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ONTOLOGY REPORT - ANNOTATIONS


Term:histone monoubiquitination
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Accession:GO:0010390 term browser browse the term
Definition:The modification of histones by addition of a single ubiquitin group.


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histone monoubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN7L3 ataxin 7 like 3 IEA Ensembl GO_REF:0000107 NCBI chr 9:19,196,688...19,204,724
Ensembl chr 9:19,196,693...19,202,447
JBrowse link
G CDC73 cell division cycle 73 IEA Ensembl GO_REF:0000107 NCBI chr38:5,826,209...5,937,930
Ensembl chr38:5,805,916...5,938,111
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component IEA Ensembl GO_REF:0000107 NCBI chr21:33,915,804...33,949,597
Ensembl chr21:33,915,772...33,949,103
JBrowse link
G DTX3L deltex E3 ubiquitin ligase 3L IEA Ensembl GO_REF:0000107 NCBI chr33:25,676,686...25,684,270
Ensembl chr33:25,677,076...25,684,175
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component IEA Ensembl GO_REF:0000107 NCBI chr30:17,614,502...17,651,715
Ensembl chr30:17,598,076...17,651,290
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component IEA Ensembl GO_REF:0000107 NCBI chr 1:113,828,219...113,832,747
Ensembl chr 1:113,828,007...113,832,735
JBrowse link
G RAG1 recombination activating 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:31,628,231...31,639,980
Ensembl chr18:31,630,737...31,641,660
JBrowse link
G RNF20 ring finger protein 20 IEA UniProtKB GO_REF:0000104 NCBI chr11:58,239,245...58,266,637
Ensembl chr11:58,239,313...58,265,866
JBrowse link
G RNF40 ring finger protein 40 IEA UniProtKB GO_REF:0000104 NCBI chr 6:17,402,022...17,414,494
Ensembl chr 6:17,402,908...17,414,362
JBrowse link
G UBE2E1 ubiquitin conjugating enzyme E2 E1 ISO (PMID:16307923) UniProtKB PMID:16307923 NCBI chr23:19,863,136...19,937,272
Ensembl chr23:19,863,253...19,937,247
JBrowse link
G UHRF1 ubiquitin like with PHD and ring finger domains 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:54,858,673...54,889,769
Ensembl chr20:54,859,947...54,889,907
JBrowse link
G WAC WW domain containing adaptor with coiled-coil ISO (PMID:21329877) UniProtKB PMID:21329877 NCBI chr 2:17,504,949...17,588,037 JBrowse link
histone H2A monoubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCOR BCL6 corepressor IEA Ensembl GO_REF:0000107 NCBI chr  X:34,621,314...34,735,502
Ensembl chr  X:34,621,886...34,645,766
JBrowse link
G CUL4B cullin 4B IEA Ensembl GO_REF:0000107 NCBI chr  X:92,489,981...92,538,199
Ensembl chr  X:92,491,114...92,537,672
JBrowse link
G DDB1 damage specific DNA binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr18:55,064,720...55,097,623
Ensembl chr18:55,064,729...55,097,627
JBrowse link
G DDB2 damage specific DNA binding protein 2 IEA Ensembl GO_REF:0000107 NCBI chr18:42,354,201...42,378,463
Ensembl chr18:42,354,572...42,377,947
JBrowse link
G KDM2B lysine demethylase 2B IEA Ensembl GO_REF:0000107 NCBI chr26:7,625,857...7,746,049
Ensembl chr26:7,598,931...7,745,113
JBrowse link
G PCGF1 polycomb group ring finger 1 ISO (PMID:16943429) UniProtKB PMID:16943429 NCBI chr17:48,633,207...48,642,435
Ensembl chr17:48,633,332...48,635,554
JBrowse link
G RING1 ring finger protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:2,671,578...2,675,488
Ensembl chr12:2,671,578...2,675,488
JBrowse link
G RNF168 ring finger protein 168 IEA Ensembl GO_REF:0000107 NCBI chr33:29,542,209...29,575,127
Ensembl chr33:29,539,182...29,628,248
JBrowse link
G RNF2 ring finger protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:18,240,672...18,283,091
Ensembl chr 7:18,236,115...18,281,387
JBrowse link
G RYBP RING1 and YY1 binding protein IEA Ensembl GO_REF:0000107 NCBI chr20:19,650,936...19,732,987
Ensembl chr20:19,615,426...19,729,474
JBrowse link
G SKP1 S-phase kinase associated protein 1 IEA Ensembl GO_REF:0000107 NCBI chr11:22,352,735...22,366,599
Ensembl chr11:22,352,439...22,364,024
JBrowse link
G TRIM37 tripartite motif containing 37 ISO (MGI:MGI:5613824|PMID:25470042)
(PMID:25470042)
UniProtKB PMID:25470042 MGI:MGI:5613824 NCBI chr 9:33,446,903...33,687,650
Ensembl chr 9:33,446,918...33,687,555
JBrowse link
histone H2A-K119 monoubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMI1 BMI1 proto-oncogene, polycomb ring finger IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:10,818,232...10,828,473
Ensembl chr 2:10,818,232...10,833,613
JBrowse link
G PCGF1 polycomb group ring finger 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:48,633,207...48,642,435
Ensembl chr17:48,633,332...48,635,554
JBrowse link
G PCGF2 polycomb group ring finger 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:23,488,862...23,499,769
Ensembl chr 9:23,488,857...23,499,549
JBrowse link
G PCGF3 polycomb group ring finger 3 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 3:91,673,424...91,708,751
Ensembl chr 3:91,676,496...91,708,754
JBrowse link
G PCGF5 polycomb group ring finger 5 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr28:5,821,278...5,889,382
Ensembl chr28:5,821,307...5,883,795
JBrowse link
G PCGF6 polycomb group ring finger 6 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr28:15,697,707...15,733,177
Ensembl chr28:15,605,040...15,733,097
JBrowse link
G RNF2 ring finger protein 2 IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr 7:18,240,672...18,283,091
Ensembl chr 7:18,236,115...18,281,387
JBrowse link
G SCML2 Scm polycomb group protein like 2 ISO (MGI:MGI:5645866|PMID:25634095) MGI PMID:25634095 MGI:MGI:5645866 NCBI chr  X:14,334,769...14,436,614
Ensembl chr  X:14,335,013...14,437,176
JBrowse link
G TRIM37 tripartite motif containing 37 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 9:33,446,903...33,687,650
Ensembl chr 9:33,446,918...33,687,555
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16187
    cellular process 15465
      cellular component organization or biogenesis 6050
        cellular component organization 5882
          chromatin organization 715
            covalent chromatin modification 488
              histone modification 474
                histone ubiquitination 54
                  histone monoubiquitination 30
                    histone H2A monoubiquitination + 18
Path 2
Term Annotations click to browse term
  biological_process 16187
    metabolic process 10658
      organic substance metabolic process 10133
        organonitrogen compound metabolic process 6209
          protein metabolic process 5384
            cellular protein metabolic process 4816
              cellular protein modification process 3744
                protein modification by small protein conjugation or removal 899
                  protein modification by small protein conjugation 773
                    protein ubiquitination 723
                      histone ubiquitination 54
                        histone monoubiquitination 30
                          histone H2A monoubiquitination + 18
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.