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ONTOLOGY REPORT - ANNOTATIONS


Term:viral process
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Accession:GO:0016032 term browser browse the term
Definition:A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
Comment:See also the biological process terms 'viral infectious cycle ; GO:0019058' and 'lysogeny ; GO:0030069'.
Synonyms:exact_synonym: virus process
 related_synonym: viral infection;   virulence
 alt_id: GO:0022415
 xref: Wikipedia:Viral_life_cycle


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viral process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC118772.1 RGD:1600115
G Bicd1 BICD cargo adaptor 1 JBrowse link 4 184,018,845 184,167,628 RGD:1624291
G Nlrx1 NLR family member X1 JBrowse link 8 48,583,559 48,600,203 RGD:1600115
G Pdcl3 phosducin-like 3 JBrowse link 9 45,672,257 45,680,728 RGD:1600115
G Slc20a2 solute carrier family 20 member 2 JBrowse link 16 74,318,287 74,408,030 RGD:1600115
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
G Vcam1 vascular cell adhesion molecule 1 JBrowse link 2 219,071,193 219,090,931 RGD:1600115
clathrin-dependent endocytosis of virus by host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Siglec1 sialic acid binding Ig like lectin 1 JBrowse link 3 123,612,067 123,631,718 RGD:1624291
RGD:13792537
coreceptor-mediated virion attachment to host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nectin2 nectin cell adhesion molecule 2 JBrowse link 1 80,631,449 80,666,617 RGD:1624291
RGD:13792537
DNA-templated viral transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx9 DExH-box helicase 9 JBrowse link 13 70,885,503 70,922,278 RGD:1624291
early viral transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnt2 cyclin T2 JBrowse link 13 44,475,959 44,516,892 RGD:1624291
G Mon1b MON1 homolog B, secretory trafficking associated JBrowse link 19 45,938,433 45,946,647 RGD:1624291
entry of viral genome into host nucleus through nuclear pore complex via importin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kpna2 karyopherin subunit alpha 2 JBrowse link 10 95,200,029 95,212,111 RGD:1624291
G Kpna6 karyopherin subunit alpha 6 JBrowse link 5 147,852,738 147,867,600 RGD:1624291
establishment of viral latency term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Creb3 cAMP responsive element binding protein 3 JBrowse link 5 59,063,532 59,068,196 RGD:1624291
fusion of virus membrane with host endosome membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctsl cathepsin L JBrowse link 17 1,873,105 1,879,266 RGD:1624291
fusion of virus membrane with host plasma membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gas6 growth arrest specific 6 JBrowse link 16 81,213,364 81,243,824 RGD:1624291
RGD:1600115
G Hyal2 hyaluronidase 2 JBrowse link 8 116,324,062 116,328,978 RGD:1600115
RGD:1624291
G Nectin2 nectin cell adhesion molecule 2 JBrowse link 1 80,631,449 80,666,617 RGD:1624291
RGD:13792537
induction by virus of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 JBrowse link 3 110,159,624 110,245,382 RGD:1624291
G Phb2 prohibitin 2 JBrowse link 4 157,230,769 157,235,375 RGD:1624291
induction by virus of host cell-cell fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd4 Cd4 molecule JBrowse link 4 157,381,862 157,408,357 RGD:1624291
intracellular transport of viral protein in host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dynlt1 dynein light chain Tctex-type 1 JBrowse link 1 47,206,892 47,213,785 RGD:1624291
intracellular transport of virus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dync1i1 dynein cytoplasmic 1 intermediate chain 1 JBrowse link 4 30,807,755 31,121,097 RGD:1624291
IRES-dependent viral translational initiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Denr density regulated reinitiation and release factor JBrowse link 12 38,095,717 38,117,758 RGD:1624291
G Eif2d eukaryotic translation initiation factor 2D JBrowse link 13 47,935,138 47,958,459 RGD:1624291
G Eif3a eukaryotic translation initiation factor 3, subunit A JBrowse link 1 282,139,809 282,170,017 RGD:1624291
G Eif3b eukaryotic translation initiation factor 3, subunit B JBrowse link 12 16,285,730 16,310,190 RGD:1624291
G Eif3d eukaryotic translation initiation factor 3, subunit D JBrowse link 7 119,188,189 119,200,578 RGD:1624291
G Eif3f eukaryotic translation initiation factor 3, subunit F JBrowse link 1 173,532,826 173,541,806 RGD:1624291
G Mcts1 MCTS1, re-initiation and release factor JBrowse link X 124,894,269 124,906,129 RGD:1624291
G Pcbp2 poly(rC) binding protein 2 JBrowse link 7 144,077,901 144,103,723 RGD:1624291
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link 7 12,663,965 12,673,723 RGD:1624291
G Ssb small RNA binding exonuclease protection factor La JBrowse link 3 56,092,425 56,102,008 RGD:1624291
late viral transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnt2 cyclin T2 JBrowse link 13 44,475,959 44,516,892 RGD:1624291
G Mon1b MON1 homolog B, secretory trafficking associated JBrowse link 19 45,938,433 45,946,647 RGD:1624291
G Usf1 upstream transcription factor 1 JBrowse link 13 89,797,750 89,805,561 RGD:1624291
modulation by host of viral genome replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ifi27 interferon, alpha-inducible protein 27 JBrowse link 6 127,327,959 127,334,430 RGD:1624291
modulation by host of viral RNA genome replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fbxl2 F-box and leucine-rich repeat protein 2 JBrowse link 8 122,240,393 122,290,439 RGD:1624291
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:1600115
RGD:1624291
G Phb prohibitin JBrowse link 10 83,476,107 83,488,878 RGD:1624291
G Vapb VAMP associated protein B and C JBrowse link 3 171,832,558 171,871,042 RGD:1624291
modulation by host of viral RNA-binding transcription factor activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 JBrowse link 13 48,679,726 48,709,663 RGD:1624291
modulation by host of viral transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Psmc3 proteasome 26S subunit, ATPase 3 JBrowse link 3 79,876,938 79,882,319 RGD:1600115
RGD:1624291
modulation by virus of host process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dag1 dystroglycan 1 JBrowse link 8 116,980,501 116,993,182 RGD:1624291
G Rraga Ras-related GTP binding A JBrowse link 5 104,941,067 104,942,662 RGD:1624291
RGD:1600115
G Rxra retinoid X receptor alpha JBrowse link 3 6,272,560 6,295,354 RGD:1600115
RGD:1624291
G Tyms thymidylate synthetase JBrowse link 9 121,918,875 121,931,564 RGD:2317429
G Vapb VAMP associated protein B and C JBrowse link 3 171,832,558 171,871,042 RGD:1624291
RGD:1600115
modulation by virus of host transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ntrk3 neurotrophic receptor tyrosine kinase 3 JBrowse link 1 139,890,537 140,262,503 RGD:2325644
