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ONTOLOGY REPORT - ANNOTATIONS


Term:programmed cell death involved in cell development
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Accession:GO:0010623 term browser browse the term
Definition:The activation of endogenous cellular processes that result in the death of a cell as part of its development.
Comment:This process is part of the natural developmental program of some cell types, but it does not always happen as part of the development or shaping of a gross anatomical structure.
Synonyms:broad_synonym: developmental programmed cell death;   programmed cell death involved in development


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programmed cell death involved in cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnase1l3 deoxyribonuclease 1-like 3 ISO
IBA
(MGI:2385551|PMID:12050166)
PMID:21873635
RGD PMID:12050166, PMID:21873635 MGI:2385551, RGD:13792537 NCBI chr15:18,710,492...18,736,476
Ensembl chr15:18,710,492...18,736,473
JBrowse link
G Ntrk1 neurotrophic receptor tyrosine kinase 1 IDA PMID:20811452 UniProt PMID:20811452 RGD:8554835 NCBI chr 2:187,143,568...187,160,373
Ensembl chr 2:187,143,568...187,160,373
JBrowse link
ectopic germ cell programmed cell death term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator IEA
ISO
GO_REF:0000107
MGI:1857429|MGI:96677|MGI:96974 (MGI:2680318|PMID:14660547), (MGI:3691300|PMID:17107997)
Ensembl
RGD
PMID:14660547, PMID:17107997 GO_REF:0000107, MGI:2680318, MGI:3691300 NCBI chr 1:101,451,801...101,457,207
Ensembl chr 1:101,451,802...101,457,207
JBrowse link
G Casp2 caspase 2 ISO MGI:107700 (MGI:3691999|PMID:11536012) RGD PMID:11536012 MGI:3691999 NCBI chr 4:71,652,358...71,670,228
Ensembl chr 4:71,652,354...71,670,239
JBrowse link
G Casp4 caspase 4 ISO MGI:2159366|MGI:97295 (MGI:3691999|PMID:11536012) RGD PMID:11536012 MGI:3691999 NCBI chr 8:2,616,391...2,651,682
Ensembl chr 8:2,635,851...2,651,652
JBrowse link
G Il1a interleukin 1 alpha IEA
ISO
GO_REF:0000107
MGI:96543 (MGI:3691999|PMID:11536012)
Ensembl
RGD
PMID:11536012 GO_REF:0000107, MGI:3691999 NCBI chr 3:121,824,712...121,836,122
Ensembl chr 3:121,825,412...121,836,086
JBrowse link
G Il1b interleukin 1 beta IEA
ISO
GO_REF:0000107
MGI:96542 (MGI:3691999|PMID:11536012)
Ensembl
RGD
PMID:11536012 GO_REF:0000107, MGI:3691999 NCBI chr 3:121,876,256...121,882,637
Ensembl chr 3:121,876,263...121,882,726
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase ISO MGI:99702 (MGI:2680318|PMID:14660547) RGD PMID:14660547 MGI:2680318 NCBI chr14:35,072,131...35,149,638
Ensembl chr14:35,072,108...35,149,610
JBrowse link
G Kitlg KIT ligand ISO MGI:1856161 (MGI:3691300|PMID:17107997) RGD PMID:17107997 MGI:3691300 NCBI chr 7:42,269,784...42,351,054
Ensembl chr 7:42,269,784...42,351,054
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit ISO MGI:2667593 (MGI:3700621|PMID:17145779) RGD PMID:17145779 MGI:3700621 NCBI chr11:89,293,547...89,510,948
Ensembl chr11:89,293,696...89,510,871
JBrowse link
negative regulation of retinal cell programmed cell death term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator IEA
ISO
GO_REF:0000107
MGI:1857430 (MGI:1336407|PMID:10321489)
Ensembl
RGD
PMID:10321489 GO_REF:0000107, MGI:1336407 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 ISO MGI:3054837 (MGI:3054140|PMID:15363390) RGD PMID:15363390 MGI:3054140 NCBI chr 3:176,279,997...176,282,211
Ensembl chr 3:176,279,997...176,282,211
JBrowse link
positive regulation of retinal cell programmed cell death term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp6 caspase 6 IMP RGD PMID:12917395 RGD:2301324 NCBI chr 2:235,341,326...235,353,715
Ensembl chr 2:235,341,365...235,353,967
Ensembl chr 2:235,341,365...235,353,967
JBrowse link
regulation of retinal cell programmed cell death term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor ISO (MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:2155023 NCBI chr 3:100,768,637...100,819,216
Ensembl chr 3:100,768,637...100,819,210
JBrowse link
G Cntf ciliary neurotrophic factor IEA
ISO
GO_REF:0000107
(MGI:2155023|PMID:11747369)
Ensembl
RGD
PMID:11747369 GO_REF:0000107, MGI:2155023 NCBI chr 1:229,599,009...229,601,032
Ensembl chr 1:229,599,009...229,601,032
JBrowse link
G Fgf2 fibroblast growth factor 2 ISO (MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:2155023 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
JBrowse link
retinal cell programmed cell death term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator IEA
ISO
GO_REF:0000107
MGI:1857429 (MGI:2677551|PMID:14517994)
Ensembl
RGD
PMID:14517994 GO_REF:0000107, MGI:2677551 NCBI chr 1:101,451,801...101,457,207
Ensembl chr 1:101,451,802...101,457,207
JBrowse link
G Faslg Fas ligand ISO MGI:1856384 (MGI:2677551|PMID:14517994) RGD PMID:14517994 MGI:2677551 NCBI chr13:79,696,811...79,717,581
Ensembl chr13:79,698,445...79,705,705
JBrowse link
G Slc4a7 solute carrier family 4 member 7 ISO MGI:2682641 (MGI:2680888|PMID:12808454) RGD PMID:12808454 MGI:2680888 NCBI chr15:11,832,611...11,912,923
Ensembl chr15:11,836,286...11,912,916
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20030
    developmental process 6828
      cellular developmental process 4458
        programmed cell death involved in cell development 18
          antipodal cell degeneration 0
          ectopic germ cell programmed cell death 8
          larval midgut cell programmed cell death 0
          nurse cell apoptotic process + 0
          retinal cell programmed cell death + 9
          salivary gland cell autophagic cell death + 0
          synergid death 0
Path 2
Term Annotations click to browse term
  biological_process 20030
    developmental process 6828
      cellular developmental process 4458
        cell differentiation 4363
          cell development 2442
            programmed cell death involved in cell development 18
              antipodal cell degeneration 0
              ectopic germ cell programmed cell death 8
              larval midgut cell programmed cell death 0
              nurse cell apoptotic process + 0
              retinal cell programmed cell death + 9
              salivary gland cell autophagic cell death + 0
              synergid death 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.