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ONTOLOGY REPORT - ANNOTATIONS


Term:rRNA metabolic process
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Accession:GO:0016072 term browser browse the term
Definition:The chemical reactions and pathways involving rRNA, ribosomal RNA, a structural constituent of ribosomes.
Synonyms:exact_synonym: rRNA metabolism


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cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link 7 117,514,529 117,538,342 RGD:1624291
G Nol9 nucleolar protein 9 JBrowse link 5 169,213,076 169,233,173 RGD:13792537
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:11535027
cleavage involved in rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 JBrowse link 10 37,069,387 37,072,758 RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:13792537
G Nob1 NIN1 (RPN12) binding protein 1 homolog JBrowse link 19 38,397,466 38,409,924 RGD:1600115
G Rrp36 ribosomal RNA processing 36 JBrowse link 9 16,618,853 16,627,128 RGD:1600115
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abt1 activator of basal transcription 1 JBrowse link 17 43,946,118 43,948,224 RGD:13792537
G Fcf1 FCF1 rRNA-processing protein JBrowse link 6 108,796,182 108,808,051 RGD:1624291
G Rcl1 RNA terminal phosphate cyclase-like 1 JBrowse link 1 247,228,012 247,272,369 RGD:1624291
G Tbl3 transducin (beta)-like 3 JBrowse link 10 14,066,984 14,072,197 RGD:13792537
G Utp23 UTP23, small subunit processome component JBrowse link 7 91,384,329 91,389,605 RGD:1624291
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abt1 activator of basal transcription 1 JBrowse link 17 43,946,118 43,948,224 RGD:13792537
G AC135409.1 RGD:13792537
G Fcf1 FCF1 rRNA-processing protein JBrowse link 6 108,796,182 108,808,051 RGD:1624291
G Kri1 KRI1 homolog JBrowse link 8 22,301,025 22,317,049 RGD:13792537
G Rcl1 RNA terminal phosphate cyclase-like 1 JBrowse link 1 247,228,012 247,272,369 RGD:1624291
G Rpp40 ribonuclease P/MRP subunit p40 JBrowse link 17 29,638,647 29,647,709 RGD:13792537
G Rps21 ribosomal protein S21 JBrowse link 3 175,629,176 175,630,198 RGD:13792537
G Rrs1 ribosome biogenesis regulator 1 homolog JBrowse link 5 9,430,710 9,432,343 RGD:13792537
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bms1 BMS1 ribosome biogenesis factor JBrowse link 4 150,433,567 150,471,783 RGD:13792537
G Rcl1 RNA terminal phosphate cyclase-like 1 JBrowse link 1 247,228,012 247,272,369 RGD:13792537
G Tsr1 TSR1, ribosome maturation factor JBrowse link 10 61,746,070 61,757,518 RGD:13792537
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC135409.1 RGD:13792537
G Rps21 ribosomal protein S21 JBrowse link 3 175,629,176 175,630,198 RGD:13792537
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abt1 activator of basal transcription 1 JBrowse link 17 43,946,118 43,948,224 RGD:13792537
G Tbl3 transducin (beta)-like 3 JBrowse link 10 14,066,984 14,072,197 RGD:13792537
enzyme-directed rRNA 2'-O-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:1600115
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:1600115
RGD:1624291
G LOC100911166 RNA pseudouridylate synthase domain-containing protein 2-like JBrowse link 3 112,519,789 112,524,281 RGD:13792537
G Rpusd1 RNA pseudouridine synthase domain containing 1 JBrowse link 10 15,099,104 15,102,968 RGD:13792537
G Rpusd2 RNA pseudouridine synthase domain containing 2 JBrowse link 3 110,835,654 110,840,903 RGD:13792537
G Tsr3 TSR3 ribosome maturation factor JBrowse link 10 14,598,014 14,600,576 RGD:1624291
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eri1 exoribonuclease 1 JBrowse link 16 60,307,148 60,327,237 RGD:13792537
