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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of gastrulation
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Accession:GO:0010470 term browser browse the term
Definition:Any process that modulates the rate or extent of gastrulation. Gastrulation is the complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals.


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regulation of gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 ISO (PMID:23940118) UniProtKB PMID:23940118 NCBI chrNW_004955459:8,382,671...8,628,048 JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 ISO (PMID:23940118) UniProtKB PMID:23940118 NCBI chrNW_004955421:767,648...957,160 JBrowse link
G Crb2 crumbs cell polarity complex component 2 ISO (MGI:MGI:5700252|PMID:26496195) UniProtKB PMID:26496195 MGI:MGI:5700252 NCBI chrNW_004955419:4,604,883...4,626,675 JBrowse link
G Dag1 dystroglycan 1 ISO (PMID:23940118) UniProtKB PMID:23940118 NCBI chrNW_004955532:1,446,553...1,465,310 JBrowse link
G Hnf4a hepatocyte nuclear factor 4 alpha ISO (MGI:MGI:69170|PMID:7958910) MGI PMID:7958910 MGI:MGI:69170 NCBI chrNW_004955445:12,925,248...12,962,501 JBrowse link
G Nodal nodal growth differentiation factor ISO (MGI:MGI:4430444|PMID:20040491) MGI PMID:20040491 MGI:MGI:4430444 NCBI chrNW_004955437:20,828,448...20,835,486 JBrowse link
G Phldb1 pleckstrin homology like domain family B member 1 ISO (PMID:23940118) UniProtKB PMID:23940118 NCBI chrNW_004955412:19,754,997...19,800,984 JBrowse link
G Phldb2 pleckstrin homology like domain family B member 2 ISO (PMID:23940118) UniProtKB PMID:23940118 NCBI chrNW_004955427:12,284,100...12,385,755 JBrowse link
G Poglut1 protein O-glucosyltransferase 1 ISO (MGI:MGI:5700252|PMID:26496195) UniProtKB PMID:26496195 MGI:MGI:5700252 NCBI chrNW_004955427:19,188,512...19,206,050 JBrowse link
G Tgif1 TGFB induced factor homeobox 1 ISO (MGI:MGI:4430444|PMID:20040491) MGI PMID:20040491 MGI:MGI:4430444 NCBI chrNW_004955402:7,130,809...7,138,945 JBrowse link
G Tgif2 TGFB induced factor homeobox 2 ISO (MGI:MGI:4430444|PMID:20040491) MGI PMID:20040491 MGI:MGI:4430444 NCBI chrNW_004955422:25,024,359...25,042,568 JBrowse link
negative regulation of ectodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzd7 frizzled class receptor 7 ISO (PMID:18681827) BHF-UCL PMID:18681827 NCBI chrNW_004955457:12,729,277...12,733,057 JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain ISO (PMID:23154389) UniProtKB PMID:23154389 NCBI chrNW_004955513:3,533,612...3,660,605 JBrowse link
G Col5a2 collagen type V alpha 2 chain ISO (PMID:23154389) UniProtKB PMID:23154389 NCBI chrNW_004955403:9,562,401...9,703,828 JBrowse link
negative regulation of heterotypic cell-cell adhesion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing ISO (PMID:10604883) BHF-UCL PMID:10604883 NCBI chrNW_004955420:20,911,181...20,922,992 JBrowse link
G Apoa1 apolipoprotein A1 ISO (PMID:21571275) BHF-UCL PMID:21571275 NCBI chrNW_004955412:18,170,331...18,172,298 JBrowse link
G Il10 interleukin 10 ISO (MGI:MGI:5796069|PMID:26808574) BHF-UCL PMID:26808574 MGI:MGI:5796069 NCBI chrNW_004955406:42,307,789...42,312,255 JBrowse link
G Il1rn interleukin 1 receptor antagonist ISO (PMID:2139180) BHF-UCL PMID:2139180 NCBI chrNW_004955470:1,145,022...1,159,413 JBrowse link
G Klf4 Kruppel like factor 4 ISO (PMID:20551324) BHF-UCL PMID:20551324 NCBI chrNW_004955419:19,280,311...19,284,097 JBrowse link
G Map2k5 mitogen-activated protein kinase kinase 5 ISO PMID:20551324 BHF-UCL PMID:20551324 RGD:8553940 NCBI chrNW_004955450:8,207,577...8,458,258 JBrowse link
G Mapk7 mitogen-activated protein kinase 7 ISO (PMID:20551324) BHF-UCL PMID:20551324 NCBI chrNW_004955467:381,801...387,078 JBrowse link
G Mbp myelin basic protein ISO (PMID:22524708) CAFA PMID:22524708 NCBI chrNW_004955402:60,324,060...60,448,926 JBrowse link
G Myadm myeloid associated differentiation marker ISO (PMID:23264465) UniProtKB PMID:23264465 NCBI chrNW_004955604:280,977...284,381 JBrowse link
G Wnk1 WNK lysine deficient protein kinase 1 ISO (PMID:27400149) BHF-UCL PMID:27400149 NCBI chrNW_004955454:6,228,492...6,358,690 JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (PMID:20559569) BHF-UCL PMID:20559569 NCBI chrNW_004955425:7,353,964...7,357,599 JBrowse link
