
JBrowse link
G Hoxb2 homeobox B2 ISO MGI:MGI:96174 (MGI:MGI:1335668|PMID:10230789) RGD PMID:10230789 MGI:MGI:1335668 NCBI chr10:84,200,859...84,203,065
Ensembl chr10:84,200,880...84,202,688
JBrowse link
G Hoxd11 homeobox D11 ISO MGI:MGI:96172 (MGI:MGI:2135652|PMID:11493536) RGD PMID:11493536 MGI:MGI:2135652 NCBI chr 3:61,604,256...61,606,874
Ensembl chr 3:61,604,672...61,606,400
JBrowse link
G Ift122 intraflagellar transport 122 ISO MGI:MGI:3578529|MGI:MGI:98297 (MGI:MGI:3577662|PMID:15755804), (MGI:MGI:5441704|PMID:21552265) RGD PMID:15755804, PMID:21552265 MGI:MGI:3577662, MGI:MGI:5441704 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:MGI:108075|MGI:MGI:2682066 (MGI:MGI:2679893|PMID:14603322), (MGI:MGI:3577662|PMID:15755804), (MGI:MGI:3588600|PMID:16061793), (MGI:MGI:5441704|PMID:21552265) RGD PMID:14603322, PMID:15755804, PMID:16061793, PMID:21552265 MGI:MGI:2679893, MGI:MGI:3577662, MGI:MGI:3588600, MGI:MGI:5441704 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ift52 intraflagellar transport 52 ISO (MGI:MGI:3579954|PMID:15930098) RGD PMID:15930098 MGI:MGI:3579954 NCBI chr 3:159,388,868...159,413,358
Ensembl chr 3:159,392,193...159,413,575
JBrowse link
G Ift88 intraflagellar transport 88 ISO MGI:MGI:3027342 (MGI:MGI:3577662|PMID:15755804), (MGI:MGI:3579954|PMID:15930098) RGD PMID:15755804, PMID:15930098 MGI:MGI:3577662, MGI:MGI:3579954 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
JBrowse link
G Kif3a kinesin family member 3a ISO MGI:MGI:3580660 (MGI:MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:MGI:3577662 NCBI chr10:38,918,705...38,953,958
Ensembl chr10:38,918,748...38,952,785
JBrowse link
G Lhx1 LIM homeobox 1 ISO
ISS
MGI:MGI:1347476 (MGI:MGI:1344734|PMID:10498685)
GO_REF:0000024
RGD
UniProt
PMID:10498685 GO_REF:0000024, MGI:MGI:1344734 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Lhx2 LIM homeobox 2 IEA
ISO
GO_REF:0000107
MGI:MGI:1890208 (MGI:MGI:1930361|PMID:11165475), (MGI:MGI:2679162|PMID:14566948)
Ensembl
RGD
PMID:11165475, PMID:14566948 GO_REF:0000107, MGI:MGI:1930361, MGI:MGI:2679162 NCBI chr 3:22,628,674...22,658,447
Ensembl chr 3:22,640,545...22,658,446
JBrowse link
G Lhx3 LIM homeobox 3 ISO MGI:MGI:2385819 (MGI:MGI:3771226|PMID:18037398) RGD PMID:18037398 MGI:MGI:3771226 NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta ISO (PMID:10767331) RGD PMID:10767331 NCBI chr 3:12,608,748...12,686,937
Ensembl chr 3:12,609,574...12,686,869
JBrowse link
G Lrp4 LDL receptor related protein 4 ISO MGI:MGI:3621893|MGI:MGI:3707955 (MGI:MGI:3619629|PMID:16207730), (MGI:MGI:3703100|PMID:17119023) RGD PMID:16207730, PMID:17119023 MGI:MGI:3619629, MGI:MGI:3703100 NCBI chr 3:80,362,643...80,416,684
Ensembl chr 3:80,362,858...80,416,679
JBrowse link
G Nog noggin ISO
IBA
IEA
(PMID:7666191)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:7666191, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Noto notochord homeobox ISO MGI:MGI:1857063 (MGI:MGI:64560|PMID:8155581) RGD PMID:8155581 MGI:MGI:64560 NCBI chr 4:117,206,355...117,210,856
Ensembl chr 4:117,206,355...117,210,856
JBrowse link
G Otx2 orthodenticle homeobox 2 ISO MGI:MGI:2661067 (MGI:MGI:2656991|PMID:12652306) RGD PMID:12652306 MGI:MGI:2656991 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Ovol2 ovo-like zinc finger 2 ISO MGI:MGI:3522498 (MGI:MGI:3618450|PMID:16423343) RGD PMID:16423343 MGI:MGI:3618450 NCBI chr 3:138,433,990...138,464,511
Ensembl chr 3:138,433,990...138,462,063
JBrowse link