negative regulation by host of viral genome replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccl12 chemokine (C-C motif) ligand 12 JBrowse link 10 69,476,866 69,478,416 RGD:1600115
G Ccnk cyclin K JBrowse link 6 132,090,235 132,113,560 RGD:1624291
G Ceacam1 CEA cell adhesion molecule 1 JBrowse link 1 82,327,955 82,344,345 RGD:1624291
G Ddx3x DEAD-box helicase 3, X-linked JBrowse link X 10,400,363 10,414,010 RGD:1624291
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 JBrowse link 3 110,159,624 110,245,382 RGD:1624291
RGD:1600115
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:1624291
G Vapa VAMP associated protein A JBrowse link 9 113,300,831 113,331,872 RGD:1624291
G Vapb VAMP associated protein B and C JBrowse link 3 171,832,558 171,871,042 RGD:1624291
G Zc3h12a zinc finger CCCH type containing 12A JBrowse link 5 143,111,342 143,120,131 RGD:1624291
negative regulation by host of viral glycoprotein metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apcs amyloid P component, serum JBrowse link 13 91,426,621 91,427,417 RGD:1624291
RGD:1600115
G Ptx3 pentraxin 3 JBrowse link 2 158,097,843 158,103,653 RGD:1624291
negative regulation by host of viral process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apcs amyloid P component, serum JBrowse link 13 91,426,621 91,427,417 RGD:13792537
G Ceacam1 CEA cell adhesion molecule 1 JBrowse link 1 82,327,955 82,344,345 RGD:1624291
G Crp C-reactive protein JBrowse link 13 91,080,448 91,081,358 RGD:13792537
G Ltf lactotransferrin JBrowse link 8 119,290,416 119,313,261 RGD:1624291
G Mptx1 mucosal pentraxin 1 JBrowse link 13 91,772,927 91,827,231 RGD:13792537
G Ptx3 pentraxin 3 JBrowse link 2 158,097,843 158,103,653 RGD:13792537
negative regulation by host of viral release from host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vapb VAMP associated protein B and C JBrowse link 3 171,832,558 171,871,042 RGD:1624291
negative regulation by host of viral transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccl3 C-C motif chemokine ligand 3 JBrowse link 10 70,869,516 70,871,066 RGD:1624291
RGD:1600115
G Ccl4 C-C motif chemokine ligand 4 JBrowse link 10 70,870,926 70,886,357 RGD:1624291
G Ccl5 C-C motif chemokine ligand 5 JBrowse link 10 70,739,764 70,744,303 RGD:1624291
RGD:1600115
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:1624291
G Hmga2 high mobility group AT-hook 2 JBrowse link 7 65,159,944 65,275,408 RGD:1624291
RGD:1600115
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:1624291
G Inpp5k inositol polyphosphate-5-phosphatase K JBrowse link 10 63,775,639 63,796,879 RGD:1624291
G Jun Jun proto-oncogene, AP-1 transcription factor subunit JBrowse link 5 114,011,184 114,014,277 RGD:1624291
G Pou2f3 POU class 2 homeobox 3 JBrowse link 8 47,412,063 47,495,042 RGD:1600115
RGD:1624291
G Rest RE1-silencing transcription factor JBrowse link 14 33,131,985 33,152,019 RGD:1600115
RGD:1624291
G Tardbp TAR DNA binding protein JBrowse link 5 165,432,089 165,442,232 RGD:1624291
G Tfap4 transcription factor AP-4 JBrowse link 10 11,204,616 11,222,975 RGD:1624291
G Zfp639 zinc finger protein 639 JBrowse link 2 118,906,479 118,917,491 RGD:1624291
RGD:1600115
negative regulation by virus of viral protein levels in host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Stat1 signal transducer and activator of transcription 1 JBrowse link 9 54,287,540 54,327,958 RGD:1624291
G Vapb VAMP associated protein B and C JBrowse link 3 171,832,558 171,871,042 RGD:1624291
negative regulation of intracellular transport of viral material term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bst2 bone marrow stromal cell antigen 2 JBrowse link 16 19,938,781 19,942,353 RGD:1600115
RGD:1624291
G Mx2 MX dynamin like GTPase 2 JBrowse link 11 38,035,306 38,066,185 RGD:1624291
G Trim15 tripartite motif containing 15 JBrowse link 20 2,194,293 2,203,636 RGD:1624291
negative regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aicda activation-induced cytidine deaminase JBrowse link 4 155,359,909 155,371,104 RGD:13792537
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 JBrowse link 7 121,108,108 121,128,346 RGD:1624291
RGD:13792537
G Hmga2 high mobility group AT-hook 2 JBrowse link 7 65,159,944 65,275,408 RGD:1624291
RGD:1600115
G Inpp5k inositol polyphosphate-5-phosphatase K JBrowse link 10 63,775,639 63,796,879 RGD:1624291
G Morc2 MORC family CW-type zinc finger 2 JBrowse link 14 83,889,138 83,930,263 RGD:1624291
G Mphosph8 M-phase phosphoprotein 8 JBrowse link 15 36,918,843 36,946,712 RGD:1600115
RGD:1624291
G Resf1 retroelement silencing factor 1 JBrowse link 4 183,879,177 183,905,807 RGD:1624291
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 JBrowse link 2 196,495,867 196,527,412 RGD:1624291
G Tasor transcription activation suppressor JBrowse link 16 3,050,506 3,108,168 RGD:1624291
G Trim28 tripartite motif-containing 28 JBrowse link 1 65,544,369 65,551,043 RGD:1624291
negative regulation of transformation of host cell by virus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fbln1 fibulin 1 JBrowse link 7 126,096,793 126,176,468 RGD:1624291
negative regulation of viral entry into host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07015596.1 RGD:13792537
G AABR07021463.1 RGD:13792537
G Apcs amyloid P component, serum JBrowse link 13 91,426,621 91,427,417 RGD:1624291
RGD:1600115
G Fcna ficolin A JBrowse link 3 2,850,006 2,853,230 RGD:1624291
G Fcnb ficolin B JBrowse link 3 6,617,816 6,626,193 RGD:1624291
G Gsn gelsolin JBrowse link 3 14,456,106 14,508,922 RGD:1624291
G Ifitm1 interferon induced transmembrane protein 1 JBrowse link 1 213,765,825 213,767,841 RGD:1624291
RGD:13792537
G Ifitm2 interferon induced transmembrane protein 2 JBrowse link 1 213,750,219 213,751,399 RGD:1624291
RGD:13792537
G Ifitm3 interferon induced transmembrane protein 3 JBrowse link 1 213,810,712 213,811,821 RGD:1624291
RGD:13792537
G Ifitm6 interferon induced transmembrane protein 6 JBrowse link 1 213,816,966 213,856,570 RGD:13792537
G Mid2 midline 2 JBrowse link X 112,019,897 112,121,980 RGD:1624291
G Mre11 MRE11 homolog, double strand break repair nuclease JBrowse link 8 13,304,355 13,350,329 RGD:8693392
G Nbn nibrin JBrowse link 5 29,622,347 29,656,877 RGD:8693392
G Ptx3 pentraxin 3 JBrowse link 2 158,097,843 158,103,653 RGD:1624291
G Rad50 RAD50 double strand break repair protein JBrowse link 10 39,002,130 39,054,042 RGD:8693392
G RGD1561738 similar to interferon induced transmembrane protein 2 (1-8D) JBrowse link 13 73,661,005 73,661,699 RGD:13792537
G RGD1565332 similar to interferon induced transmembrane protein 3 JBrowse link 14 65,152,594 65,153,013 RGD:13792537
G Snx3 sorting nexin 3 JBrowse link 20 47,225,382 47,263,390 RGD:1624291
G Trim10 tripartite motif-containing 10 JBrowse link 20 2,182,945 2,191,640 RGD:1624291