G Sfrp2 secreted frizzled related protein 2 ISO (MGI:MGI:3711603|PMID:17462603) MGI PMID:17462603 MGI:MGI:3711603 NCBI chrNW_004955471:8,103,937...8,112,596 JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102008188 core histone macro-H2A.1 ISO (PMID:23595991) UniProt PMID:23595991 NCBI chrNW_004955408:30,497,531...30,550,095 JBrowse link
positive regulation of gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 ISO (MGI:MGI:2157654|PMID:11291865) UniProtKB PMID:11291865 MGI:MGI:2157654 NCBI chrNW_004955415:29,982,940...29,987,093 JBrowse link
G Lhx1 LIM homeobox 1 ISO (MGI:MGI:2157654|PMID:11291865) UniProtKB PMID:11291865 MGI:MGI:2157654 NCBI chrNW_004955451:1,037,936...1,048,501 JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO (PMID:21281489) UniProtKB PMID:21281489 NCBI chrNW_004955469:1,954,470...1,961,344 JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO (MGI:MGI:5009762|PMID:21281489) UniProtKB PMID:21281489 MGI:MGI:5009762 NCBI chrNW_004955417:14,502,450...14,510,015 JBrowse link
G Otx2 orthodenticle homeobox 2 ISO (MGI:MGI:2157654|PMID:11291865) UniProtKB PMID:11291865 MGI:MGI:2157654 NCBI chrNW_004955466:10,755,143...10,764,957 JBrowse link
G Scx scleraxis bHLH transcription factor ISO (MGI:MGI:1343990|PMID:10477299) UniProtKB PMID:10477299 MGI:MGI:1343990 NCBI chrNW_004955454:2,886,981...2,888,829 JBrowse link
G Tenm4 teneurin transmembrane protein 4 ISO (MGI:MGI:3531238|PMID:15489520) UniProtKB PMID:15489520 MGI:MGI:3531238 NCBI chrNW_004955414:12,649,128...13,364,523 JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja1 gap junction protein alpha 1 ISO (PMID:30599359) ARUK-UCL PMID:30599359 NCBI chrNW_004955436:3,612,533...3,618,095 JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt3a Wnt family member 3A ISO (PMID:20559569) BHF-UCL PMID:20559569 NCBI chrNW_004955581:351,375...382,541 JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (PMID:20559569) BHF-UCL PMID:20559569 NCBI chrNW_004955425:7,353,964...7,357,599 JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A ISO (MGI:MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:MGI:3702797 NCBI chrNW_004955510:5,812,571...5,936,312 JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 ISO (MGI:MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:MGI:3702797 NCBI chrNW_004955463:14,013,247...14,064,354 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11860
    developmental process 5598
      anatomical structure morphogenesis 2494
        regulation of anatomical structure morphogenesis 1012
          regulation of gastrulation 38
            negative regulation of gastrulation + 5
            positive regulation of gastrulation + 10
            regulation of apical constriction involved in ventral furrow formation + 0
            regulation of cell-cell adhesion involved in gastrulation + 10
            regulation of convergent extension involved in gastrulation + 0
            regulation of ectodermal cell fate specification + 1
            regulation of endodermal cell differentiation + 4
            regulation of epiboly involved in gastrulation with mouth forming second + 0
            regulation of mesoderm formation + 6
            regulation of transforming growth factor beta receptor signaling pathway involved in primitive streak formation + 0
Path 2
Term Annotations click to browse term
  biological_process 11860
    developmental process 5598
      anatomical structure development 5237
        multicellular organism development 4801
          embryo development 1169
            embryonic morphogenesis 626
              gastrulation 176
                regulation of gastrulation 38
                  negative regulation of gastrulation + 5
                  positive regulation of gastrulation + 10
                  regulation of apical constriction involved in ventral furrow formation + 0
                  regulation of cell-cell adhesion involved in gastrulation + 10
                  regulation of convergent extension involved in gastrulation + 0
                  regulation of ectodermal cell fate specification + 1
                  regulation of endodermal cell differentiation + 4
                  regulation of epiboly involved in gastrulation with mouth forming second + 0
                  regulation of mesoderm formation + 6
                  regulation of transforming growth factor beta receptor signaling pathway involved in primitive streak formation + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.