G Pax6 paired box 6 ISO MGI:MGI:1856155|MGI:MGI:2156741|MGI:MGI:3521718 (MGI:MGI:3512833|PMID:15548580), (MGI:MGI:3581509|PMID:15878992) RGD PMID:15548580, PMID:15878992 MGI:MGI:3512833, MGI:MGI:3581509 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Prop1 PROP paired-like homeobox 1 ISO
IBA
MGI:MGI:1856842|MGI:MGI:3521736 (MGI:MGI:2389279|PMID:12183375), (MGI:MGI:3512715|PMID:15459176)
PMID:21873635
RGD PMID:12183375, PMID:15459176, PMID:21873635 MGI:MGI:2389279, MGI:MGI:3512715, RGD:13792537 NCBI chr10:36,449,920...36,452,381
Ensembl chr10:36,449,920...36,452,378
JBrowse link
G Ptch1 patched 1 ISO
ISS
MGI:MGI:1341847 (MGI:MGI:3511726|PMID:15576403)
GO_REF:0000024
RGD
UniProt
PMID:15576403 GO_REF:0000024, MGI:MGI:3511726 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Shh sonic hedgehog signaling molecule ISS
ISO
GO_REF:0000024
MGI:MGI:1916147|MGI:MGI:1932386 (MGI:MGI:3051703|PMID:15269168), (MGI:MGI:5441704|PMID:21552265)
UniProt
RGD
PMID:15269168, PMID:21552265 GO_REF:0000024, MGI:MGI:3051703, MGI:MGI:5441704 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smo smoothened, frizzled class receptor ISO MGI:MGI:2137553|MGI:MGI:2176173|MGI:MGI:2176256 (MGI:MGI:3577662|PMID:15755804), (MGI:MGI:3624182|PMID:16571630) RGD PMID:15755804, PMID:16571630 MGI:MGI:3577662, MGI:MGI:3624182 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Sp8 Sp8 transcription factor ISO MGI:MGI:2684137 (MGI:MGI:2679409|PMID:14597661) RGD PMID:14597661 MGI:MGI:2679409 NCBI chr 6:146,784,915...146,789,439
Ensembl chr 6:146,784,915...146,787,518
JBrowse link
G Tbx20 T-box transcription factor 20 ISO MGI:MGI:3580099 (MGI:MGI:3579960|PMID:15901664) RGD PMID:15901664 MGI:MGI:3579960 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 ISO MGI:MGI:3698004 (MGI:MGI:3697552|PMID:17082251) RGD PMID:17082251 MGI:MGI:3697552 NCBI chr 9:119,181,079...119,190,698
Ensembl chr 9:119,181,083...119,190,698
JBrowse link
G Wnt7a Wnt family member 7A ISO MGI:MGI:1857704 (MGI:MGI:1194987|PMID:9362463), (MGI:MGI:71658|PMID:7885472) RGD PMID:7885472, PMID:9362463 MGI:MGI:1194987, MGI:MGI:71658 NCBI chr 4:122,994,425...123,040,609
Ensembl chr 4:122,994,425...123,040,609
JBrowse link
BMP signaling pathway involved in spinal cord dorsal/ventral patterning term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin ISO
IEA
(PMID:11472837)
GO_REF:0000107
RGD
Ensembl
PMID:11472837 GO_REF:0000107 NCBI chr11:83,858,503...83,867,543
Ensembl chr11:83,858,503...83,867,203
JBrowse link
determination of dorsal identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cer1 cerberus 1, DAN family BMP antagonist ISO (PMID:9660951) RGD PMID:9660951 NCBI chr 5:101,003,019...101,006,375
Ensembl chr 5:101,003,023...101,006,375
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist ISO (PMID:9660951) RGD PMID:9660951 NCBI chr 3:105,203,309...105,214,989
Ensembl chr 3:105,203,309...105,214,989
JBrowse link
G Grem2 gremlin 2, DAN family BMP antagonist ISO (MGI:MGI:5507937|PMID:23063586) RGD PMID:23063586 MGI:MGI:5507937 NCBI chr13:92,894,431...92,988,137
Ensembl chr13:92,894,431...92,988,137
JBrowse link
G Nbl1 NBL1, DAN family BMP antagonist ISO
IEA
(MGI:MGI:1203284|PMID:9660951)
GO_REF:0000107
RGD
Ensembl
PMID:9660951 GO_REF:0000107, MGI:MGI:1203284 NCBI chr 5:157,524,569...157,535,701
Ensembl chr 5:157,524,513...157,535,664
JBrowse link
determination of ventral identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aida axin interactor, dorsalization associated IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:101,698,096...101,724,928
Ensembl chr13:101,698,096...101,724,923
JBrowse link
