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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of gastrulation
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Accession:GO:0010470 term browser browse the term
Definition:Any process that modulates the rate or extent of gastrulation. Gastrulation is the complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals.


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regulation of gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLASP1 cytoplasmic linker associated protein 1 IMP (PMID:23940118) UniProtKB PMID:23940118 NCBI chr 2:121,337,776...121,649,462
Ensembl chr 2:121,337,776...121,649,476
Ensembl chr 2:121,337,776...121,649,476
JBrowse link
G CLASP2 cytoplasmic linker associated protein 2 IMP (PMID:23940118) UniProtKB PMID:23940118 NCBI chr 3:33,496,245...33,718,356
Ensembl chr 3:33,496,245...33,718,356
JBrowse link
G CRB2 crumbs cell polarity complex component 2 ISS UniProtKB GO_REF:0000024 NCBI chr 9:123,354,065...123,380,326
Ensembl chr 9:123,356,170...123,380,324
JBrowse link
G DAG1 dystroglycan 1 IMP (PMID:23940118) UniProtKB PMID:23940118 NCBI chr 3:49,468,703...49,535,618
Ensembl chr 3:49,468,703...49,535,618
JBrowse link
G HNF4A hepatocyte nuclear factor 4 alpha IEA Ensembl GO_REF:0000107 NCBI chr20:44,355,699...44,434,596
Ensembl chr20:44,355,700...44,434,596
JBrowse link
G NODAL nodal growth differentiation factor IEA Ensembl GO_REF:0000107 NCBI chr10:70,431,936...70,447,951
Ensembl chr10:70,431,936...70,447,951
JBrowse link
G PHLDB1 pleckstrin homology like domain family B member 1 IMP (PMID:23940118) UniProtKB PMID:23940118 NCBI chr11:118,606,296...118,658,028
Ensembl chr11:118,606,440...118,658,031
JBrowse link
G PHLDB2 pleckstrin homology like domain family B member 2 IMP (PMID:23940118) UniProtKB PMID:23940118 NCBI chr 3:111,732,496...111,976,517
Ensembl chr 3:111,732,497...111,976,517
JBrowse link
G POGLUT1 protein O-glucosyltransferase 1 ISS UniProtKB GO_REF:0000024 NCBI chr 3:119,468,955...119,494,708
Ensembl chr 3:119,468,963...119,494,708
JBrowse link
G TGIF1 TGFB induced factor homeobox 1 ISO (MGI:MGI:4430444|PMID:20040491) MGI PMID:20040491 MGI:MGI:4430444 NCBI chr18:3,412,009...3,459,978
Ensembl chr18:3,411,608...3,459,978
JBrowse link
G TGIF2 TGFB induced factor homeobox 2 IEA Ensembl GO_REF:0000107 NCBI chr20:36,573,464...36,593,950
Ensembl chr20:36,573,488...36,593,950
JBrowse link
negative regulation of ectodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FZD7 frizzled class receptor 7 IMP (PMID:18681827) BHF-UCL PMID:18681827 NCBI chr 2:202,033,855...202,038,441
Ensembl chr 2:202,034,587...202,038,445
JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL5A1 collagen type V alpha 1 chain IDA (PMID:23154389) UniProtKB PMID:23154389 NCBI chr 9:134,641,789...134,844,843
Ensembl chr 9:134,641,803...134,844,843
Ensembl chr 9:134,641,803...134,844,843
JBrowse link
G COL5A2 collagen type V alpha 2 chain IDA (PMID:23154389) UniProtKB PMID:23154389 NCBI chr 2:189,031,898...189,225,301
Ensembl chr 2:189,031,898...189,225,312
JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MESP1 mesoderm posterior bHLH transcription factor 1 ISS BHF-UCL GO_REF:0000024 NCBI chr15:89,734,772...89,751,309
Ensembl chr15:89,748,661...89,751,310
JBrowse link
negative regulation of heterotypic cell-cell adhesion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADIPOQ adiponectin, C1Q and collagen domain containing IDA (PMID:10604883) BHF-UCL PMID:10604883 NCBI chr 3:186,842,710...186,858,463
Ensembl chr 3:186,842,704...186,858,463
JBrowse link
G APOA1 apolipoprotein A1 IDA (PMID:21571275) BHF-UCL PMID:21571275 NCBI chr11:116,835,751...116,837,950
Ensembl chr11:116,835,751...116,837,622
Ensembl chr11:116,835,751...116,837,622
JBrowse link
G IL10 interleukin 10 ISS BHF-UCL GO_REF:0000024 NCBI chr 1:206,767,602...206,772,494
Ensembl chr 1:206,767,602...206,774,541
JBrowse link
G IL1RN interleukin 1 receptor antagonist IDA (PMID:2139180) BHF-UCL PMID:2139180 NCBI chr 2:113,099,365...113,134,016
Ensembl chr 2:113,107,214...113,134,016
JBrowse link
G KLF4 Kruppel like factor 4 IDA (PMID:20551324) BHF-UCL PMID:20551324 NCBI chr 9:107,484,852...107,489,769
Ensembl chr 9:107,484,852...107,490,482
JBrowse link
G MAP2K5 mitogen-activated protein kinase kinase 5 ISS (PMID:20551324) BHF-UCL PMID:20551324 NCBI chr15:67,542,685...67,807,114
Ensembl chr15:67,542,703...67,807,117
JBrowse link
G MAPK7 mitogen-activated protein kinase 7 IGI (PMID:20551324) BHF-UCL PMID:20551324 NCBI chr17:19,377,721...19,383,544
Ensembl chr17:19,377,721...19,383,544
JBrowse link
G MBP myelin basic protein IDA (PMID:22524708) CAFA PMID:22524708 NCBI chr18:76,978,833...77,133,708
Ensembl chr18:76,978,827...77,133,683
JBrowse link
G MYADM myeloid associated differentiation marker IDA
IBA
(PMID:23264465)
(PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:23264465 NCBI chr19:53,865,628...53,876,435
Ensembl chr19:53,864,763...53,876,435
JBrowse link
G WNK1 WNK lysine deficient protein kinase 1 IMP (PMID:27400149) BHF-UCL PMID:27400149 NCBI chr12:752,579...911,452
Ensembl chr12:752,579...911,452
JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 IDA (PMID:20559569) BHF-UCL PMID:20559569 NCBI chr10:52,314,281...52,317,657
Ensembl chr10:52,314,281...52,318,042
JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 ISS BHF-UCL GO_REF:0000024 NCBI chr15:89,734,772...89,751,309
Ensembl chr15:89,748,661...89,751,310
JBrowse link
G SFRP2 secreted frizzled related protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 4:153,780,591...153,789,083
Ensembl chr 4:153,780,591...153,789,083
JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MACROH2A1 macroH2A.1 histone IMP (PMID:23595991) UniProt PMID:23595991 NCBI chr 5:135,334,381...135,401,998
Ensembl chr 5:135,333,900...135,399,914
JBrowse link
positive regulation of gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXA2 forkhead box A2 ISS UniProtKB GO_REF:0000024 NCBI chr20:22,580,998...22,585,490
Ensembl chr20:22,581,005...22,585,455
JBrowse link
G LHX1 LIM homeobox 1 ISS UniProtKB GO_REF:0000024 NCBI chr17:36,937,475...36,944,612
Ensembl chr17:36,936,785...36,944,612
JBrowse link
G OSR1 odd-skipped related transcription factor 1 IMP (PMID:21281489) UniProtKB PMID:21281489 NCBI chr 2:19,351,485...19,358,623
Ensembl chr 2:19,351,485...19,358,623
JBrowse link
G OSR2 odd-skipped related transciption factor 2 ISO (MGI:MGI:5009762|PMID:21281489) UniProtKB PMID:21281489 MGI:MGI:5009762 NCBI chr 8:98,944,442...98,952,100
Ensembl chr 8:98,944,403...98,952,104
JBrowse link
G OTX2 orthodenticle homeobox 2 ISS UniProtKB GO_REF:0000024 NCBI chr14:56,799,905...56,810,479
Ensembl chr14:56,799,905...56,816,693
JBrowse link
G RACK1 receptor for activated C kinase 1 ISS UniProtKB GO_REF:0000024 NCBI chr 5:181,236,897...181,243,906
Ensembl chr 5:181,236,897...181,248,096
JBrowse link
G SCX scleraxis bHLH transcription factor ISS UniProtKB GO_REF:0000024 NCBI chr 8:144,265,060...144,268,483
Ensembl chr 8:144,266,453...144,268,481
JBrowse link
G TENM4 teneurin transmembrane protein 4 ISS UniProtKB GO_REF:0000024 NCBI chr11:78,652,829...79,441,030
Ensembl chr11:78,652,829...79,441,030
JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GJA1 gap junction protein alpha 1 IMP (PMID:30599359) ARUK-UCL PMID:30599359 NCBI chr 6:121,435,646...121,449,727
Ensembl chr 6:121,435,595...121,449,727
JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT3A Wnt family member 3A IDA (PMID:20559569) BHF-UCL PMID:20559569 NCBI chr 1:228,006,998...228,067,113
Ensembl chr 1:228,006,998...228,061,271
JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 IDA (PMID:20559569) BHF-UCL PMID:20559569 NCBI chr10:52,314,281...52,317,657
Ensembl chr10:52,314,281...52,318,042
JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMPR1A bone morphogenetic protein receptor type 1A IEA Ensembl GO_REF:0000107 NCBI chr10:86,755,786...86,927,969
Ensembl chr10:86,756,601...86,932,838
Ensembl chr10:86,756,601...86,932,838
JBrowse link
G FGFR1 fibroblast growth factor receptor 1 IEA Ensembl GO_REF:0000107 NCBI chr 8:38,411,143...38,468,635
Ensembl chr 8:38,400,215...38,468,834
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18650
    developmental process 7452
      anatomical structure morphogenesis 3088
        regulation of anatomical structure morphogenesis 1241
          regulation of gastrulation 40
            negative regulation of gastrulation + 6
            positive regulation of gastrulation + 11
            regulation of apical constriction involved in ventral furrow formation + 0
            regulation of cell-cell adhesion involved in gastrulation + 10
            regulation of convergent extension involved in gastrulation + 0
            regulation of ectodermal cell fate specification + 1
            regulation of endodermal cell differentiation + 5
            regulation of epiboly involved in gastrulation with mouth forming second + 0
            regulation of mesoderm formation + 7
            regulation of transforming growth factor beta receptor signaling pathway involved in primitive streak formation + 0
Path 2
Term Annotations click to browse term
  biological_process 18650
    developmental process 7452
      anatomical structure development 6856
        multicellular organism development 6332
          embryo development 1321
            embryonic morphogenesis 698
              gastrulation 206
                regulation of gastrulation 40
                  negative regulation of gastrulation + 6
                  positive regulation of gastrulation + 11
                  regulation of apical constriction involved in ventral furrow formation + 0
                  regulation of cell-cell adhesion involved in gastrulation + 10
                  regulation of convergent extension involved in gastrulation + 0
                  regulation of ectodermal cell fate specification + 1
                  regulation of endodermal cell differentiation + 5
                  regulation of epiboly involved in gastrulation with mouth forming second + 0
                  regulation of mesoderm formation + 7
                  regulation of transforming growth factor beta receptor signaling pathway involved in primitive streak formation + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.