G Eri3 ERI1 exoribonuclease family member 3 JBrowse link 5 136,406,009 136,533,408 RGD:13792537
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:13792537
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:13792537
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:13792537
maturation of 5.8S rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07052587.1 RGD:13792537
G AABR07064102.1 RGD:13792537
G AABR07064998.2 RGD:13792537
G AABR07065012.1 RGD:13792537
G AABR07065013.1 RGD:13792537
G C1d C1D nuclear receptor corepressor JBrowse link 14 100,415,645 100,427,878 RGD:1624291
RGD:13792537
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:13792537
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
G Exosc4 exosome component 4 JBrowse link 7 117,390,302 117,393,044 RGD:1624291
G Las1l LAS1-like, ribosome biogenesis factor JBrowse link X 65,081,591 65,102,344 RGD:13792537
G Mak16 MAK16 homolog JBrowse link 16 64,729,254 64,737,807 RGD:13792537
G Mphosph6 M phase phosphoprotein 6 JBrowse link 19 50,357,314 50,367,137 RGD:1624291
RGD:13792537
G Mtrex Mtr4 exosome RNA helicase JBrowse link 2 44,726,716 44,787,013 RGD:1624291
RGD:13792537
G Nol9 nucleolar protein 9 JBrowse link 5 169,213,076 169,233,173 RGD:1624291
G Nsa2 NSA2 ribosome biogenesis factor JBrowse link 2 27,942,546 27,949,089 RGD:13792537
G Prkdc protein kinase, DNA-activated, catalytic subunit JBrowse link 11 89,293,547 89,510,948 RGD:1624291
G Rpf1 ribosome production factor 1 homolog JBrowse link 2 252,368,316 252,382,838 RGD:13792537
G Rrp15 ribosomal RNA processing 15 homolog JBrowse link 13 105,155,824 105,178,907 RGD:13792537
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:13792537
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link 14 84,211,600 84,227,980 RGD:1624291
RGD:1600115
G Urb1 URB1 ribosome biogenesis homolog JBrowse link 11 30,916,740 30,977,423 RGD:13792537
G Wdr12 WD repeat domain 12 JBrowse link 9 66,851,499 66,878,534 RGD:1624291
RGD:13792537
RGD:1600115
maturation of 5S rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 1 220,762,496 220,771,158 RGD:13792537
maturation of LSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07003273.1 RGD:13792537
G AABR07006536.1 RGD:13792537
G AABR07007121.1 RGD:13792537
G AABR07018167.1 RGD:13792537
G AABR07027819.1 RGD:13792537
G AABR07029262.1 RGD:13792537
G AABR07030630.1 RGD:13792537
G AABR07045321.1 RGD:13792537
G AABR07049918.1 RGD:13792537
G AABR07052519.1 RGD:13792537
G AABR07052587.1 RGD:13792537
G AABR07054456.1 RGD:13792537
G AABR07057586.1 RGD:13792537
G AC094246.2 RGD:13792537
G AC128901.1 RGD:13792537
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:13792537
G Las1l LAS1-like, ribosome biogenesis factor JBrowse link X 65,081,591 65,102,344 RGD:13792537
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like JBrowse link 1 281,863,115 281,864,546 RGD:13792537
G LOC100359687 mitochondrial ribosomal protein L1-like JBrowse link 8 56,411,909 56,502,073 RGD:13792537
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 JBrowse link 10 37,069,387 37,072,758 RGD:13792537
G LOC103690888 60S ribosomal protein L10a-like JBrowse link X 112,555,128 112,555,864 RGD:13792537
G LOC108348298 ribosomal L1 domain-containing protein 1-like JBrowse link 10 4,487,809 4,499,727 RGD:13792537
G LOC108349606 60S ribosomal protein L7a-like JBrowse link 1 166,282,044 166,282,845 RGD:13792537
G Mak16 MAK16 homolog JBrowse link 16 64,729,254 64,737,807 RGD:13792537
G Mrpl1 mitochondrial ribosomal protein L1 JBrowse link 14 14,951,507 15,008,136 RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:13792537