dorsal/ventral axis specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 ISO (MGI:MGI:1337175|PMID:10330403) RGD PMID:10330403 MGI:MGI:1337175
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:MGI:2181295 (MGI:MGI:2670493|PMID:12923052) RGD PMID:12923052 MGI:MGI:2670493 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Ctnnb1 catenin beta 1 ISO
IEA
MGI:MGI:2148594|MGI:MGI:2158470 (MGI:MGI:2670493|PMID:12923052)
GO_REF:0000107
RGD
Ensembl
PMID:12923052 GO_REF:0000107, MGI:MGI:2670493 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:MGI:2156191 (MGI:MGI:3823171|PMID:18985738) RGD PMID:18985738 MGI:MGI:3823171 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Mdfi MyoD family inhibitor ISO (MGI:MGI:4441142|PMID:11238923) RGD PMID:11238923 MGI:MGI:4441142 NCBI chr 9:15,166,118...15,184,469
Ensembl chr 9:15,166,118...15,184,468
JBrowse link
G Pax6 paired box 6 ISO
IEA
MGI:MGI:1856155|MGI:MGI:1934347 (MGI:MGI:1350715|PMID:10588713)
GO_REF:0000107
RGD
Ensembl
PMID:10588713 GO_REF:0000107, MGI:MGI:1350715 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Senp2 SUMO specific peptidase 2 IDA RGD PMID:10944533 RGD:1299408 NCBI chr11:82,627,973...82,664,702
Ensembl chr11:82,630,436...82,664,630
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 IEA
ISO
GO_REF:0000107
(PMID:9192640)
Ensembl
RGD
PMID:9192640 GO_REF:0000107 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Vax2 ventral anterior homeobox 2 IEA
ISO
GO_REF:0000107
MGI:MGI:2159246|MGI:MGI:2388160 (MGI:MGI:2157789|PMID:11830578), (MGI:MGI:2157790|PMID:11830579)
Ensembl
RGD
PMID:11830578, PMID:11830579 GO_REF:0000107, MGI:MGI:2157789, MGI:MGI:2157790 NCBI chr 4:115,388,839...115,412,515
Ensembl chr 4:115,388,839...115,412,515
JBrowse link
G Wnt3 Wnt family member 3 ISO MGI:MGI:2450902|MGI:MGI:2450903 (MGI:MGI:2450015|PMID:12569130) RGD PMID:12569130 MGI:MGI:2450015 NCBI chr10:91,830,709...91,874,907
Ensembl chr10:91,830,654...91,874,793
JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 ISO
IEA
(MGI:MGI:3046395|PMID:15218525)
GO_REF:0000107
RGD
Ensembl
PMID:15218525 GO_REF:0000107, MGI:MGI:3046395 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 ISO MGI:MGI:107689|MGI:MGI:3042750|MGI:MGI:3775614|MGI:MGI:95728 (MGI:MGI:3774974|PMID:18003640), (MGI:MGI:3806189|PMID:18590716) RGD PMID:18003640, PMID:18590716 MGI:MGI:3774974, MGI:MGI:3806189 NCBI chr16:20,645,956...20,652,890
Ensembl chr16:20,645,957...20,652,889
JBrowse link
G Foxa1 forkhead box A1 ISO
IEA
MGI:MGI:1347476 (MGI:MGI:5486225|PMID:23383217)
GO_REF:0000107
RGD
Ensembl
PMID:23383217 GO_REF:0000107, MGI:MGI:5486225 NCBI chr 6:78,516,579...78,549,669
Ensembl chr 6:78,545,804...78,549,669
JBrowse link
G Foxa2 forkhead box A2 ISO MGI:MGI:1347472|MGI:MGI:95841 (MGI:MGI:3806189|PMID:18590716), (MGI:MGI:5486225|PMID:23383217), (MGI:MGI:894511|PMID:9226455) RGD PMID:9226455, PMID:18590716, PMID:23383217 MGI:MGI:3806189, MGI:MGI:5486225, MGI:MGI:894511 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:MGI:3711070|MGI:MGI:98297 (MGI:MGI:3710451|PMID:17504941), (MGI:MGI:3710452|PMID:17504940) RGD PMID:17504940, PMID:17504941 MGI:MGI:3710451, MGI:MGI:3710452 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:MGI:1857509 (MGI:MGI:3806189|PMID:18590716), (MGI:MGI:3841503|PMID:19286674), (MGI:MGI:894564|PMID:9247260) RGD PMID:9247260, PMID:18590716, PMID:19286674 MGI:MGI:3806189, MGI:MGI:3841503, MGI:MGI:894564 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gsc goosecoid homeobox ISO MGI:MGI:1347476 (MGI:MGI:894511|PMID:9226455) RGD PMID:9226455 MGI:MGI:894511 NCBI chr 6:128,147,181...128,149,220
