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ONTOLOGY REPORT - ANNOTATIONS


Term:miRNA metabolic process
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Accession:GO:0010586 term browser browse the term
Definition:The chemical reactions and pathways involving miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression.
Synonyms:exact_synonym: microRNA metabolic process


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miRNA metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ago2 argonaute RISC catalytic component 2 JBrowse link NW_004936470 10,641,109 10,690,587 RGD:9068941
G Ago4 argonaute RISC component 4 JBrowse link NW_004936474 18,335,536 18,371,398 RGD:9068941
G Bcdin3d BCDIN3 domain containing RNA methyltransferase JBrowse link NW_004936512 7,516,324 7,521,063 RGD:9068941
G Ddx17 DEAD-box helicase 17 JBrowse link NW_004936492 2,806,630 2,826,071 RGD:9068941
G Drosha drosha ribonuclease III JBrowse link NW_004936518 9,100,094 9,218,405 RGD:9068941
G Khsrp KH-type splicing regulatory protein JBrowse link NW_004936588 3,764,401 3,774,492 RGD:9068941
G Lin28a lin-28 homolog A JBrowse link NW_004936474 10,896,153 10,909,247 RGD:9068941
G Trim71 tripartite motif containing 71 JBrowse link NW_004936473 23,223,984 23,290,177 RGD:9068941
G Tut4 terminal uridylyl transferase 4 JBrowse link NW_004936522 8,468,092 8,560,453 RGD:9068941
G Tut7 terminal uridylyl transferase 7 JBrowse link NW_004936680 1,693,815 1,753,641 RGD:9068941
miRNA 2'-O-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcdin3d BCDIN3 domain containing RNA methyltransferase JBrowse link NW_004936512 7,516,324 7,521,063 RGD:9068941
miRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dis3l2 DIS3 like 3'-5' exoribonuclease 2 JBrowse link NW_004936525 4,718,773 5,058,512 RGD:9068941
G Lin28a lin-28 homolog A JBrowse link NW_004936474 10,896,153 10,909,247 RGD:9068941
G Lin28b lin-28 homolog B JBrowse link NW_004936564 1,646,469 1,768,879 RGD:9068941
G Parn poly(A)-specific ribonuclease JBrowse link NW_004936501 2,666,908 2,810,159 RGD:9068941
G Snd1 staphylococcal nuclease and tudor domain containing 1 JBrowse link NW_004936479 14,848,438 15,259,735 RGD:9068941
G Tent4b terminal nucleotidyltransferase 4B JBrowse link NW_004936475 3,266,763 3,328,209 RGD:9068941
G Tut4 terminal uridylyl transferase 4 JBrowse link NW_004936522 8,468,092 8,560,453 RGD:9068941
negative regulation of miRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tent2 terminal nucleotidyltransferase 2 JBrowse link NW_004936549 7,401,532 7,465,264 RGD:9068941
negative regulation of miRNA metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ep300 E1A binding protein p300 JBrowse link NW_004936492 696,982 778,132 RGD:9068941
positive regulation of miRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lin28b lin-28 homolog B JBrowse link NW_004936564 1,646,469 1,768,879 RGD:9068941
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link NW_004936491 1,989,429 2,032,430 RGD:9068941
G Zc3h12a zinc finger CCCH-type containing 12A JBrowse link NW_004936474 19,714,145 19,722,512 RGD:9068941
positive regulation of miRNA metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dicer1 dicer 1, ribonuclease III JBrowse link NW_004936846 528,768 584,599 RGD:9068941
G Hras HRas proto-oncogene, GTPase JBrowse link NW_004936888 375,372 378,125 RGD:9068941
G Nfkb1 nuclear factor kappa B subunit 1 JBrowse link NW_004936520 733,760 850,563 RGD:9068941
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link NW_004936599 3,800,142 3,810,583 RGD:9068941
regulation of miRNA metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dicer1 dicer 1, ribonuclease III JBrowse link NW_004936846 528,768 584,599 RGD:9068941
G Drosha drosha ribonuclease III JBrowse link NW_004936518 9,100,094 9,218,405 RGD:9068941
G Khsrp KH-type splicing regulatory protein JBrowse link NW_004936588 3,764,401 3,774,492 RGD:9068941
G Rc3h1 ring finger and CCCH-type domains 1 JBrowse link NW_004936481 13,919,006 13,973,868 RGD:9068941
G Rc3h2 ring finger and CCCH-type domains 2 JBrowse link NW_004936487 11,341,663 11,393,275 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11930
    metabolic process 7628
      organic substance metabolic process 7326
        macromolecule metabolic process 6360
          nucleic acid metabolic process 3279
            RNA metabolic process 2909
              ncRNA metabolic process 249
                miRNA metabolic process 25
                  mature miRNA 3'-end processing 0
                  miRNA 2'-O-methylation 1
                  miRNA catabolic process + 10
                  negative regulation of miRNA metabolic process + 2
                  positive regulation of miRNA metabolic process + 7
                  regulation of miRNA metabolic process + 13
Path 2
Term Annotations click to browse term
  biological_process 11930
    metabolic process 7628
      cellular metabolic process 7036
        cellular aromatic compound metabolic process 3731
          nucleobase-containing compound metabolic process 3564
            nucleic acid metabolic process 3279
              RNA metabolic process 2909
                ncRNA metabolic process 249
                  miRNA metabolic process 25
                    mature miRNA 3'-end processing 0
                    miRNA 2'-O-methylation 1
                    miRNA catabolic process + 10
                    negative regulation of miRNA metabolic process + 2
                    positive regulation of miRNA metabolic process + 7
                    regulation of miRNA metabolic process + 13
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.