G Nop2 NOP2 nucleolar protein JBrowse link 4 157,646,759 157,658,502 RGD:13792537
G Nsa2 NSA2 ribosome biogenesis factor JBrowse link 2 27,942,546 27,949,089 RGD:13792537
G Rpf1 ribosome production factor 1 homolog JBrowse link 2 252,368,316 252,382,838 RGD:13792537
G Rpl10a ribosomal protein L10A JBrowse link 20 7,908,309 7,910,867 RGD:13792537
G Rpl7a ribosomal protein L7a JBrowse link 3 5,458,985 5,461,627 RGD:13792537
G Rrp15 ribosomal RNA processing 15 homolog JBrowse link 13 105,155,824 105,178,907 RGD:13792537
G Rsl1d1l1 ribosomal L1 domain containing 1-like 1 JBrowse link 10 4,447,239 4,459,125 RGD:13792537
G Snu13 small nuclear ribonucleoprotein 13 JBrowse link 7 123,282,754 123,287,721 RGD:13792537
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07013798.1 RGD:13792537
G AABR07030263.1 RGD:13792537
G AABR07037343.1 RGD:13792537
G AABR07073381.1 RGD:13792537
G AC103056.1 RGD:13792537
G AC121415.1 RGD:13792537
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link 7 117,514,529 117,538,342 RGD:1624291
RGD:13792537
RGD:1600115
G Ddx18 DEAD-box helicase 18 JBrowse link 13 37,522,558 37,536,066 RGD:13792537
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:13792537
G Gtpbp4 GTP binding protein 4 JBrowse link 17 63,111,086 63,145,618 RGD:1624291
G Nifk nucleolar protein interacting with the FHA domain of MKI67 JBrowse link 13 34,267,442 34,277,543 RGD:13792537
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link 14 84,211,600 84,227,980 RGD:1624291
RGD:13792537
RGD:1600115
G Rpf2 ribosome production factor 2 homolog JBrowse link 20 45,321,381 45,342,865 RGD:13792537
G Rpl35 ribosomal protein L35 JBrowse link 3 23,294,813 23,297,774 RGD:13792537
G Rpl7 ribosomal protein L7 JBrowse link 5 2,633,517 2,636,525 RGD:13792537
RGD:1600115
G Rpl7l1 ribosomal protein L7-like 1 JBrowse link 9 16,508,477 16,516,502 RGD:13792537
G Urb1 URB1 ribosome biogenesis homolog JBrowse link 11 30,916,740 30,977,423 RGD:13792537
G Wdr12 WD repeat domain 12 JBrowse link 9 66,851,499 66,878,534 RGD:1600115
RGD:13792537
RGD:1624291
G Znhit3 zinc finger, HIT-type containing 3 JBrowse link 10 72,227,710 72,235,932 RGD:13792537
G Znhit6 zinc finger, HIT-type containing 6 JBrowse link 2 251,453,503 251,484,760 RGD:13792537
maturation of SSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddx52 DExD-box helicase 52 JBrowse link 10 71,253,667 71,276,397 RGD:13792537
G Helq helicase, POLQ-like JBrowse link 14 10,446,981 10,491,042 RGD:13792537
G LOC100359503 ribosomal protein S28-like JBrowse link 16 70,644,459 70,644,750 RGD:13792537
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like JBrowse link 1 281,863,115 281,864,546 RGD:13792537
G LOC100360750 Sm protein F-like JBrowse link 13 47,380,376 47,382,933 RGD:13792537
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 19 32,770,640 32,785,215 RGD:13792537
G Nob1 NIN1 (RPN12) binding protein 1 homolog JBrowse link 19 38,397,466 38,409,924 RGD:13792537
G Nol11 nucleolar protein 11 JBrowse link 10 95,388,223 95,408,053 RGD:1624291
G Nop14 NOP14 nucleolar protein JBrowse link 14 81,340,141 81,361,277 RGD:13792537
G Riok1 RIO kinase 1 JBrowse link 17 27,429,421 27,452,353 RGD:1624291
RGD:13792537
G Riok2 RIO kinase 2 JBrowse link 1 59,130,008 59,146,457 RGD:1624291
RGD:13792537
G Riok3 RIO kinase 3 JBrowse link 18 3,565,166 3,590,739 RGD:1624291
RGD:13792537
G Rps14 ribosomal protein S14 JBrowse link 18 56,042,532 56,047,316 RGD:1600115
G Rps19 ribosomal protein S19 JBrowse link 1 81,750,873 81,756,629 RGD:1624291
G Rps28 ribosomal protein S28 JBrowse link 7 18,682,071 18,683,440 RGD:13792537