G Trim11 tripartite motif-containing 11 JBrowse link 10 45,322,199 45,335,030 RGD:1624291
G Trim25 tripartite motif-containing 25 JBrowse link 10 76,343,847 76,362,159 RGD:1624291
G Trim26 tripartite motif-containing 26 JBrowse link 20 2,201,685 2,224,481 RGD:1600115
RGD:1624291
G Trim31 tripartite motif-containing 31 JBrowse link 20 2,146,245 2,159,875 RGD:1624291
G Trim5 tripartite motif-containing 5 JBrowse link 1 169,446,774 169,463,760 RGD:1624291
G Trim59 tripartite motif-containing 59 JBrowse link 2 165,629,903 165,641,751 RGD:1624291
G Trim8 tripartite motif-containing 8 JBrowse link 1 266,255,797 266,270,694 RGD:1624291
negative regulation of viral genome replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07015596.1 RGD:13792537
G AABR07021463.1 RGD:13792537
G Adar adenosine deaminase, RNA-specific JBrowse link 2 189,045,551 189,085,448 RGD:1624291
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 JBrowse link 7 121,108,108 121,128,346 RGD:1624291
G Banf1 BAF nuclear assembly factor 1 JBrowse link 1 220,744,195 220,746,224 RGD:1624291
G Bst2 bone marrow stromal cell antigen 2 JBrowse link 16 19,938,781 19,942,353 RGD:1624291
RGD:1600115
G Ccl5 C-C motif chemokine ligand 5 JBrowse link 10 70,739,764 70,744,303 RGD:1624291
RGD:1600115
G Eif2ak2 eukaryotic translation initiation factor 2-alpha kinase 2 JBrowse link 6 1,428,845 1,466,193 RGD:1600115
RGD:1624291
G Fam111a family with sequence similarity 111, member A JBrowse link 1 229,003,778 229,019,532 RGD:1624291
G Ifitm1 interferon induced transmembrane protein 1 JBrowse link 1 213,765,825 213,767,841 RGD:13792537
G Ifitm2 interferon induced transmembrane protein 2 JBrowse link 1 213,750,219 213,751,399 RGD:1624291
RGD:13792537
G Ifitm3 interferon induced transmembrane protein 3 JBrowse link 1 213,810,712 213,811,821 RGD:1624291
RGD:13792537
G Ifitm6 interferon induced transmembrane protein 6 JBrowse link 1 213,816,966 213,856,570 RGD:13792537
G Ifnb1 interferon beta 1 JBrowse link 5 106,865,192 106,865,746 RGD:1624291
G Ilf3 interleukin enhancer binding factor 3 JBrowse link 8 22,402,877 22,440,984 RGD:1600115
RGD:1624291
G Isg15 ISG15 ubiquitin-like modifier JBrowse link 5 173,624,862 173,629,124 RGD:1624291
G Isg20 interferon stimulated exonuclease gene 20 JBrowse link 1 140,602,553 140,608,892 RGD:1624291
RGD:13792537
G LOC103689988 2'-5'-oligoadenylate synthase 1A-like JBrowse link 12 42,367,110 42,376,531 RGD:13792537
G Ltf lactotransferrin JBrowse link 8 119,290,416 119,313,261 RGD:1624291
G Mavs mitochondrial antiviral signaling protein JBrowse link 3 123,776,147 123,790,572 RGD:1624291
G Mx2 MX dynamin like GTPase 2 JBrowse link 11 38,035,306 38,066,185 RGD:1600115
RGD:1624291
G Oas1a 2'-5' oligoadenylate synthetase 1A JBrowse link 12 41,200,680 41,211,393 RGD:1624291
RGD:13792537
G Oas1b 2-5 oligoadenylate synthetase 1B JBrowse link 12 41,255,762 41,266,430 RGD:1600115
RGD:13792537
G Oas1e 2'-5' oligoadenylate synthetase 1E JBrowse link 12 41,281,479 41,290,500 RGD:13792537
G Oas1g 2'-5' oligoadenylate synthetase 1G JBrowse link 12 42,343,103 42,355,139 RGD:13792537
G Oas1h 2 ' -5 ' oligoadenylate synthetase 1H JBrowse link 12 41,214,587 41,224,254 RGD:13792537
G Oas1i 2 ' -5 ' oligoadenylate synthetase 1I JBrowse link 12 41,155,489 41,167,501 RGD:13792537
G Oas2 2'-5' oligoadenylate synthetase 2 JBrowse link 12 41,341,417 41,363,124 RGD:13792537
G Oas3 2'-5'-oligoadenylate synthetase 3 JBrowse link 12 41,313,081 41,368,217 RGD:1624291
RGD:13792537
RGD:1600115
G Oasl 2'-5'-oligoadenylate synthetase-like JBrowse link 12 47,444,138 47,456,680 RGD:1624291
RGD:13792537
G Oasl2 2'-5' oligoadenylate synthetase-like 2 JBrowse link 12 47,470,074 47,483,131 RGD:13792537
G Parp10 poly (ADP-ribose) polymerase family, member 10 JBrowse link 7 117,291,592 117,300,878 RGD:1624291
G Plscr1 phospholipid scramblase 1 JBrowse link 8 99,625,523 99,645,882 RGD:1600115
RGD:1624291
G Prox1 prospero homeobox 1 JBrowse link 13 108,382,536 108,444,107 RGD:1624291
G RGD1561738 similar to interferon induced transmembrane protein 2 (1-8D) JBrowse link 13 73,661,005 73,661,699 RGD:13792537
G RGD1565332 similar to interferon induced transmembrane protein 3 JBrowse link 14 65,152,594 65,153,013 RGD:13792537
G Rnasel ribonuclease L JBrowse link 13 71,188,712 71,202,636 RGD:1624291
RGD:13792537
G Rsad2 radical S-adenosyl methionine domain containing 2 JBrowse link 6 45,655,947 45,669,083 RGD:1600115
RGD:1624291
G Shfl shiftless antiviral inhibitor of ribosomal frameshifting JBrowse link 8 21,890,214 21,896,045 RGD:1600115
RGD:1624291
G Slpi secretory leukocyte peptidase inhibitor JBrowse link 3 160,799,979 160,802,228 RGD:1624291
G Srpk1 SRSF protein kinase 1 JBrowse link 20 5,829,412 5,865,877 RGD:1624291
G Srpk2 SRSF protein kinase 2 JBrowse link 4 7,994,025 8,187,455 RGD:1624291
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:1624291
G Trim6 tripartite motif containing 6 JBrowse link 1 169,410,084 169,423,305 RGD:1624291
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 JBrowse link 4 66,012,111 66,062,160 RGD:8554819
RGD:1624291
RGD:1600115
negative regulation of viral life cycle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:1624291
negative regulation of viral process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apcs amyloid P component, serum JBrowse link 13 91,426,621 91,427,417 RGD:1624291
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 JBrowse link 7 121,108,108 121,128,346 RGD:1624291
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:1624291
G Ltf lactotransferrin JBrowse link 8 119,290,416 119,313,261 RGD:1624291
G Mbl2 mannose binding lectin 2 JBrowse link 1 248,435,069 248,442,669 RGD:1624291
negative regulation of viral release from host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chmp3 charged multivesicular body protein 3 JBrowse link 4 99,449,213 99,496,156 RGD:1624291
G Mid2 midline 2 JBrowse link X 112,019,897 112,121,980 RGD:1624291
G Pml PML nuclear body scaffold JBrowse link 8 63,002,515 63,034,310 RGD:1624291
G Trim11 tripartite motif-containing 11 JBrowse link 10 45,322,199 45,335,030 RGD:1624291
G Trim13 tripartite motif-containing 13 JBrowse link 15 41,897,191 41,936,545 RGD:1624291
G Trim15 tripartite motif containing 15 JBrowse link 20 2,194,293 2,203,636 RGD:1624291
G Trim21 tripartite motif-containing 21 JBrowse link 1 167,686,148 167,708,735 RGD:1624291
G Trim25 tripartite motif-containing 25 JBrowse link 10 76,343,847 76,362,159 RGD:1624291
G Trim26 tripartite motif-containing 26 JBrowse link 20 2,201,685 2,224,481 RGD:1600115
RGD:1624291
G Trim27 tripartite motif-containing 27 JBrowse link 17 45,613,863 45,626,212 RGD:1624291
G Trim28 tripartite motif-containing 28 JBrowse link 1 65,544,369 65,551,043 RGD:1624291
