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ONTOLOGY REPORT - ANNOTATIONS


Term:amino-acid betaine transport
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Accession:GO:0015838 term browser browse the term
Definition:The directed movement of betaine, the N-trimethyl derivative of an amino acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Synonyms:exact_synonym: betaine transport


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amino-acid betaine transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc6a20 solute carrier family 6 member 20 IEA
ISO
IMP
GO_REF:0000107
(MGI:3820712|PMID:19029042)
PMID:26028423
Ensembl
RGD
PMID:19029042, PMID:26028423 GO_REF:0000107, MGI:3820712, RGD:30309905 NCBI chr 8:132,713,013...132,753,145
Ensembl chr 8:132,665,927...132,753,292
JBrowse link
(R)-carnitine transmembrane transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc22a5 solute carrier family 22 member 5 ISO
IEA
IMP
(PMID:23877104)
(MGI:6437032|PMID:14595704)
GO_REF:0000107
PMID:28257821
RGD
Ensembl
PMID:14595704, PMID:23877104, PMID:28257821 GO_REF:0000107, MGI:6437032, RGD:30309931 NCBI chr10:39,201,101...39,228,090
Ensembl chr10:39,201,107...39,323,853
JBrowse link
carnitine transmembrane transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07029596.1 IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr10:39,330,731...39,373,437 JBrowse link
G Slc22a4 solute carrier family 22 member 4 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:39,334,972...39,373,508 JBrowse link
G Slc25a20 solute carrier family 25 member 20 IDA PMID:9731180 RGD
UniProt
PMID:2223786, PMID:9731180 RGD:13440120, RGD:39458032 NCBI chr 8:117,455,308...117,476,762
Ensembl chr 8:117,455,262...117,476,734
JBrowse link
carnitine transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdzk1 PDZ domain containing 1 ISO (PMID:15523054) RGD PMID:15523054 NCBI chr 2:198,965,685...198,999,323
Ensembl chr 2:198,965,685...198,999,323
JBrowse link
G Slc22a16 solute carrier family 22 member 16 ISO (PMID:12089149) RGD PMID:12089149 NCBI chr20:45,658,398...45,669,192 JBrowse link
G Slc22a4 solute carrier family 22 member 4 ISO (PMID:16729965)
(MGI:1928404|PMID:11010964)
RGD PMID:11010964, PMID:16729965 MGI:1928404 NCBI chr10:39,334,972...39,373,508 JBrowse link
G Slc22a5 solute carrier family 22 member 5 IDA
ISO
IMP
MGI:1856926 (MGI:1206151|PMID:9634010), (MGI:1327457|PMID:9916797), (MGI:1338996|PMID:10087008), (MGI:1351704|PMID:10498652), (MGI:1928404|PMID:11010964), (MGI:66711|PMID:8155735), (MGI:81093|PMID:8670273)
(PMID:9685390), (PMID:9916797)
sodium-dependent
RGD PMID:8155735, PMID:8670273, PMID:9634010, PMID:9685390, PMID:9916797, PMID:10087008, PMID:10498652, PMID:11010964, PMID:9792817, PMID:10636865, PMID:12644265, PMID:15923388, PMID:16322553 MGI:1206151, MGI:1327457, MGI:1338996, MGI:1351704, MGI:1928404, MGI:66711, MGI:81093, RGD:730132, RGD:1643135, RGD:1643141, RGD:1643142, RGD:1643150 NCBI chr10:39,201,101...39,228,090
Ensembl chr10:39,201,107...39,323,853
JBrowse link
G Slc25a29 solute carrier family 25 member 29 NOT ISO
ISS
(PMID:24652292)
GO_REF:0000024
RGD
UniProt
PMID:24652292 GO_REF:0000024 NCBI chr 6:132,736,964...132,747,912
Ensembl chr 6:132,735,883...132,747,828
JBrowse link
glycine betaine transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc38a2 solute carrier family 38, member 2 IDA RGD PMID:24434061 RGD:9999215 NCBI chr 7:138,088,654...138,100,869
Ensembl chr 7:138,088,649...138,100,841
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    localization 6478
      establishment of localization 4886
        transport 4734
          nitrogen compound transport 2118
            quaternary ammonium group transport 16
              amino-acid betaine transport 9
                4-(trimethylammonio)butanoate transport 0
                carnitine transport + 7
                glycine betaine transport 1
Path 2
Term Annotations click to browse term
  biological_process 20020
    localization 6478
      establishment of localization 4886
        transport 4734
          ion transport 3500
            anion transport 2681
              organic substance transport 2558
                organic cation transport 44
                  quaternary ammonium group transport 16
                    amino-acid betaine transport 9
                      4-(trimethylammonio)butanoate transport 0
                      carnitine transport + 7
                      glycine betaine transport 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.