Ensembl chr 6:128,147,181...128,149,220
JBrowse link
G Kif3a kinesin family member 3a ISO MGI:MGI:1341070|MGI:MGI:1861960|MGI:MGI:95728 (MGI:MGI:3806189|PMID:18590716), (MGI:MGI:3841503|PMID:19286674), (MGI:MGI:4888042|PMID:21209331) RGD PMID:18590716, PMID:19286674, PMID:21209331 MGI:MGI:3806189, MGI:MGI:3841503, MGI:MGI:4888042 NCBI chr10:38,918,705...38,953,958
Ensembl chr10:38,918,748...38,952,785
JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 ISO (MGI:MGI:3806189|PMID:18590716) RGD PMID:18590716 MGI:MGI:3806189 NCBI chr 4:2,376,350...2,381,308
Ensembl chr 4:2,376,958...2,381,271
JBrowse link
G Pax7 paired box 7 ISO (MGI:MGI:3806189|PMID:18590716) RGD PMID:18590716 MGI:MGI:3806189 NCBI chr 5:158,211,001...158,313,510
Ensembl chr 5:158,214,616...158,313,426
JBrowse link
G Psen1 presenilin 1 ISO MGI:MGI:109284 (MGI:MGI:1347695|PMID:10557208) RGD PMID:10557208 MGI:MGI:1347695 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Psen2 presenilin 2 ISO MGI:MGI:1202717 (MGI:MGI:1347695|PMID:10557208) RGD PMID:10557208 MGI:MGI:1347695 NCBI chr13:98,513,600...98,539,347
Ensembl chr13:98,513,570...98,530,724
JBrowse link
G Ptch1 patched 1 ISO MGI:MGI:1857447 (MGI:MGI:1095757|PMID:9262482) RGD PMID:9262482 MGI:MGI:1095757 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Rab23 RAB23, member RAS oncogene family ISO (MGI:MGI:69552|PMID:7720556) RGD PMID:7720556 MGI:MGI:69552 NCBI chr 9:38,469,784...38,496,185
Ensembl chr 9:38,470,298...38,495,176
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
GO_REF:0000107
MGI:MGI:95655 (MGI:MGI:3710017|PMID:17442700), (MGI:MGI:3710451|PMID:17504941), (MGI:MGI:3806189|PMID:18590716), (MGI:MGI:4888042|PMID:21209331)
Ensembl
RGD
PMID:17442700, PMID:17504941, PMID:18590716, PMID:21209331 GO_REF:0000107, MGI:MGI:3710017, MGI:MGI:3710451, MGI:MGI:3806189, MGI:MGI:4888042 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smo smoothened, frizzled class receptor ISO
IEA
MGI:MGI:2176255 (MGI:MGI:3806189|PMID:18590716)
GO_REF:0000107
RGD
Ensembl
PMID:18590716 GO_REF:0000107, MGI:MGI:3806189 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Tctn1 tectonic family member 1 ISO MGI:MGI:3716885 (MGI:MGI:3610767|PMID:16357211) RGD PMID:16357211 MGI:MGI:3610767 NCBI chr12:39,790,948...39,828,215
Ensembl chr12:39,790,965...39,824,064
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:MGI:2388066 (MGI:MGI:3841503|PMID:19286674) RGD PMID:19286674 MGI:MGI:3841503 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:MGI:1857489 (MGI:MGI:64780|PMID:8299937) RGD PMID:8299937 MGI:MGI:64780 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 ISO MGI:MGI:1857843|MGI:MGI:2150348 (MGI:MGI:3624179|PMID:16613831) RGD PMID:16613831 MGI:MGI:3624179 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:1856276 (MGI:MGI:1352305|PMID:10625551) RGD PMID:10625551 MGI:MGI:1352305 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Gsx2 GS homeobox 2 ISO MGI:MGI:2150162 (MGI:MGI:1926244|PMID:11060228), (MGI:MGI:1928687|PMID:11124115), (MGI:MGI:3838261|PMID:18701439) RGD PMID:11060228, PMID:11124115, PMID:18701439 MGI:MGI:1926244, MGI:MGI:1928687, MGI:MGI:3838261 NCBI chr14:35,650,985...35,652,709
Ensembl chr14:35,650,985...35,652,709
JBrowse link
G Nkx2-1 NK2 homeobox 1 IEA
ISO
GO_REF:0000107
MGI:MGI:1857494 (MGI:MGI:1339462|PMID:10393115), (MGI:MGI:1928567|PMID:11163262), (MGI:MGI:2157787|PMID:11830575)
Ensembl
RGD
PMID:10393115, PMID:11163262, PMID:11830575 GO_REF:0000107, MGI:MGI:1339462, MGI:MGI:1928567, MGI:MGI:2157787 NCBI chr 6:77,418,096...77,423,383
