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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of gastrulation
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Accession:GO:0010470 term browser browse the term
Definition:Any process that modulates the rate or extent of gastrulation. Gastrulation is the complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals.


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regulation of gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 ISO (PMID:23940118) UniProtKB PMID:23940118 NCBI chrNW_004936469:49,067,357...49,335,212 JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 ISO (PMID:23940118) UniProtKB PMID:23940118 NCBI chrNW_004936473:23,756,291...23,940,966 JBrowse link
G Crb2 crumbs cell polarity complex component 2 ISO (MGI:MGI:5700252|PMID:26496195) UniProtKB PMID:26496195 MGI:MGI:5700252 NCBI chrNW_004936487:11,793,078...11,813,803 JBrowse link
G Dag1 dystroglycan 1 ISO (PMID:23940118) UniProtKB PMID:23940118 NCBI chrNW_004936529:1,099,510...1,171,587 JBrowse link
G Hnf4a hepatocyte nuclear factor 4 alpha ISO (MGI:MGI:69170|PMID:7958910) MGI PMID:7958910 MGI:MGI:69170 NCBI chrNW_004936530:2,401,053...2,425,989 JBrowse link
G Nodal nodal growth differentiation factor ISO (MGI:MGI:4430444|PMID:20040491) MGI PMID:20040491 MGI:MGI:4430444 NCBI chrNW_004936521:8,171,146...8,178,802 JBrowse link
G Phldb1 pleckstrin homology like domain family B member 1 ISO (PMID:23940118) UniProtKB PMID:23940118 NCBI chrNW_004936542:3,639,992...3,688,000 JBrowse link
G Phldb2 pleckstrin homology like domain family B member 2 ISO (PMID:23940118) UniProtKB PMID:23940118 NCBI chrNW_004936834:592,688...791,533 JBrowse link
G Poglut1 protein O-glucosyltransferase 1 ISO (MGI:MGI:5700252|PMID:26496195) UniProtKB PMID:26496195 MGI:MGI:5700252 NCBI chrNW_004936536:6,408,066...6,427,864 JBrowse link
G Tgif1 TGFB induced factor homeobox 1 ISO (MGI:MGI:4430444|PMID:20040491) MGI PMID:20040491 MGI:MGI:4430444 NCBI chrNW_004936672:1,128,104...1,135,844 JBrowse link
G Tgif2 TGFB induced factor homeobox 2 ISO (MGI:MGI:4430444|PMID:20040491) MGI PMID:20040491 MGI:MGI:4430444 NCBI chrNW_004936561:4,450,093...4,465,358 JBrowse link
negative regulation of ectodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzd7 frizzled class receptor 7 ISO (PMID:18681827) BHF-UCL PMID:18681827 NCBI chrNW_004936726:1,256,684...1,275,324 JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain ISO (PMID:23154389) UniProtKB PMID:23154389 NCBI chrNW_004936669:2,474,381...2,613,541 JBrowse link
G Col5a2 collagen type V alpha 2 chain ISO (PMID:23154389) UniProtKB PMID:23154389 NCBI chrNW_004936506:8,739,475...8,873,073 JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior bHLH transcription factor 1 ISO (MGI:MGI:4441249|PMID:18593560) BHF-UCL PMID:18593560 MGI:MGI:4441249 NCBI chrNW_004936483:15,533,264...15,534,576 JBrowse link
negative regulation of heterotypic cell-cell adhesion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing ISO (PMID:10604883) BHF-UCL PMID:10604883 NCBI chrNW_004936578:3,168,599...3,179,369 JBrowse link
G Apoa1 apolipoprotein A1 ISO (PMID:21571275) BHF-UCL PMID:21571275 NCBI chrNW_004936542:2,111,055...2,112,626 JBrowse link
G Il10 interleukin 10 ISO (MGI:MGI:5796069|PMID:26808574) BHF-UCL PMID:26808574 MGI:MGI:5796069 NCBI chrNW_004936557:5,834,874...5,838,502 JBrowse link
G Il1rn interleukin 1 receptor antagonist ISO (PMID:2139180) BHF-UCL PMID:2139180 NCBI chrNW_004936783:1,447,158...1,466,331 JBrowse link
G Klf4 Kruppel like factor 4 ISO (PMID:20551324) BHF-UCL PMID:20551324 NCBI chrNW_004936559:5,105,456...5,109,970 JBrowse link
G Map2k5 mitogen-activated protein kinase kinase 5 ISO PMID:20551324 BHF-UCL PMID:20551324 RGD:8553940 NCBI chrNW_004936471:27,491,255...27,728,572 JBrowse link
G Mapk7 mitogen-activated protein kinase 7 ISO (PMID:20551324) BHF-UCL PMID:20551324 NCBI chrNW_004936881:372,713...377,655 JBrowse link
G Mbp myelin basic protein ISO (PMID:22524708) CAFA PMID:22524708 NCBI chrNW_004936616:2,082,154...2,159,028 JBrowse link
G Myadm myeloid associated differentiation marker ISO (PMID:23264465) UniProtKB PMID:23264465 NCBI chrNW_004936994:78,989...83,536 JBrowse link
G Wnk1 WNK lysine deficient protein kinase 1 ISO (PMID:27400149) BHF-UCL PMID:27400149 NCBI chrNW_004936606:933,637...1,069,885 JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (PMID:20559569) BHF-UCL PMID:20559569 NCBI chrNW_004936787:307,290...309,963 JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 ISO (MGI:MGI:4441249|PMID:18593560) BHF-UCL PMID:18593560 MGI:MGI:4441249 NCBI chrNW_004936483:15,533,264...15,534,576 JBrowse link
