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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of gastrulation
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Accession:GO:0010470 term browser browse the term
Definition:Any process that modulates the rate or extent of gastrulation. Gastrulation is the complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals.


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regulation of gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 ISO (PMID:23940118) RGD PMID:23940118 NCBI chr13:34,365,038...34,584,651
Ensembl chr13:34,365,147...34,584,651
JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 ISO
IEA
(PMID:23940118)
GO_REF:0000107
RGD
Ensembl
PMID:23940118 GO_REF:0000107 NCBI chr 8:122,003,719...122,185,495
Ensembl chr 8:122,003,916...122,185,495
JBrowse link
G Crb2 crumbs cell polarity complex component 2 ISO (MGI:MGI:5700252|PMID:26496195) RGD PMID:26496195 MGI:MGI:5700252 NCBI chr 3:22,037,812...22,061,247
Ensembl chr 3:22,038,357...22,058,871
JBrowse link
G Dag1 dystroglycan 1 ISO (PMID:23940118) RGD PMID:23940118 NCBI chr 8:116,980,501...116,993,182
Ensembl chr 8:116,980,497...116,993,193
JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha ISO
IEA
MGI:MGI:2158682 (MGI:MGI:69170|PMID:7958910)
GO_REF:0000107
RGD
Ensembl
PMID:7958910 GO_REF:0000107, MGI:MGI:69170 NCBI chr 3:159,902,441...159,965,003
Ensembl chr 3:159,902,441...159,965,003
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:MGI:1194497|MGI:MGI:1915299 (MGI:MGI:4430444|PMID:20040491) RGD PMID:20040491 MGI:MGI:4430444 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Phldb1 pleckstrin homology-like domain, family B, member 1 IEA
ISO
GO_REF:0000107
(PMID:23940118)
Ensembl
RGD
PMID:23940118 GO_REF:0000107 NCBI chr 8:48,997,189...49,045,176
Ensembl chr 8:48,997,184...49,045,154
JBrowse link
G Phldb2 pleckstrin homology-like domain, family B, member 2 ISO
IEA
(PMID:23940118)
GO_REF:0000107
RGD
Ensembl
PMID:23940118 GO_REF:0000107 NCBI chr11:60,042,879...60,051,229
Ensembl chr11:57,265,732...57,481,589
JBrowse link
G Poglut1 protein O-glucosyltransferase 1 ISO
IEA
ISS
(MGI:MGI:5700252|PMID:26496195)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:26496195 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5700252 NCBI chr11:64,761,493...64,788,210
Ensembl chr11:64,761,146...64,788,208
JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 ISO MGI:MGI:1915299|MGI:MGI:97359 (MGI:MGI:4430444|PMID:20040491) RGD PMID:20040491 MGI:MGI:4430444 NCBI chr 9:119,181,079...119,190,698
Ensembl chr 9:119,181,083...119,190,698
JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 ISO MGI:MGI:1194497|MGI:MGI:97359 (MGI:MGI:4430444|PMID:20040491) RGD PMID:20040491 MGI:MGI:4430444 NCBI chr 3:152,906,961...152,924,380
Ensembl chr 3:152,909,189...152,924,377
JBrowse link
negative regulation of ectodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzd7 frizzled class receptor 7 ISO (PMID:18681827) RGD PMID:18681827 NCBI chr 9:66,305,731...66,308,550
Ensembl chr 9:66,305,731...66,308,550
JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain IEA
ISO
GO_REF:0000107
(PMID:23154389)
Ensembl
RGD
PMID:23154389 GO_REF:0000107 NCBI chr 3:6,430,180...6,581,010
Ensembl chr 3:6,430,201...6,578,882
JBrowse link
G Col5a2 collagen type V alpha 2 chain ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 9:52,091,088...52,238,735
Ensembl chr 9:52,092,511...52,238,564
JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior bHLH transcription factor 1 ISO (MGI:MGI:4441249|PMID:18593560) RGD PMID:18593560 MGI:MGI:4441249 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
negative regulation of heterotypic cell-cell adhesion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing ISO
ISS
(PMID:10604883)
GO_REF:0000024
RGD
UniProt
PMID:10604883 GO_REF:0000024 NCBI chr11:81,330,845...81,344,488
Ensembl chr11:81,330,293...81,344,488
JBrowse link
G Apoa1 apolipoprotein A1 ISO (PMID:21571275) RGD PMID:21571275 NCBI chr 8:50,525,091...50,526,875
Ensembl chr 8:50,525,091...50,526,875
JBrowse link
G Il10 interleukin 10 ISO UniProtKB:P06804 (MGI:MGI:5796069|PMID:26808574) RGD PMID:26808574 MGI:MGI:5796069 NCBI chr13:47,738,933...47,743,392
Ensembl chr13:47,739,526...47,743,392
JBrowse link
G Il1rn interleukin 1 receptor antagonist ISO
IEA
(PMID:2139180)
GO_REF:0000107
RGD
Ensembl
PMID:2139180 GO_REF:0000107 NCBI chr 3:1,449,778...1,468,624
Ensembl chr 3:1,452,644...1,468,614
JBrowse link
G Klf4 Kruppel like factor 4 ISO (PMID:20551324) RGD PMID:20551324 NCBI chr 5:72,283,311...72,287,669
Ensembl chr 5:72,283,313...72,287,669
JBrowse link
G LOC100912321 myeloid-associated differentiation marker-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:34,795,657...34,797,769
Ensembl chr16:34,795,971...34,796,921
JBrowse link
G Map2k5 mitogen activated protein kinase kinase 5 IMP PMID:20551324 BHF-UCL PMID:20551324 RGD:8553940 NCBI chr 8:68,055,976...68,282,656
Ensembl chr 8:68,055,972...68,282,590
JBrowse link
G Mapk7 mitogen-activated protein kinase 7 ISO UniProtKB:Q62862 (PMID:20551324) RGD PMID:20551324 NCBI chr10:47,768,592...47,775,130