G Trim32 tripartite motif-containing 32 JBrowse link 5 81,431,554 81,449,023 RGD:1624291
G Trim35 tripartite motif-containing 35 JBrowse link 15 42,960,255 42,976,798 RGD:1600115
RGD:1624291
G Trim5 tripartite motif-containing 5 JBrowse link 1 169,446,774 169,463,760 RGD:1624291
G Trim8 tripartite motif-containing 8 JBrowse link 1 266,255,797 266,270,694 RGD:1624291
negative regulation of viral transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ifitm3 interferon induced transmembrane protein 3 JBrowse link 1 213,810,712 213,811,821 RGD:1624291
G Mid2 midline 2 JBrowse link X 112,019,897 112,121,980 RGD:1624291
G Sp100 SP100 nuclear antigen JBrowse link 9 92,675,103 92,718,489 RGD:1624291
G Trim11 tripartite motif-containing 11 JBrowse link 10 45,322,199 45,335,030 RGD:1624291
G Trim13 tripartite motif-containing 13 JBrowse link 15 41,897,191 41,936,545 RGD:1624291
G Trim14 tripartite motif-containing 14 JBrowse link 5 62,128,941 62,154,424 RGD:1624291
G Trim21 tripartite motif-containing 21 JBrowse link 1 167,686,148 167,708,735 RGD:1624291
G Trim27 tripartite motif-containing 27 JBrowse link 17 45,613,863 45,626,212 RGD:1624291
RGD:13792537
G Trim31 tripartite motif-containing 31 JBrowse link 20 2,146,245 2,159,875 RGD:1624291
G Trim32 tripartite motif-containing 32 JBrowse link 5 81,431,554 81,449,023 RGD:1624291
G Trim62 tripartite motif-containing 62 JBrowse link 5 147,068,725 147,099,024 RGD:1624291
G Trim8 tripartite motif-containing 8 JBrowse link 1 266,255,797 266,270,694 RGD:1624291
G Ubp1 upstream binding protein 1 JBrowse link 8 122,196,576 122,241,368 RGD:1624291
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
RGD:1600115
negative stranded viral RNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg16l1 autophagy related 16-like 1 JBrowse link 9 94,879,876 94,915,231 RGD:1624291
RGD:13792537
G Atg16l2 autophagy related 16-like 2 JBrowse link 1 166,401,271 166,415,078 RGD:1624291
RGD:13792537
G Atg5 autophagy related 5 JBrowse link 20 49,301,783 49,393,147 RGD:1624291
RGD:1600115
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:1624291
positive regulation by host of viral genome replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link 8 44,989,401 44,993,261 RGD:1624291
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 JBrowse link 13 48,679,726 48,709,663 RGD:1624291
G Ppib peptidylprolyl isomerase B JBrowse link 8 71,719,681 71,725,538 RGD:1624291
G Stom stomatin JBrowse link 3 14,515,576 14,538,199 RGD:1624291
G Tbc1d20 TBC1 domain family, member 20 JBrowse link 3 147,772,006 147,790,946 RGD:1624291
G Vapa VAMP associated protein A JBrowse link 9 113,300,831 113,331,872 RGD:1624291
G Vapb VAMP associated protein B and C JBrowse link 3 171,832,558 171,871,042 RGD:1624291
G Ythdc2 YTH domain containing 2 JBrowse link 1 182,072,386 182,141,399 RGD:1624291
positive regulation by host of viral process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anxa2 annexin A2 JBrowse link 8 75,687,134 75,723,589 RGD:1624291
G Apoe apolipoprotein E JBrowse link 1 80,612,894 80,616,820 RGD:1624291
RGD:1600115
G Cav2 caveolin 2 JBrowse link 4 44,573,264 44,580,640 RGD:1624291
G Ceacam1 CEA cell adhesion molecule 1 JBrowse link 1 82,327,955 82,344,345 RGD:1624291
G Cfl1 cofilin 1 JBrowse link 1 220,869,805 220,873,337 RGD:1624291
G Csf1r colony stimulating factor 1 receptor JBrowse link 18 56,414,493 56,458,300 RGD:1600115
RGD:1624291
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:1624291
G Igf2r insulin-like growth factor 2 receptor JBrowse link 1 48,176,095 48,264,482 RGD:1624291
G LOC100911237 zinc finger protein 420-like JBrowse link 1 31,494,043 31,519,034 RGD:1624291
G Pc pyruvate carboxylase JBrowse link 1 219,759,157 219,859,854 RGD:1624291
G Ppib peptidylprolyl isomerase B JBrowse link 8 71,719,681 71,725,538 RGD:1624291
positive regulation by host of viral release from host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cav2 caveolin 2 JBrowse link 4 44,573,264 44,580,640 RGD:1624291
RGD:1600115
G LOC100911237 zinc finger protein 420-like JBrowse link 1 31,494,043 31,519,034 RGD:1624291
G Pc pyruvate carboxylase JBrowse link 1 219,759,157 219,859,854 RGD:1624291
RGD:1600115
G Vapa VAMP associated protein A JBrowse link 9 113,300,831 113,331,872 RGD:1624291
G Vapb VAMP associated protein B and C JBrowse link 3 171,832,558 171,871,042 RGD:1624291
positive regulation by host of viral transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chd1 chromodomain helicase DNA binding protein 1 JBrowse link 1 57,692,828 57,756,762 RGD:1624291
G Ctdp1 CTD phosphatase subunit 1 JBrowse link 18 76,922,913 76,985,095 RGD:1624291
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:1624291
G Fkbp8 FKBP prolyl isomerase 8 JBrowse link 16 20,645,956 20,652,890 RGD:1624291
G Gtf2b general transcription factor IIB JBrowse link 2 248,709,433 248,727,741 RGD:1600115
RGD:1624291
G Hpn hepsin JBrowse link 1 89,534,112 89,549,575 RGD:1600115
RGD:1624291
G Jun Jun proto-oncogene, AP-1 transcription factor subunit JBrowse link 5 114,011,184 114,014,277 RGD:1624291
G Lef1 lymphoid enhancer binding factor 1 JBrowse link 2 236,232,115 236,345,061 RGD:1600115
RGD:1624291
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 JBrowse link 13 48,679,726 48,709,663 RGD:1624291
G Rrp1b ribosomal RNA processing 1B JBrowse link 20 10,844,234 10,869,830 RGD:1624291
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:1624291
RGD:1600115
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 20 13,679,955 13,702,821 RGD:1624291
G Snw1 SNW domain containing 1 JBrowse link 6 111,483,698 111,507,782 RGD:1624291
G Sp1 Sp1 transcription factor JBrowse link 7 144,014,173 144,044,635 RGD:1624291
G Taf11 TATA-box binding protein associated factor 11 JBrowse link 20 7,476,648 7,484,417 RGD:1624291
G Tfap4 transcription factor AP-4 JBrowse link 10 11,204,616 11,222,975 RGD:1624291
G Zfp639 zinc finger protein 639 JBrowse link 2 118,906,479 118,917,491 RGD:1624291
RGD:1600115
positive regulation by virus of viral protein levels in host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddb1 damage-specific DNA binding protein 1 JBrowse link 1 226,657,561 226,683,356 RGD:1624291
RGD:1600115
G Hacd3 3-hydroxyacyl-CoA dehydratase 3 JBrowse link 8 70,471,572 70,509,874 RGD:1624291
G Stau1 staufen double-stranded RNA binding protein 1 JBrowse link 3 163,703,204 163,748,996 RGD:1624291
G Tbc1d20 TBC1 domain family, member 20 JBrowse link 3 147,772,006 147,790,946 RGD:1624291
positive regulation of apoptotic process by virus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bad BCL2-associated agonist of cell death JBrowse link 1 222,198,516 222,207,459 RGD:1624291
G Bcl2l11 BCL2 like 11 JBrowse link 3 120,726,906 120,764,192 RGD:1624291
G Ccr5 C-C motif chemokine receptor 5 JBrowse link 8 133,192,398 133,215,599 RGD:4890424