G Sfrp2 secreted frizzled related protein 2 ISO (MGI:MGI:3711603|PMID:17462603) MGI PMID:17462603 MGI:MGI:3711603 NCBI chrNW_004936576:604,174...612,440 JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101971629 core histone macro-H2A.1 ISO (PMID:23595991) UniProt PMID:23595991 NCBI chrNW_004936597:2,496,489...2,556,352 JBrowse link
positive regulation of gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 ISO (MGI:MGI:2157654|PMID:11291865) UniProtKB PMID:11291865 MGI:MGI:2157654 NCBI chrNW_004936620:2,966,341...2,969,349 JBrowse link
G Lhx1 LIM homeobox 1 ISO (MGI:MGI:2157654|PMID:11291865) UniProtKB PMID:11291865 MGI:MGI:2157654 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO (PMID:21281489) UniProtKB PMID:21281489 NCBI chrNW_004936493:11,888,024...11,895,058 JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO (MGI:MGI:5009762|PMID:21281489) UniProtKB PMID:21281489 MGI:MGI:5009762 NCBI chrNW_004936470:44,024,497...44,032,429 JBrowse link
G Otx2 orthodenticle homeobox 2 ISO (MGI:MGI:2157654|PMID:11291865) UniProtKB PMID:11291865 MGI:MGI:2157654 NCBI chrNW_004936495:1,433,124...1,449,409 JBrowse link
G Scx scleraxis bHLH transcription factor ISO (MGI:MGI:1343990|PMID:10477299) UniProtKB PMID:10477299 MGI:MGI:1343990 NCBI chrNW_004936470:7,966,096...7,972,379 JBrowse link
G Tenm4 teneurin transmembrane protein 4 ISO (MGI:MGI:3531238|PMID:15489520) UniProtKB PMID:15489520 MGI:MGI:3531238 NCBI chrNW_004936498:7,145,510...7,868,792 JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt3a Wnt family member 3A ISO (PMID:20559569) BHF-UCL PMID:20559569 NCBI chrNW_004936864:150,742...179,205 JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (PMID:20559569) BHF-UCL PMID:20559569 NCBI chrNW_004936787:307,290...309,963 JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A ISO (MGI:MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:MGI:3702797 NCBI chrNW_004936804:52,435...115,289 JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 ISO (MGI:MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:MGI:3702797 NCBI chrNW_004936710:1,760,365...1,815,269 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11966
    developmental process 5627
      anatomical structure morphogenesis 2513
        regulation of anatomical structure morphogenesis 1020
          regulation of gastrulation 38
            negative regulation of gastrulation + 6
            positive regulation of gastrulation + 9
            regulation of apical constriction involved in ventral furrow formation + 0
            regulation of cell-cell adhesion involved in gastrulation + 10
            regulation of convergent extension involved in gastrulation + 0
            regulation of ectodermal cell fate specification + 1
            regulation of endodermal cell differentiation + 5
            regulation of epiboly involved in gastrulation with mouth forming second + 0
            regulation of mesoderm formation + 6
            regulation of transforming growth factor beta receptor signaling pathway involved in primitive streak formation + 0
Path 2
Term Annotations click to browse term
  biological_process 11966
    developmental process 5627
      anatomical structure development 5266
        multicellular organism development 4832
          embryo development 1175
            embryonic morphogenesis 630
              gastrulation 177
                regulation of gastrulation 38
                  negative regulation of gastrulation + 6
                  positive regulation of gastrulation + 9
                  regulation of apical constriction involved in ventral furrow formation + 0
                  regulation of cell-cell adhesion involved in gastrulation + 10
                  regulation of convergent extension involved in gastrulation + 0
                  regulation of ectodermal cell fate specification + 1
                  regulation of endodermal cell differentiation + 5
                  regulation of epiboly involved in gastrulation with mouth forming second + 0
                  regulation of mesoderm formation + 6
                  regulation of transforming growth factor beta receptor signaling pathway involved in primitive streak formation + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.