Ensembl chr 6:77,418,096...77,421,286
JBrowse link
G Pax6 paired box 6 IEA
ISO
GO_REF:0000107
MGI:MGI:1856155|MGI:MGI:1856158 (MGI:MGI:1913185|PMID:11050125), (MGI:MGI:1928687|PMID:11124115), (MGI:MGI:3838261|PMID:18701439), (MGI:MGI:5662366|PMID:24528677)
Ensembl
RGD
PMID:11050125, PMID:11124115, PMID:18701439, PMID:24528677 GO_REF:0000107, MGI:MGI:1913185, MGI:MGI:1928687, MGI:MGI:3838261, MGI:MGI:5662366 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Six3 SIX homeobox 3 ISO (PMID:18791198) RGD PMID:18791198 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B ISO MGI:MGI:2152544 (MGI:MGI:4367927|PMID:19732765) RGD PMID:19732765 MGI:MGI:4367927 NCBI chr 3:52,286,794...52,361,060
Ensembl chr 3:52,286,794...52,361,060
JBrowse link
negative regulation of determination of dorsal identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddit3 DNA-damage inducible transcript 3 ISO
IEA
(PMID:16434966)
GO_REF:0000107
(MGI:MGI:4821075|PMID:16434966)
RGD
Ensembl
PMID:16434966 GO_REF:0000107, MGI:MGI:4821075 NCBI chr 7:70,578,564...70,585,074
Ensembl chr 7:70,580,198...70,585,084
JBrowse link
G Sostdc1 sclerostin domain containing 1 ISO (PMID:15020244) RGD PMID:15020244 NCBI chr 6:55,812,820...55,816,994
Ensembl chr 6:55,812,747...55,817,066
JBrowse link
negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk20 cyclin-dependent kinase 20 ISO
IEA
MGI:MGI:108075|MGI:MGI:99833 (MGI:MGI:5912686|PMID:28817564)
GO_REF:0000107
RGD
Ensembl
PMID:28817564 GO_REF:0000107, MGI:MGI:5912686 NCBI chr17:1,935,900...1,942,867
Ensembl chr17:1,936,163...1,942,865
JBrowse link
G Gpr161 G protein-coupled receptor 161 ISO (MGI:MGI:5468365|PMID:23332756) RGD PMID:23332756 MGI:MGI:5468365 NCBI chr13:83,530,389...83,576,117
Ensembl chr13:83,531,018...83,571,505
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha ISO
IEA
MGI:MGI:97760 (MGI:MGI:5308523|PMID:22007132)
GO_REF:0000107
RGD
Ensembl
PMID:22007132 GO_REF:0000107, MGI:MGI:5308523 NCBI chr19:25,095,089...25,118,869
Ensembl chr19:25,095,089...25,118,860
JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta ISO MGI:MGI:97592 (MGI:MGI:5308523|PMID:22007132) RGD PMID:22007132 MGI:MGI:5308523 NCBI chr 2:252,602,197...252,691,886
Ensembl chr 2:252,605,307...252,691,886
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:MGI:4840420 (MGI:MGI:4355593|PMID:19684112) RGD PMID:19684112 MGI:MGI:4355593 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 ISO MGI:MGI:4129326 (MGI:MGI:5298450|PMID:21945076) RGD PMID:21945076 MGI:MGI:5298450 NCBI chr 9:98,621,499...98,658,223
Ensembl chr 9:98,621,506...98,656,901
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:MGI:2388066 (MGI:MGI:3844764|PMID:19334287) RGD PMID:19334287 MGI:MGI:3844764 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ift122 intraflagellar transport 122 ISO (MGI:MGI:4888042|PMID:21209331) RGD PMID:21209331 MGI:MGI:4888042 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Rfx4 regulatory factor X4 ISO
IBA
MGI:MGI:3799278 (MGI:MGI:5430880|PMID:19887680)
PMID:21873635
RGD PMID:19887680, PMID:21873635 MGI:MGI:5430880, RGD:13792537 NCBI chr 7:25,831,358...25,909,976
Ensembl chr 7:25,808,419...25,907,849
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:MGI:2388066 (MGI:MGI:3841503|PMID:19286674) RGD PMID:19286674 MGI:MGI:3841503 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 IDA RGD PMID:9566905 RGD:68736 NCBI chr10:97,212,483...97,238,824
Ensembl chr10:97,212,432...97,239,642
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 IEA