positive regulation of intracellular transport of viral material term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:1600115
RGD:1624291
positive regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Top2a DNA topoisomerase II alpha JBrowse link 10 86,901,467 86,930,947 RGD:1600115
RGD:1624291
G Top2b DNA topoisomerase II beta JBrowse link 15 10,262,972 10,319,741 RGD:1624291
positive regulation of viral budding via host ESCRT complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tsg101 tumor susceptibility 101 JBrowse link 1 102,941,151 102,971,017 RGD:1624291
G Vps37b VPS37B subunit of ESCRT-I JBrowse link 12 37,984,790 38,023,369 RGD:1624291
G Vps4a vacuolar protein sorting 4 homolog A JBrowse link 19 39,230,050 39,243,298 RGD:1624291
positive regulation of viral entry into host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bsg basigin (Ok blood group) JBrowse link 7 12,875,536 12,882,753 RGD:1624291
G Cd4 Cd4 molecule JBrowse link 4 157,381,862 157,408,357 RGD:1624291
G Cd74 CD74 molecule JBrowse link 18 56,071,420 56,080,851 RGD:1624291
G Lgals1 galectin 1 JBrowse link 7 120,153,184 120,156,290 RGD:1624291
G Lgals9 galectin 9 JBrowse link 10 64,737,022 64,760,195 RGD:1624291
G Nectin1 nectin cell adhesion molecule 1 JBrowse link 8 48,094,233 48,198,499 RGD:1624291
G P4hb prolyl 4-hydroxylase subunit beta JBrowse link 10 109,736,459 109,748,070 RGD:1624291
G RT1-Db1 RT1 class II, locus Db1 JBrowse link 20 4,087,621 4,097,190 RGD:1624291
G Tmprss2 transmembrane serine protease 2 JBrowse link 11 38,063,914 38,103,406 RGD:1624291
G Trim11 tripartite motif-containing 11 JBrowse link 10 45,322,199 45,335,030 RGD:1624291
G Trim21 tripartite motif-containing 21 JBrowse link 1 167,686,148 167,708,735 RGD:1624291
G Trim38 tripartite motif containing 38 JBrowse link 17 43,600,006 43,607,879 RGD:1624291
positive regulation of viral genome replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adar adenosine deaminase, RNA-specific JBrowse link 2 189,045,551 189,085,448 RGD:1600115
RGD:1624291
G Adarb1 adenosine deaminase, RNA-specific, B1 JBrowse link 20 11,972,352 12,101,022 RGD:1600115
RGD:1624291
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
G Ddb1 damage-specific DNA binding protein 1 JBrowse link 1 226,657,561 226,683,356 RGD:1624291
RGD:1600115
G Ddx3x DEAD-box helicase 3, X-linked JBrowse link X 10,400,363 10,414,010 RGD:1624291
G Fkbp6 FKBP prolyl isomerase 6 JBrowse link 12 24,365,941 24,438,088 RGD:1624291
G Hacd3 3-hydroxyacyl-CoA dehydratase 3 JBrowse link 8 70,471,572 70,509,874 RGD:1624291
G Larp1 La ribonucleoprotein 1, translational regulator JBrowse link 10 43,435,738 43,501,186 RGD:1624291
G Notch1 notch receptor 1 JBrowse link 3 3,905,562 3,951,015 RGD:1624291
G Nr5a2 nuclear receptor subfamily 5, group A, member 2 JBrowse link 13 53,750,470 53,870,288 RGD:1624291
G Pabpc1 poly(A) binding protein, cytoplasmic 1 JBrowse link 7 75,409,581 75,421,874 RGD:1624291
G Pde12 phosphodiesterase 12 JBrowse link 16 2,357,028 2,367,069 RGD:1600115
RGD:1624291
G Pkn2 protein kinase N2 JBrowse link 2 248,735,699 248,840,735 RGD:1624291
RGD:1600115
G Ppia peptidylprolyl isomerase A JBrowse link 14 86,673,775 86,677,443 RGD:1624291
G Ppid peptidylprolyl isomerase D JBrowse link 2 178,354,830 178,366,843 RGD:1624291
G Ppie peptidylprolyl isomerase E JBrowse link 5 140,822,141 140,835,244 RGD:1624291
G Ppih peptidylprolyl isomerase H JBrowse link 5 138,343,934 138,361,743 RGD:1624291
G Rad23a RAD23 homolog A, nucleotide excision repair protein JBrowse link 19 25,949,488 25,956,677 RGD:1624291
G Srpk1 SRSF protein kinase 1 JBrowse link 20 5,829,412 5,865,877 RGD:1624291
G Srpk2 SRSF protein kinase 2 JBrowse link 4 7,994,025 8,187,455 RGD:1624291
G Stau1 staufen double-stranded RNA binding protein 1 JBrowse link 3 163,703,204 163,748,996 RGD:1624291
G Tarbp2 TARBP2 subunit of RISC loading complex JBrowse link 7 144,121,688 144,126,860 RGD:1624291
RGD:1600115
G Tmem39a transmembrane protein 39a JBrowse link 11 64,723,181 64,752,514 RGD:1624291
G Trim38 tripartite motif containing 38 JBrowse link 17 43,600,006 43,607,879 RGD:1624291
G Vapb VAMP associated protein B and C JBrowse link 3 171,832,558 171,871,042 RGD:1624291
RGD:1600115
positive regulation of viral life cycle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anxa2 annexin A2 JBrowse link 8 75,687,134 75,723,589 RGD:1624291
G Kpna2 karyopherin subunit alpha 2 JBrowse link 10 95,200,029 95,212,111 RGD:1624291
G Kpna6 karyopherin subunit alpha 6 JBrowse link 5 147,852,738 147,867,600 RGD:1624291
G Vps4a vacuolar protein sorting 4 homolog A JBrowse link 19 39,230,050 39,243,298 RGD:1624291
G Vps4b vacuolar protein sorting 4 homolog B JBrowse link 13 26,825,261 26,850,460 RGD:1624291
positive regulation of viral process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rab7a RAB7A, member RAS oncogene family JBrowse link 4 119,910,461 119,963,065 RGD:1624291
G Stom stomatin JBrowse link 3 14,515,576 14,538,199 RGD:1624291
G Tmem250 transmembrane protein 250 JBrowse link 3 3,590,783 3,594,475 RGD:1624291
G Vps4a vacuolar protein sorting 4 homolog A JBrowse link 19 39,230,050 39,243,298 RGD:1600115
RGD:1624291
G Vps4b vacuolar protein sorting 4 homolog B JBrowse link 13 26,825,261 26,850,460 RGD:1624291
positive regulation of viral release from host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chmp2a charged multivesicular body protein 2A JBrowse link 1 65,540,808 65,543,708 RGD:1624291
G Chmp2b charged multivesicular body protein 2B JBrowse link 11 2,666,405 2,692,213 RGD:1624291
G Chmp3 charged multivesicular body protein 3 JBrowse link 4 99,449,213 99,496,156 RGD:1624291
G Chmp4b charged multivesicular body protein 4B JBrowse link 3 150,188,275 150,227,453 RGD:1624291
G Chmp4c charged multivesicular body protein 4C JBrowse link 2 93,574,554 93,641,497 RGD:1600115
RGD:1624291
G Ddb1 damage-specific DNA binding protein 1 JBrowse link 1 226,657,561 226,683,356 RGD:1624291
RGD:1600115
G Tsg101 tumor susceptibility 101 JBrowse link 1 102,941,151 102,971,017 RGD:1624291
G Vps37b VPS37B subunit of ESCRT-I JBrowse link 12 37,984,790 38,023,369 RGD:1624291
G Vps4a vacuolar protein sorting 4 homolog A JBrowse link 19 39,230,050 39,243,298 RGD:1624291
G Vps4b vacuolar protein sorting 4 homolog B JBrowse link 13 26,825,261 26,850,460 RGD:1624291
positive regulation of viral transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx9 DExH-box helicase 9 JBrowse link 13 70,885,503 70,922,278 RGD:1624291
G Gtf2b general transcription factor IIB JBrowse link 2 248,709,433 248,727,741 RGD:1624291
G Map3k1 mitogen-activated protein kinase kinase kinase 1 JBrowse link 2 43,329,516 43,393,203 RGD:2293493
G Mdfic MyoD family inhibitor domain containing JBrowse link 4 42,202,546 42,282,499 RGD:1624291
RGD:13792537
