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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of gastrulation
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Accession:GO:0010470 term browser browse the term
Definition:Any process that modulates the rate or extent of gastrulation. Gastrulation is the complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals.


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regulation of gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 CLIP associating protein 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 1:118,389,058...118,609,462
Ensembl chr 1:118,389,058...118,612,678
JBrowse link
G Clasp2 CLIP associating protein 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 9:113,740,077...113,919,697
Ensembl chr 9:113,741,473...113,919,682
JBrowse link
G Crb2 crumbs family member 2 IMP (MGI:MGI:5700252|PMID:26496195) UniProtKB PMID:26496195 MGI:MGI:5700252 NCBI chr 2:37,776,225...37,799,103
Ensembl chr 2:37,776,249...37,799,103
JBrowse link
G Dag1 dystroglycan 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 9:108,204,861...108,263,977
Ensembl chr 9:108,204,634...108,263,958
JBrowse link
G Hnf4a hepatic nuclear factor 4, alpha IMP (MGI:MGI:69170|PMID:7958910) MGI PMID:7958910 MGI:MGI:69170 NCBI chr 2:163,506,811...163,572,907
Ensembl chr 2:163,506,808...163,572,910
JBrowse link
G Nodal nodal IGI (MGI:MGI:4430444|PMID:20040491) MGI PMID:20040491 MGI:MGI:4430444 NCBI chr10:61,417,972...61,425,338
Ensembl chr10:61,417,972...61,425,338
JBrowse link
G Phldb1 pleckstrin homology like domain, family B, member 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 9:44,686,308...44,735,248
Ensembl chr 9:44,686,304...44,735,198
JBrowse link
G Phldb2 pleckstrin homology like domain, family B, member 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr16:45,746,230...45,953,598
Ensembl chr16:45,746,243...45,953,598
JBrowse link
G Poglut1 protein O-glucosyltransferase 1 IMP (MGI:MGI:5700252|PMID:26496195) UniProtKB PMID:26496195 MGI:MGI:5700252 NCBI chr16:38,525,058...38,550,257
Ensembl chr16:38,525,137...38,550,258
JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 IGI (MGI:MGI:4430444|PMID:20040491) MGI PMID:20040491 MGI:MGI:4430444 NCBI chr17:70,844,205...70,853,532
Ensembl chr17:70,844,205...70,853,546
JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 IGI (MGI:MGI:4430444|PMID:20040491) MGI PMID:20040491 MGI:MGI:4430444 NCBI chr 2:156,839,817...156,855,570
Ensembl chr 2:156,840,007...156,855,570
JBrowse link
negative regulation of ectodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzd7 frizzled class receptor 7 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 1:59,482,147...59,486,955
Ensembl chr 1:59,482,424...59,486,955
JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen, type V, alpha 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:27,886,381...28,039,510
Ensembl chr 2:27,886,425...28,039,514
JBrowse link
G Col5a2 collagen, type V, alpha 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 1:45,374,331...45,503,282
Ensembl chr 1:45,374,321...45,503,282
JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior 1 IDA (MGI:MGI:4441249|PMID:18593560) BHF-UCL PMID:18593560 MGI:MGI:4441249 NCBI chr 7:79,792,241...79,793,590
Ensembl chr 7:79,792,241...79,793,788
JBrowse link
G Nanog Nanog homeobox TAS (MGI:MGI:3690198|PMID:16501172) HGNC PMID:16501172 MGI:MGI:3690198 NCBI chr 6:122,707,489...122,714,633
Ensembl chr 6:122,707,489...122,714,633
JBrowse link
negative regulation of heterotypic cell-cell adhesion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr16:23,146,536...23,157,968
Ensembl chr16:23,146,536...23,158,028
JBrowse link
G Apoa1 apolipoprotein A-I ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 9:46,228,630...46,230,469
Ensembl chr 9:46,228,580...46,230,466
JBrowse link
G Il10 interleukin 10 IGI (MGI:MGI:5796069|PMID:26808574) BHF-UCL PMID:26808574 MGI:MGI:5796069 NCBI chr 1:131,019,845...131,024,970
Ensembl chr 1:131,019,845...131,024,974
JBrowse link
G Il1rn interleukin 1 receptor antagonist ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:24,336,860...24,351,491
Ensembl chr 2:24,336,853...24,351,494
JBrowse link
G Klf4 Kruppel-like factor 4 (gut) ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:55,527,137...55,532,475
Ensembl chr 4:55,527,143...55,532,466
JBrowse link
G Map2k5 mitogen-activated protein kinase kinase 5 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 9:63,163,768...63,381,682
Ensembl chr 9:63,163,768...63,377,902
JBrowse link
G Mapk7 mitogen-activated protein kinase 7 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:61,488,812...61,494,267
Ensembl chr11:61,488,812...61,494,406
JBrowse link
G Mbp myelin basic protein ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr18:82,475,091...82,585,637
Ensembl chr18:82,475,146...82,585,637
JBrowse link
G Myadm myeloid-associated differentiation marker ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 7:3,289,038...3,299,355
Ensembl chr 7:3,289,080...3,300,442
JBrowse link
G Tnfaip3 tumor necrosis factor, alpha-induced protein 3 NAS (MGI:MGI:3763997|PMID:18006655), (MGI:MGI:4943658|PMID:19252225) BHF-UCL PMID:18006655, PMID:19252225 MGI:MGI:3763997, MGI:MGI:4943658 NCBI chr10:19,000,910...19,015,410