G Snu13 small nuclear ribonucleoprotein 13 JBrowse link 7 123,282,754 123,287,721 RGD:13792537
G Srfbp1 serum response factor binding protein 1 JBrowse link 18 47,456,406 47,478,967 RGD:13792537
G Tsr3 TSR3 ribosome maturation factor JBrowse link 10 14,598,014 14,600,576 RGD:13792537
G Utp4 UTP4 small subunit processome component JBrowse link 19 39,087,995 39,116,124 RGD:1624291
G Wdr3 WD repeat domain 3 JBrowse link 2 202,447,749 202,470,398 RGD:13792537
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07005506.1 RGD:13792537
G AABR07056611.1 RGD:13792537
G Bms1 BMS1 ribosome biogenesis factor JBrowse link 4 150,433,567 150,471,783 RGD:13792537
G Bysl bystin-like JBrowse link 9 15,393,461 15,403,212 RGD:1624291
RGD:1600115
G Dcaf13 DDB1 and CUL4 associated factor 13 JBrowse link 7 78,005,232 78,040,220 RGD:13792537
G Dhx37 DEAH-box helicase 37 JBrowse link 12 36,594,058 36,614,165 RGD:13792537
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 1 80,293,574 80,307,334 RGD:1624291
G Fam207a family with sequence similarity 207, member A JBrowse link 20 11,863,145 11,896,833 RGD:1600115
G Gtf2h5 general transcription factor IIH subunit 5 JBrowse link 1 46,978,345 46,985,032 RGD:1624291
G Heatr1 HEAT repeat containing 1 JBrowse link 17 66,446,135 66,488,303 RGD:13792537
G LOC100363452 ribosomal protein S8-like JBrowse link 3 103,192,670 103,193,343 RGD:13792537
G LOC100911847 40S ribosomal protein S14-like JBrowse link 5 144,083,030 144,083,602 RGD:13792537
G LOC108348069 HEAT repeat-containing protein 1 JBrowse link 17 66,578,885 66,619,465 RGD:13792537
G LOC297756 ribosomal protein S8-like JBrowse link 5 2,799,565 2,803,855 RGD:13792537
G Mrps11 mitochondrial ribosomal protein S11 JBrowse link 1 140,477,645 140,487,249 RGD:13792537
G NEWGENE_1562416 TSR2, ribosome maturation factor JBrowse link X 20,224,112 20,232,647 RGD:13792537
G Ngdn neuroguidin JBrowse link 15 33,677,333 33,684,840 RGD:13792537
G Nol10 nucleolar protein 10 JBrowse link 6 42,656,661 42,745,099 RGD:13792537
G Pwp2 PWP2, small subunit processome component JBrowse link 20 11,228,892 11,243,204 RGD:13792537
G Rps14 ribosomal protein S14 JBrowse link 18 56,042,532 56,047,316 RGD:13792537
G Rps16 ribosomal protein S16 JBrowse link 1 85,405,499 85,408,444 RGD:13792537
G Rps19 ribosomal protein S19 JBrowse link 1 81,750,873 81,756,629 RGD:1624291
G Rps8 ribosomal protein S8 JBrowse link 5 136,020,941 136,023,511 RGD:13792537
G Rrp36 ribosomal RNA processing 36 JBrowse link 9 16,618,853 16,627,128 RGD:13792537
G Tsr1 TSR1, ribosome maturation factor JBrowse link 10 61,746,070 61,757,518 RGD:13792537
G Tsr2 TSR2, ribosome maturation factor JBrowse link X 20,141,406 20,146,082 RGD:13792537
G Utp25 UTP25, small subunit processor component JBrowse link 13 111,828,052 111,849,654 RGD:13792537
G Utp3 UTP3, small subunit processome component JBrowse link 14 21,153,998 21,155,652 RGD:13792537
G Utp4 UTP4 small subunit processome component JBrowse link 19 39,087,995 39,116,124 RGD:13792537
G Utp6 UTP6 small subunit processome component JBrowse link 10 67,255,177 67,285,754 RGD:13792537
G Wdr46 WD repeat domain 46 JBrowse link 20 5,447,860 5,455,632 RGD:13792537
negative regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kat2b lysine acetyltransferase 2B JBrowse link 9 4,440,982 4,492,949 RGD:1624291
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor JBrowse link 4
4
133,037,515
133,131,711
133,127,183
133,133,170
RGD:1624291
nonfunctional rRNA decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pelo pelota mRNA surveillance and ribosome rescue factor JBrowse link 2 47,266,758 47,268,526 RGD:13792537