G Notch1 notch receptor 1 JBrowse link 3 3,905,562 3,951,015 RGD:1624291
G Pfn1 profilin 1 JBrowse link 10 57,273,003 57,275,708 RGD:2324854
G Rsf1 remodeling and spacing factor 1 JBrowse link 1 162,549,222 162,671,962 RGD:1624291
positive regulation of viral translation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx9 DExH-box helicase 9 JBrowse link 13 70,885,503 70,922,278 RGD:1624291
receptor-mediated endocytosis of virus by host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cav1 caveolin 1 JBrowse link 4 44,597,123 44,630,206 RGD:1624291
RGD:1600115
G Cav2 caveolin 2 JBrowse link 4 44,573,264 44,580,640 RGD:1624291
RGD:1600115
G Ctsl cathepsin L JBrowse link 17 1,873,105 1,879,266 RGD:1624291
G Eps15 epidermal growth factor receptor pathway substrate 15 JBrowse link 5 128,923,809 129,022,268 RGD:1624291
G LOC100294508 dyslexia susceptibility 2-like JBrowse link 5 144,779,306 144,872,271 RGD:1624291
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing JBrowse link 9 71,911,744 72,005,816 RGD:1624291
G Tpcn2 two pore segment channel 2 JBrowse link 1 218,419,182 218,448,902 RGD:1624291
receptor-mediated virion attachment to host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ace2 angiotensin I converting enzyme 2 JBrowse link X 32,050,734 32,095,860 RGD:1600115
RGD:1624291
G Gas6 growth arrest specific 6 JBrowse link 16 81,213,364 81,243,824 RGD:1624291
RGD:1600115
G Grm1 glutamate metabotropic receptor 1 JBrowse link 1 4,753,141 5,165,859 RGD:1600115
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:1624291
G Lrrc15 leucine rich repeat containing 15 JBrowse link 11 74,040,846 74,052,179 RGD:1600115
RGD:1624291
regulation of viral budding via host ESCRT complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Snf8 SNF8 subunit of ESCRT-II JBrowse link 10 83,856,331 83,868,621 RGD:1624291
regulation of viral entry into host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hs3st5 heparan sulfate-glucosamine 3-sulfotransferase 5 JBrowse link 20 40,236,437 40,545,502 RGD:1624291
G Nectin2 nectin cell adhesion molecule 2 JBrowse link 1 80,631,449 80,666,617 RGD:1624291
RGD:13792537
G Trim14 tripartite motif-containing 14 JBrowse link 5 62,128,941 62,154,424 RGD:13792537
G Trim21 tripartite motif-containing 21 JBrowse link 1 167,686,148 167,708,735 RGD:13792537
G Trim25 tripartite motif-containing 25 JBrowse link 10 76,343,847 76,362,159 RGD:1624291
G Trim27 tripartite motif-containing 27 JBrowse link 17 45,613,863 45,626,212 RGD:13792537
G Trim30c tripartite motif-containing 30C JBrowse link 1 169,492,786 169,514,195 RGD:13792537
G Trim34 tripartite motif-containing 34 JBrowse link 1 169,433,539 169,445,041 RGD:13792537
G Trim5 tripartite motif-containing 5 JBrowse link 1 169,446,774 169,463,760 RGD:13792537
G Trim6 tripartite motif containing 6 JBrowse link 1 169,410,084 169,423,305 RGD:13792537
G Trim62 tripartite motif-containing 62 JBrowse link 5 147,068,725 147,099,024 RGD:1624291
G Trim68 tripartite motif containing 68 JBrowse link 1 167,835,773 167,849,880 RGD:13792537
G Triml1 tripartite motif family-like 1 JBrowse link 16 52,169,426 52,177,548 RGD:13792537
G Triml2 tripartite motif family-like 2 JBrowse link 16 52,116,975 52,127,591 RGD:13792537
regulation of viral genome replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2 BCL2, apoptosis regulator JBrowse link 13 26,605,426 26,769,374 RGD:1600115
RGD:1624291
G Ddx5 DEAD-box helicase 5 JBrowse link 10 94,979,759 94,988,461 RGD:5128521
G Dicer1 dicer 1 ribonuclease III JBrowse link 6 128,388,084 128,453,234 RGD:1624291
G Mir24-2 microRNA 24-2 JBrowse link 19 25,318,863 25,318,970 RGD:1624291
G Mir93 microRNA 93 JBrowse link 12 19,307,543 19,307,629 RGD:1624291
G Ppia peptidylprolyl isomerase A JBrowse link 14 86,673,775 86,677,443 RGD:1624291
RGD:1600115
G Ppial4d peptidylprolyl isomerase A (cyclophilin A)-like 4D JBrowse link 14 22,706,906 22,707,648 RGD:1600115
regulation of viral life cycle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 JBrowse link 7 121,108,108 121,128,346 RGD:1624291
G Lamp3 lysosomal-associated membrane protein 3 JBrowse link 11 84,930,965 85,000,694 RGD:1624291
regulation of viral process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chmp2a charged multivesicular body protein 2A JBrowse link 1 65,540,808 65,543,708 RGD:1624291
G Chmp3 charged multivesicular body protein 3 JBrowse link 4 99,449,213 99,496,156 RGD:1624291
G Chmp4b charged multivesicular body protein 4B JBrowse link 3 150,188,275 150,227,453 RGD:1624291
G Chmp4c charged multivesicular body protein 4C JBrowse link 2 93,574,554 93,641,497 RGD:1624291
G Cxcr4 C-X-C motif chemokine receptor 4 JBrowse link 13 45,314,952 45,318,856 RGD:11352687
G Vps4b vacuolar protein sorting 4 homolog B JBrowse link 13 26,825,261 26,850,460 RGD:1624291
regulation of viral release from host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trim25 tripartite motif-containing 25 JBrowse link 10 76,343,847 76,362,159 RGD:1624291
G Trim31 tripartite motif-containing 31 JBrowse link 20 2,146,245 2,159,875 RGD:1624291
G Trim62 tripartite motif-containing 62 JBrowse link 5 147,068,725 147,099,024 RGD:1624291
G Tsg101 tumor susceptibility 101 JBrowse link 1 102,941,151 102,971,017 RGD:1624291
regulation of viral transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tarbp2 TARBP2 subunit of RISC loading complex JBrowse link 7 144,121,688 144,126,860 RGD:1624291
RGD:1600115
release from viral latency term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Creb3 cAMP responsive element binding protein 3 JBrowse link 5 59,063,532 59,068,196 RGD:1624291
G Hcfc1 host cell factor C1 JBrowse link X 156,812,012 156,837,227 RGD:1624291
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 JBrowse link 13 48,679,726 48,709,663 RGD:1624291
single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 20 13,679,955 13,702,821 RGD:1624291
suppression by virus of host apoptotic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bad BCL2-associated agonist of cell death JBrowse link 1 222,198,516 222,207,459 RGD:1624291
G Bcl2l1 Bcl2-like 1 JBrowse link 3 148,259,594 148,314,191 RGD:1624291
suppression by virus of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:1624291
transformation of host cell by virus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 7 144,865,302 144,871,592 RGD:10045968
G Hyal2 hyaluronidase 2 JBrowse link 8 116,324,062 116,328,978 RGD:633153
RGD:1624291
RGD:1600115
G Insr insulin receptor JBrowse link 12 1,682,527 1,816,414 RGD:1624291
RGD:1600115
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:2325807
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:7207780
viral budding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chmp4b charged multivesicular body protein 4B JBrowse link 3 150,188,275 150,227,453 RGD:1624291