ISO
GO_REF:0000107
(PMID:9192640)
Ensembl
RGD
PMID:9192640 GO_REF:0000107 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
positive regulation of determination of dorsal identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 ISO
IEA
(PMID:19506109)
GO_REF:0000107
RGD
Ensembl
PMID:19506109 GO_REF:0000107 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Ctnnb1 catenin beta 1 ISO
IEA
(MGI:MGI:3797993|PMID:18316368)
GO_REF:0000107
RGD
Ensembl
PMID:18316368 GO_REF:0000107, MGI:MGI:3797993 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISO (MGI:MGI:3797993|PMID:18316368) RGD PMID:18316368 MGI:MGI:3797993 NCBI chr16:9,620,854...9,709,342
Ensembl chr16:9,625,177...9,709,347
JBrowse link
positive regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gorab golgin, RAB6-interacting ISO (MGI:MGI:5766823|PMID:26967474) RGD PMID:26967474 MGI:MGI:5766823 NCBI chr13:81,682,207...81,698,827
Ensembl chr13:81,682,018...81,698,833
JBrowse link
regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk20 cyclin-dependent kinase 20 ISO MGI:MGI:95728|MGI:MGI:95729 (MGI:MGI:5912686|PMID:28817564) RGD PMID:28817564 MGI:MGI:5912686 NCBI chr17:1,935,900...1,942,867
Ensembl chr17:1,936,163...1,942,865
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:MGI:2145349 (MGI:MGI:5912686|PMID:28817564) RGD PMID:28817564 MGI:MGI:5912686 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO
IEA
MGI:MGI:2145349 (MGI:MGI:5912686|PMID:28817564)
GO_REF:0000107
RGD
Ensembl
PMID:28817564 GO_REF:0000107, MGI:MGI:5912686 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Mks1 MKS transition zone complex subunit 1 ISO
IEA
MGI:MGI:4887578 (MGI:MGI:4868517|PMID:21045211)
GO_REF:0000107
RGD
Ensembl
PMID:21045211 GO_REF:0000107, MGI:MGI:4868517 NCBI chr10:75,149,814...75,160,481
Ensembl chr10:75,149,814...75,160,480
JBrowse link
regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Evx1 even-skipped homeobox 1 ISO MGI:MGI:2182858 (MGI:MGI:2136555|PMID:11239430) RGD PMID:11239430 MGI:MGI:2136555 NCBI chr 4:82,370,829...82,374,313
Ensembl chr 4:82,370,997...82,375,374
JBrowse link
G Nkx6-1 NK6 homeobox 1 ISO MGI:MGI:2386119 (MGI:MGI:2150481|PMID:11567614) RGD PMID:11567614 MGI:MGI:2150481 NCBI chr14:9,555,264...9,562,197
Ensembl chr14:9,555,264...9,562,189
JBrowse link
G Nkx6-2 NK6 homeobox 2 ISO MGI:MGI:2651850 (MGI:MGI:2150481|PMID:11567614) RGD PMID:11567614 MGI:MGI:2150481 NCBI chr 1:211,922,389...211,923,929
Ensembl chr 1:211,922,389...211,923,929
JBrowse link
G Pax6 paired box 6 ISO
IEA
MGI:MGI:1856155 (MGI:MGI:894150|PMID:9230312)
GO_REF:0000107
RGD
Ensembl
PMID:9230312 GO_REF:0000107, MGI:MGI:894150 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 ISO MGI:MGI:2442827|MGI:MGI:95729 (MGI:MGI:3709667|PMID:17395647), (MGI:MGI:4439200|PMID:20159594) RGD PMID:17395647, PMID:20159594 MGI:MGI:3709667, MGI:MGI:4439200 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:2442827|MGI:MGI:95728 (MGI:MGI:3709667|PMID:17395647), (MGI:MGI:4439200|PMID:20159594) RGD PMID:17395647, PMID:20159594 MGI:MGI:3709667, MGI:MGI:4439200 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Ift122 intraflagellar transport 122 ISO MGI:MGI:2443231 (MGI:MGI:5428054|PMID:22689656) RGD PMID:22689656 MGI:MGI:5428054 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Ptch1 patched 1 ISO MGI:MGI:1857447 (MGI:MGI:4355593|PMID:19684112) RGD PMID:19684112 MGI:MGI:4355593 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 ISO MGI:MGI:95728|MGI:MGI:95729 (MGI:MGI:4439200|PMID:20159594) RGD PMID:20159594 MGI:MGI:4439200 NCBI chr20:37,463,879...37,701,268