Ensembl chr10:47,766,680...47,775,055
JBrowse link
G Mbp myelin basic protein IEA
ISO
GO_REF:0000107
(PMID:22524708)
Ensembl
RGD
PMID:22524708 GO_REF:0000107 NCBI chr18:79,326,738...79,437,310
Ensembl chr18:79,326,738...79,437,310
JBrowse link
G Myadm myeloid-associated differentiation marker ISO
IBA
(PMID:23264465)
PMID:21873635
RGD PMID:23264465, PMID:21873635 RGD:13792537 NCBI chr 1:64,438,465...64,448,332
Ensembl chr 1:64,438,472...64,446,818
JBrowse link
G Wnk1 WNK lysine deficient protein kinase 1 ISO (PMID:27400149) RGD PMID:27400149 NCBI chr 4:152,452,211...152,578,469
Ensembl chr 4:152,452,848...152,578,446
JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (PMID:20559569) RGD PMID:20559569 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 ISO (MGI:MGI:4441249|PMID:18593560) RGD PMID:18593560 MGI:MGI:4441249 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:MGI:98956 (MGI:MGI:3711603|PMID:17462603) RGD PMID:17462603 MGI:MGI:3711603 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone ISO (PMID:23595991) RGD PMID:23595991 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
positive regulation of gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 ISO
ISS
(MGI:MGI:2157654|PMID:11291865)
GO_REF:0000024
RGD
UniProt
PMID:11291865 GO_REF:0000024, MGI:MGI:2157654 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Lhx1 LIM homeobox 1 ISO
ISS
(MGI:MGI:2157654|PMID:11291865)
GO_REF:0000024
RGD
UniProt
PMID:11291865 GO_REF:0000024, MGI:MGI:2157654 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO
ISS
(PMID:21281489)
GO_REF:0000024
RGD
UniProt
PMID:21281489 GO_REF:0000024 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO (MGI:MGI:5009762|PMID:21281489) RGD PMID:21281489 MGI:MGI:5009762 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256
JBrowse link
G Otx2 orthodenticle homeobox 2 ISO (MGI:MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:MGI:2157654 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Rack1 receptor for activated C kinase 1 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:34,149,717...34,155,198
Ensembl chr10:34,149,717...34,155,198
Ensembl chr12:34,149,717...34,155,198
JBrowse link
G Scx scleraxis bHLH transcription factor ISO (MGI:MGI:1343990|PMID:10477299) RGD PMID:10477299 MGI:MGI:1343990 NCBI chr 7:117,519,075...117,521,093
Ensembl chr 7:117,519,075...117,521,093
JBrowse link
G Tenm4 teneurin transmembrane protein 4 ISO (MGI:MGI:3531238|PMID:15489520) RGD PMID:15489520 MGI:MGI:3531238 NCBI chr 1:161,183,858...161,885,094
Ensembl chr 1:161,401,527...161,880,923
JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja1 gap junction protein, alpha 1 ISO (PMID:30599359) RGD PMID:30599359 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt3a Wnt family member 3A ISO (PMID:20559569) RGD PMID:20559569 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (PMID:20559569) RGD PMID:20559569 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:MGI:95522 (MGI:MGI:3702797|PMID:16943278) RGD PMID:16943278 MGI:MGI:3702797 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 ISO
IEA
MGI:MGI:1338938 (MGI:MGI:3702797|PMID:16943278)
GO_REF:0000107
RGD
Ensembl
PMID:16943278 GO_REF:0000107, MGI:MGI:3702797 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure morphogenesis 2872
        regulation of anatomical structure morphogenesis 1130
          regulation of gastrulation 41
            negative regulation of gastrulation + 6
            positive regulation of gastrulation + 11
            regulation of apical constriction involved in ventral furrow formation + 0
            regulation of cell-cell adhesion involved in gastrulation + 11
            regulation of convergent extension involved in gastrulation + 0
            regulation of ectodermal cell fate specification + 1
            regulation of endodermal cell differentiation + 5
            regulation of epiboly involved in gastrulation with mouth forming second + 0
            regulation of mesoderm formation + 7
            regulation of transforming growth factor beta receptor signaling pathway involved in primitive streak formation + 0
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          embryo development 1303
            embryonic morphogenesis 689
              gastrulation 208
                regulation of gastrulation 41
                  negative regulation of gastrulation + 6
                  positive regulation of gastrulation + 11
                  regulation of apical constriction involved in ventral furrow formation + 0
                  regulation of cell-cell adhesion involved in gastrulation + 11
                  regulation of convergent extension involved in gastrulation + 0
                  regulation of ectodermal cell fate specification + 1
                  regulation of endodermal cell differentiation + 5
                  regulation of epiboly involved in gastrulation with mouth forming second + 0
                  regulation of mesoderm formation + 7
                  regulation of transforming growth factor beta receptor signaling pathway involved in primitive streak formation + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.