G Chmp5 charged multivesicular body protein 5 JBrowse link 5 57,267,312 57,284,455 RGD:1624291
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 3 11,970,401 12,009,463 RGD:1624291
G Mvb12a multivesicular body subunit 12A JBrowse link 16 19,973,611 19,978,479 RGD:1624291
RGD:13792537
G Mvb12b multivesicular body subunit 12B JBrowse link 3 12,780,196 12,944,542 RGD:1624291
RGD:13792537
G Nedd4 NEDD4 E3 ubiquitin protein ligase JBrowse link 8 79,323,408 79,408,842 RGD:1624291
RGD:1600115
G Pdcd6ip programmed cell death 6 interacting protein JBrowse link 8 121,916,233 121,973,145 RGD:1624291
G Tsg101 tumor susceptibility 101 JBrowse link 1 102,941,151 102,971,017 RGD:1624291
RGD:1600115
G Vta1 vesicle trafficking 1 JBrowse link 1 8,830,405 8,878,191 RGD:1624291
viral budding via host ESCRT complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chmp1b charged multivesicular body protein 1B JBrowse link 18 62,923,620 62,926,150 RGD:1624291
G Chmp2a charged multivesicular body protein 2A JBrowse link 1 65,540,808 65,543,708 RGD:1624291
G Chmp2b charged multivesicular body protein 2B JBrowse link 11 2,666,405 2,692,213 RGD:1624291
G Chmp3 charged multivesicular body protein 3 JBrowse link 4 99,449,213 99,496,156 RGD:1624291
G Chmp4b charged multivesicular body protein 4B JBrowse link 3 150,188,275 150,227,453 RGD:1624291
G Chmp6 charged multivesicular body protein 6 JBrowse link 10 109,073,678 109,079,348 RGD:1624291
G Mitd1 microtubule interacting and trafficking domain containing 1 JBrowse link 9 44,472,364 44,483,723 RGD:1624291
G Pdcd6ip programmed cell death 6 interacting protein JBrowse link 8 121,916,233 121,973,145 RGD:1624291
G Vps4a vacuolar protein sorting 4 homolog A JBrowse link 19 39,230,050 39,243,298 RGD:1624291
G Vps4b vacuolar protein sorting 4 homolog B JBrowse link 13 26,825,261 26,850,460 RGD:1624291
viral capsid secondary envelopment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ist1 IST1 factor associated with ESCRT-III JBrowse link 19 41,968,692 41,990,843 RGD:1624291
viral entry into host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ace2 angiotensin I converting enzyme 2 JBrowse link X 32,050,734 32,095,860 RGD:1600115
RGD:1624291
G Axl Axl receptor tyrosine kinase JBrowse link 1 82,550,892 82,580,761 RGD:1624291
G Cd300lf Cd300 molecule-like family member F JBrowse link 10 103,669,781 103,690,584 RGD:1600115
G Cd55 CD55 molecule (Cromer blood group) JBrowse link 13 47,125,156 47,153,557 RGD:1600115
G Cd81 Cd81 molecule JBrowse link 1 216,237,663 216,253,460 RGD:1600115
G Ceacam1 CEA cell adhesion molecule 1 JBrowse link 1 82,327,955 82,344,345 RGD:1624291
G Cldn1 claudin 1 JBrowse link 11 77,815,216 77,830,373 RGD:1600115
G Cldn6 claudin 6 JBrowse link 10 12,999,256 13,002,860 RGD:1600115
G Cldn9 claudin 9 JBrowse link 10 13,003,010 13,004,441 RGD:1600115
G Clec4m C-type lectin domain family 4 member M JBrowse link 12 2,817,633 2,826,303 RGD:1600115
G Clec5a C-type lectin domain containing 5A JBrowse link 4 68,810,330 68,819,921 RGD:1600115
G Ctsb cathepsin B JBrowse link 15 46,316,741 46,337,613 RGD:1624291
RGD:1600115
G Ctsl cathepsin L JBrowse link 17 1,873,105 1,879,266 RGD:1624291
G Dpp4 dipeptidylpeptidase 4 JBrowse link 3 48,291,055 48,372,672 RGD:1600115
G Dppa1 developmental pluripotency associated 1 JBrowse link 10 31,693,219 31,712,924 RGD:1600115
G Eps15 epidermal growth factor receptor pathway substrate 15 JBrowse link 5 128,923,809 129,022,268 RGD:1624291
G Gas6 growth arrest specific 6 JBrowse link 16 81,213,364 81,243,824 RGD:1624291
RGD:1600115
G Gpr15 G protein-coupled receptor 15 JBrowse link 11 43,992,739 44,004,189 RGD:1624291
G Grk2 G protein-coupled receptor kinase 2 JBrowse link 1 219,536,220 219,544,329 RGD:1624291
RGD:1600115
G Havcr1 hepatitis A virus cellular receptor 1 JBrowse link 10 31,813,819 31,860,934 RGD:1600115
G Hyal1 hyaluronidase 1 JBrowse link 8 116,332,834 116,337,522 RGD:1600115
G Hyal2 hyaluronidase 2 JBrowse link 8 116,324,062 116,328,978 RGD:633153
G Hyal3 hyaluronidase 3 JBrowse link 8 116,336,512 116,342,147 RGD:1600115
G Itgav integrin subunit alpha V JBrowse link 3 71,113,269 71,205,958 RGD:1624291
G Itgb3 integrin subunit beta 3 JBrowse link 10 92,667,869 92,783,413 RGD:1624291
G Lamp3 lysosomal-associated membrane protein 3 JBrowse link 11 84,930,965 85,000,694 RGD:1624291
G LOC100359777 mCG12681-like JBrowse link 10 31,603,613 31,620,449 RGD:1600115
G LOC689968 similar to kidney injury molecule 1 JBrowse link 10 31,647,519 31,661,204 RGD:1600115
G Nectin1 nectin cell adhesion molecule 1 JBrowse link 8 48,094,233 48,198,499 RGD:1599797
G Nectin4 nectin cell adhesion molecule 4 JBrowse link 13 89,755,665 89,774,185 RGD:1600115
G Npc1 NPC intracellular cholesterol transporter 1 JBrowse link 18 3,616,878 3,662,656 RGD:1624291
G Phb prohibitin JBrowse link 10 83,476,107 83,488,878 RGD:1624291
G Pvr PVR cell adhesion molecule JBrowse link 1 80,820,306 80,835,712 RGD:1600115
G Serpinb3 serpin family B member 3 JBrowse link 13 27,186,701 27,193,211 RGD:1600115
G Siglec1 sialic acid binding Ig like lectin 1 JBrowse link 3 123,612,067 123,631,718 RGD:1624291
G Siva1 SIVA1, apoptosis-inducing factor JBrowse link 6 137,209,999 137,214,379 RGD:1600115
G Timd2 T-cell immunoglobulin and mucin domain containing 2 JBrowse link 10 31,755,473 31,796,423 RGD:1600115
G Uvrag UV radiation resistance associated JBrowse link 1 163,844,804 164,101,568 RGD:1624291
G Vamp8 vesicle-associated membrane protein 8 JBrowse link 4 100,250,301 100,252,756 RGD:1624291
RGD:1600115
G Vps16 VPS16 core subunit of CORVET and HOPS complexes JBrowse link 3 122,947,887 122,969,543 RGD:1624291
G Vps18 VPS18 core subunit of CORVET and HOPS complexes JBrowse link 3 111,097,352 111,108,206 RGD:1624291
G Xpr1 xenotropic and polytropic retrovirus receptor 1 JBrowse link 13 72,918,552 73,056,785 RGD:1600115
G Zfp639 zinc finger protein 639 JBrowse link 2 118,906,479 118,917,491 RGD:1624291
RGD:1600115
viral genome replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gas6 growth arrest specific 6 JBrowse link 16 81,213,364 81,243,824 RGD:1624291
RGD:1600115
G Grk2 G protein-coupled receptor kinase 2 JBrowse link 1 219,536,220 219,544,329 RGD:1624291
RGD:1600115
G Kpna6 karyopherin subunit alpha 6 JBrowse link 5 147,852,738 147,867,600 RGD:1624291
G Lamtor5 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 JBrowse link 2 210,034,095 210,039,451 RGD:1600115
G Vcp valosin-containing protein JBrowse link 5 58,426,548 58,445,953 RGD:1624291
viral life cycle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Furin furin (paired basic amino acid cleaving enzyme) JBrowse link 1 142,185,092 142,198,167 RGD:1624291
RGD:1600115
G Pcsk5 proprotein convertase subtilisin/kexin type 5 JBrowse link 1 236,031,988 236,313,858 RGD:1624291