Ensembl chr20:37,465,278...37,700,937
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:MGI:3664273 (MGI:MGI:3841513|PMID:19223390) RGD PMID:19223390 MGI:MGI:3841513 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
G Wdr19 WD repeat domain 19 ISO MGI:MGI:1932386|MGI:MGI:5315748 (MGI:MGI:5428054|PMID:22689656) RGD PMID:22689656 MGI:MGI:5428054 NCBI chr14:44,705,012...44,767,120
Ensembl chr14:44,705,012...44,767,120
JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 ISO MGI:MGI:95729 (MGI:MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:MGI:3051712 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:95728 (MGI:MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:MGI:3051712 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:MGI:4840420 (MGI:MGI:4355593|PMID:19684112) RGD PMID:19684112 MGI:MGI:4355593 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 ISO MGI:MGI:95729 (MGI:MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:MGI:3051712 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:95728 (MGI:MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:MGI:3051712 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:MGI:4840420 (MGI:MGI:4355593|PMID:19684112) RGD PMID:19684112 MGI:MGI:4355593 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smo smoothened, frizzled class receptor IEA
ISO
GO_REF:0000107
MGI:MGI:2176255 (MGI:MGI:3841503|PMID:19286674), (MGI:MGI:4888042|PMID:21209331)
Ensembl
RGD
PMID:19286674, PMID:21209331 GO_REF:0000107, MGI:MGI:3841503, MGI:MGI:4888042 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
spinal cord dorsal/ventral patterning term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fuz fuzzy planar cell polarity protein ISO MGI:MGI:4346364 (MGI:MGI:5052192|PMID:21761479) RGD PMID:21761479 MGI:MGI:5052192 NCBI chr 1:100,891,832...100,896,811
Ensembl chr 1:100,891,866...100,896,807
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:MGI:1857509|MGI:MGI:2158472|MGI:MGI:95729|MGI:MGI:99833 (MGI:MGI:2154468|PMID:11748151), (MGI:MGI:3051712|PMID:15215207), (MGI:MGI:3612806|PMID:16364285) RGD PMID:11748151, PMID:15215207, PMID:16364285 MGI:MGI:2154468, MGI:MGI:3051712, MGI:MGI:3612806 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:95728|MGI:MGI:99833 (MGI:MGI:3051712|PMID:15215207), (MGI:MGI:3612806|PMID:16364285) RGD PMID:15215207, PMID:16364285 MGI:MGI:3051712, MGI:MGI:3612806 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Ift88 intraflagellar transport 88 ISO MGI:MGI:1859153 (MGI:MGI:5052192|PMID:21761479) RGD PMID:21761479 MGI:MGI:5052192 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
JBrowse link
G Intu inturned planar cell polarity protein ISO
IEA
MGI:MGI:4441401 (MGI:MGI:5052192|PMID:21761479)
GO_REF:0000107
RGD
Ensembl
PMID:21761479 GO_REF:0000107, MGI:MGI:5052192 NCBI chr 2:127,589,325...127,611,705
Ensembl chr 2:127,459,012...127,525,437
JBrowse link
G Rab23 RAB23, member RAS oncogene family ISO MGI:MGI:2137533|MGI:MGI:2682064|MGI:MGI:95728|MGI:MGI:95729 (MGI:MGI:2679893|PMID:14603322), (MGI:MGI:3577662|PMID:15755804), (MGI:MGI:3612806|PMID:16364285) RGD PMID:14603322, PMID:15755804, PMID:16364285 MGI:MGI:2679893, MGI:MGI:3577662, MGI:MGI:3612806 NCBI chr 9:38,469,784...38,496,185
Ensembl chr 9:38,470,298...38,495,176
JBrowse link
G Shh sonic hedgehog signaling molecule IDA
IEA
ISO
PMID:9230312
GO_REF:0000107
MGI:MGI:1857796 (MGI:MGI:2154468|PMID:11748151)
Ensembl
RGD