Ensembl chr10:19,000,910...19,015,657
JBrowse link
G Wnk1 WNK lysine deficient protein kinase 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 6:119,923,969...120,038,695
Ensembl chr 6:119,923,969...120,038,672
JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr19:30,545,876...30,549,496
Ensembl chr19:30,545,863...30,549,665
JBrowse link
G Mesp1 mesoderm posterior 1 IDA (MGI:MGI:4441249|PMID:18593560) BHF-UCL PMID:18593560 MGI:MGI:4441249 NCBI chr 7:79,792,241...79,793,590
Ensembl chr 7:79,792,241...79,793,788
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 IGI (MGI:MGI:3711603|PMID:17462603) MGI PMID:17462603 MGI:MGI:3711603 NCBI chr 3:83,765,750...83,774,314
Ensembl chr 3:83,766,321...83,774,316
JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:56,073,622...56,135,626
Ensembl chr13:56,073,619...56,136,361
JBrowse link
positive regulation of gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 IMP (MGI:MGI:2157654|PMID:11291865) UniProtKB PMID:11291865 MGI:MGI:2157654 NCBI chr 2:148,042,877...148,046,969
Ensembl chr 2:148,042,877...148,046,969
JBrowse link
G Lhx1 LIM homeobox protein 1 IMP (MGI:MGI:2157654|PMID:11291865) UniProtKB PMID:11291865 MGI:MGI:2157654 NCBI chr11:84,517,975...84,525,534
Ensembl chr11:84,518,284...84,525,535
JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr12:9,574,442...9,581,500
Ensembl chr12:9,570,116...9,581,500
JBrowse link
G Osr2 odd-skipped related 2 IMP (MGI:MGI:5009762|PMID:21281489) UniProtKB PMID:21281489 MGI:MGI:5009762 NCBI chr15:35,296,098...35,303,305
Ensembl chr15:35,296,098...35,303,305
JBrowse link
G Otx2 orthodenticle homeobox 2 IMP (MGI:MGI:2157654|PMID:11291865) UniProtKB PMID:11291865 MGI:MGI:2157654 NCBI chr14:48,656,781...48,667,644
Ensembl chr14:48,657,677...48,673,819
JBrowse link
G Scx scleraxis IMP (MGI:MGI:1343990|PMID:10477299) UniProtKB PMID:10477299 MGI:MGI:1343990 NCBI chr15:76,457,411...76,459,468
Ensembl chr15:76,457,452...76,459,458
JBrowse link
G Tenm4 teneurin transmembrane protein 4 IMP (MGI:MGI:3531238|PMID:15489520) UniProtKB PMID:15489520 MGI:MGI:3531238 NCBI chr 7:96,171,244...96,911,093
Ensembl chr 7:96,171,246...96,911,093
JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja1 gap junction protein, alpha 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr10:56,377,300...56,390,419
Ensembl chr10:56,377,330...56,402,513
JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt3a wingless-type MMTV integration site family, member 3A ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:59,248,036...59,290,751
Ensembl chr11:59,248,033...59,290,752
JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr19:30,545,876...30,549,496
Ensembl chr19:30,545,863...30,549,665
JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor, type 1A IGI (MGI:MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:MGI:3702797 NCBI chr14:34,411,061...34,503,336
Ensembl chr14:34,410,734...34,503,341
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IGI (MGI:MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:MGI:3702797 NCBI chr 8:25,518,759...25,575,718
Ensembl chr 8:25,513,654...25,575,718
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23366
    developmental process 7015
      anatomical structure morphogenesis 2893
        regulation of anatomical structure morphogenesis 1139
          regulation of gastrulation 41
            negative regulation of gastrulation + 7
            positive regulation of gastrulation + 10
            regulation of apical constriction involved in ventral furrow formation + 0
            regulation of cell-cell adhesion involved in gastrulation + 11
            regulation of convergent extension involved in gastrulation + 0
            regulation of ectodermal cell fate specification + 1
            regulation of endodermal cell differentiation + 6
            regulation of epiboly involved in gastrulation with mouth forming second + 0
            regulation of mesoderm formation + 7
            regulation of transforming growth factor beta receptor signaling pathway involved in primitive streak formation + 0
Path 2
Term Annotations click to browse term
  biological_process 23366
    developmental process 7015
      anatomical structure development 6488
        multicellular organism development 5954
          embryo development 1299
            embryonic morphogenesis 679
              gastrulation 202
                regulation of gastrulation 41
                  negative regulation of gastrulation + 7
                  positive regulation of gastrulation + 10
                  regulation of apical constriction involved in ventral furrow formation + 0
                  regulation of cell-cell adhesion involved in gastrulation + 11
                  regulation of convergent extension involved in gastrulation + 0
                  regulation of ectodermal cell fate specification + 1
                  regulation of endodermal cell differentiation + 6
                  regulation of epiboly involved in gastrulation with mouth forming second + 0
                  regulation of mesoderm formation + 7
                  regulation of transforming growth factor beta receptor signaling pathway involved in primitive streak formation + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.