viral protein processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Spcs1 signal peptidase complex subunit 1 JBrowse link 16 7,080,389 7,081,957 RGD:1624291
G Spcs3 signal peptidase complex subunit 3 JBrowse link 16 40,050,862 40,056,296 RGD:1624291
viral release from host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ist1 IST1 factor associated with ESCRT-III JBrowse link 19 41,968,692 41,990,843 RGD:1624291
G Rab7a RAB7A, member RAS oncogene family JBrowse link 4 119,910,461 119,963,065 RGD:1624291
G Vps4a vacuolar protein sorting 4 homolog A JBrowse link 19 39,230,050 39,243,298 RGD:1624291
G Vps4b vacuolar protein sorting 4 homolog B JBrowse link 13 26,825,261 26,850,460 RGD:1624291
viral replication complex formation and maintenance term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pi4ka phosphatidylinositol 4-kinase alpha JBrowse link 11 87,858,323 87,975,549 RGD:1600115
RGD:1624291
viral RNA genome packaging term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddx6 DEAD-box helicase 6 JBrowse link 8 48,924,768 48,961,394 RGD:1624291
G Pc pyruvate carboxylase JBrowse link 1 219,759,157 219,859,854 RGD:1624291
RGD:1600115
viral RNA genome replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdc42 cell division cycle 42 JBrowse link 5 155,690,267 155,728,385 RGD:1624291
G Eea1 early endosome antigen 1 JBrowse link 7 37,101,415 37,186,534 RGD:1624291
G Pcbp1 poly(rC) binding protein 1 JBrowse link 4 118,327,185 118,329,223 RGD:1624291
G Pcbp2 poly(rC) binding protein 2 JBrowse link 7 144,077,901 144,103,723 RGD:1624291
G Pi4ka phosphatidylinositol 4-kinase alpha JBrowse link 11 87,858,323 87,975,549 RGD:1600115
RGD:1624291
G Pik3c2g phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma JBrowse link 4 173,732,196 174,102,502 RGD:1624291
G Rab29 RAB29, member RAS oncogene family JBrowse link 13 48,644,575 48,650,229 RGD:1624291
G Rab5a RAB5A, member RAS oncogene family JBrowse link 9 5,910 6,065 RGD:1624291
G Rock2 Rho-associated coiled-coil containing protein kinase 2 JBrowse link 6 42,180,864 42,289,910 RGD:1600115
RGD:1624291
viral translation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 JBrowse link 3 110,159,624 110,245,382 RGD:1624291
RGD:1600115
viral translational frameshifting term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Shfl shiftless antiviral inhibitor of ribosomal frameshifting JBrowse link 8 21,890,214 21,896,045 RGD:1600115
RGD:1624291
viral translational termination-reinitiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eif3a eukaryotic translation initiation factor 3, subunit A JBrowse link 1 282,139,809 282,170,017 RGD:1624291
G Eif3b eukaryotic translation initiation factor 3, subunit B JBrowse link 12 16,285,730 16,310,190 RGD:1624291
G Eif3d eukaryotic translation initiation factor 3, subunit D JBrowse link 7 119,188,189 119,200,578 RGD:1624291
G Eif3g eukaryotic translation initiation factor 3, subunit G JBrowse link 8 21,911,632 21,915,664 RGD:1624291
G Eif3l eukaryotic translation initiation factor 3, subunit L JBrowse link 7 120,320,547 120,331,596 RGD:1624291
virion assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apoe apolipoprotein E JBrowse link 1 80,612,894 80,616,820 RGD:1624291
RGD:1600115
G LOC100363782 RAB1B, member RAS oncogene family-like RGD:1600115
G LOC102555167 ras-related protein Rab-1B-like JBrowse link 1 220,480,828 220,491,456 RGD:1600115
G Rab1a RAB1A, member RAS oncogene family JBrowse link 14 104,475,082 104,500,176 RGD:1624291
G Rab1b RAB1B, member RAS oncogene family JBrowse link 1 220,483,529 220,491,469 RGD:1600115
RGD:1624291
G Rab43 RAB43, member RAS oncogene family JBrowse link 4 119,695,012 119,714,490 RGD:1624291
G Spcs1 signal peptidase complex subunit 1 JBrowse link 16 7,080,389 7,081,957 RGD:1624291
G Tbc1d20 TBC1 domain family, member 20 JBrowse link 3 147,772,006 147,790,946 RGD:1624291
G Usp6nl USP6 N-terminal like JBrowse link 17 75,759,428 75,887,108 RGD:1624291
virion attachment to host cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 JBrowse link 9 17,817,791 17,823,163 RGD:1624291
G Nectin1 nectin cell adhesion molecule 1 JBrowse link 8 48,094,233 48,198,499 RGD:1600115
virus maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mvb12a multivesicular body subunit 12A JBrowse link 16 19,973,611 19,978,479 RGD:1624291
RGD:13792537
G Mvb12b multivesicular body subunit 12B JBrowse link 3 12,780,196 12,944,542 RGD:1624291
RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19858
    interspecies interaction between organisms 1887
      symbiotic process 395
        viral process 329
          IRES-dependent viral translational initiation 10
          cap snatching 0
          establishment of viral latency + 1
          genome retention in viral capsid 0
          latency-replication decision 0
          latent virus replication + 3
          lysis of host organelle involved in viral entry into host cell + 0
          maintenance of viral latency 0
          modulation by virus of host process + 20
          negative regulation of viral process + 112
          permeabilization of host organelle membrane involved in viral entry into host cell + 0
          pore formation by virus in membrane of host cell 0
          positive regulation of viral process + 90
          recruitment of helicase-primase complex to DNA lesions 0
          regulation of defense response to virus by virus + 0
          regulation of viral process + 208
          release from viral latency + 3
          ribosomal skipping 0
          superinfection exclusion 0
          transport of virus + 15
          uncoating of virus 0
          viral DNA repair + 0
          viral RNA editing 0
          viral budding + 19
          viral capsid assembly + 0
          viral capsid secondary envelopment 1
          viral gene expression + 68
          viral genome circularization 0
          viral genome integration into host DNA 0
          viral genome maturation + 0
          viral genome packaging + 2
          viral genome replication + 120
          viral head-tail joining 0
          viral latency + 3
          viral life cycle + 249
          viral protein processing 2
          viral release from host cell + 33
          viral replication complex formation and maintenance 1
          viral scaffold assembly and maintenance 0
          viral tail assembly + 0
          viral transcription + 52
          viral translation + 15
          viral translational frameshifting 1
          viral translational termination-reinitiation 5
          viral tropism switching 0
          virion assembly + 30
          virion maturation 0
          virus baseplate assembly 0
          virus maturation + 2
          virus tail fiber assembly 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.