PMID:11748151, PMID:9230312 GO_REF:0000107, MGI:MGI:2154468, RGD:8553789 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:MGI:3619046 (MGI:MGI:3616741|PMID:16459298) RGD PMID:16459298 MGI:MGI:3616741 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO
ISS
(MGI:MGI:3587461|PMID:16020526)
GO_REF:0000024
RGD
UniProt
PMID:16020526 GO_REF:0000024, MGI:MGI:3587461 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Dll4 delta like canonical Notch ligand 4 ISO UniProtKB:Q8K3Q3 (PMID:17728344) RGD PMID:17728344 NCBI chr 3:111,135,011...111,146,746
Ensembl chr 3:111,135,021...111,145,986
JBrowse link
G Foxn4 forkhead box N4 ISO (MGI:MGI:3587461|PMID:16020526), (MGI:MGI:3765356|PMID:17728344) RGD PMID:16020526, PMID:17728344 MGI:MGI:3587461, MGI:MGI:3765356 NCBI chr12:48,101,012...48,121,281
Ensembl chr12:48,101,673...48,121,270
JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-2 NK2 homeobox 2 ISO MGI:MGI:1932100 (MGI:MGI:1334824|PMID:10217145) RGD PMID:10217145 MGI:MGI:1334824 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 ISO MGI:MGI:2182329 (MGI:MGI:2136554|PMID:11239429) RGD PMID:11239429 MGI:MGI:2136554 NCBI chr 1:104,969,218...104,973,648
Ensembl chr 1:104,969,218...104,973,648
JBrowse link
G Dmrt3 doublesex and mab-3 related transcription factor 3 ISO MGI:MGI:4420993 (MGI:MGI:5435948|PMID:22932389) RGD PMID:22932389 MGI:MGI:5435948 NCBI chr 1:243,589,607...243,602,926
Ensembl chr 1:243,589,607...243,602,926
JBrowse link
G Lhx3 LIM homeobox 3 ISO (MGI:MGI:4356383|PMID:19666821) RGD PMID:19666821 MGI:MGI:4356383 NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
JBrowse link
G Shh sonic hedgehog signaling molecule IDA PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Sox1 SRY-box transcription factor 1 ISO MGI:MGI:3653406 (MGI:MGI:4834949|PMID:20844123) RGD PMID:20844123 MGI:MGI:4834949
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad2 SMAD family member 2 ISO (PMID:9436979) RGD PMID:9436979 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Smad6 SMAD family member 6 ISO (PMID:9436979) RGD PMID:9436979 NCBI chr 8:68,897,746...68,967,221
Ensembl chr 8:68,898,296...68,966,108
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    multicellular organismal process 9055
      pattern specification process 496
        regionalization 392
          dorsal/ventral pattern formation 105
            determination of dorsal identity + 9
            determination of dorsal/ventral asymmetry + 10
            determination of ventral identity 1
            dorsal/ventral axis specification + 13
            dorsal/ventral neural tube patterning + 31
            dorsal/ventral pattern formation, imaginal disc + 0
            embryonic heart tube dorsal/ventral pattern formation 0
            forebrain dorsal/ventral pattern formation 7
            spinal cord dorsal/ventral patterning + 25
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          pattern specification process 496
            regionalization 392
              dorsal/ventral pattern formation 105
                determination of dorsal identity + 9
                determination of dorsal/ventral asymmetry + 10
                determination of ventral identity 1
                dorsal/ventral axis specification + 13
                dorsal/ventral neural tube patterning + 31
                dorsal/ventral pattern formation, imaginal disc + 0
                embryonic heart tube dorsal/ventral pattern formation 0
                forebrain dorsal/ventral pattern formation 7
                spinal cord dorsal/ventral patterning + 25
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.