nuclear polyadenylation-dependent rRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
RGD:13792537
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:13792537
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:1624291
RGD:13792537
positive regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bud23 BUD23, rRNA methyltransferase and ribosome maturation factor JBrowse link 12 24,669,626 24,680,833 RGD:1624291
G Dimt1 DIMT1 rRNA methyltransferase and ribosome maturation factor JBrowse link 2 38,120,562 38,144,871 RGD:1624291
G Heatr1 HEAT repeat containing 1 JBrowse link 17 66,446,135 66,488,303 RGD:1624291
G Riok1 RIO kinase 1 JBrowse link 17 27,429,421 27,452,353 RGD:1624291
G Riok2 RIO kinase 2 JBrowse link 1 59,130,008 59,146,457 RGD:1624291
G Sirt7 sirtuin 7 JBrowse link 10 109,796,046 109,802,821 RGD:1600115
RGD:1624291
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link 1 222,167,927 222,168,780 RGD:1624291
G Utp15 UTP15, small subunit processome component JBrowse link 2 28,351,925 28,370,315 RGD:1624291
G Wdr43 WD repeat domain 43 JBrowse link 6 23,433,532 23,473,179 RGD:1624291
G Wdr75 WD repeat domain 75 JBrowse link 9 52,687,845 52,717,808 RGD:1624291
regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ncl nucleolin JBrowse link 9 93,369,119 93,377,643 RGD:9588272
G Usp36 ubiquitin specific peptidase 36 JBrowse link 10 107,292,828 107,324,355 RGD:1624291
regulation of rRNA stability term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddx49 DEAD-box helicase 49 JBrowse link 16 20,873,585 20,881,312 RGD:1624291
rRNA (guanine-N7)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bud23 BUD23, rRNA methyltransferase and ribosome maturation factor JBrowse link 12 24,669,626 24,680,833 RGD:1624291
RGD:13792537
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link 1 222,167,927 222,168,780 RGD:1624291
RGD:13792537
rRNA 2'-O-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mrm1 mitochondrial rRNA methyltransferase 1 JBrowse link 10 72,136,241 72,143,075 RGD:1600115
G Mrm3 mitochondrial rRNA methyltransferase 3 JBrowse link 10 64,398,308 64,406,193 RGD:1600115
rRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eri1 exoribonuclease 1 JBrowse link 16 60,307,148 60,327,237 RGD:1624291
RGD:1600115
rRNA acetylation involved in maturation of SSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nat10 N-acetyltransferase 10 JBrowse link 3 93,658,119 93,698,136 RGD:13792537
rRNA base methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Emg1 EMG1 N1-specific pseudouridine methyltransferase JBrowse link 4 157,222,366 157,230,647 RGD:13792537
G Fdxacb1 ferredoxin-fold anticodon binding domain containing 1 JBrowse link 8 55,196,758 55,201,610 RGD:13792537
G Mettl15 methyltransferase like 15 JBrowse link 3 100,186,106 100,366,148 RGD:13792537
G Nop2 NOP2 nucleolar protein JBrowse link 4 157,646,759 157,658,502 RGD:13792537
G Nsun5 NOP2/Sun RNA methyltransferase 5 JBrowse link 12 24,341,940 24,346,900 RGD:13792537
RGD:1624291
rRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC118772.1 RGD:13792537
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease JBrowse link 15 83,466,330 83,494,107 RGD:1624291
RGD:13792537
G Dis3l DIS3-like exosome 3'-5' exoribonuclease JBrowse link 8 69,771,211 69,807,880 RGD:1624291
RGD:13792537
G Drosha drosha ribonuclease III JBrowse link 2 62,887,267 63,000,307 RGD:1600115
G Ern2 endoplasmic reticulum to nucleus signaling 2 JBrowse link 1 192,126,023 192,142,865 RGD:1624291
G Exosc4 exosome component 4 JBrowse link 7 117,390,302 117,393,044 RGD:13792537
G Exosc5 exosome component 5 JBrowse link 1 82,452,104 82,461,607 RGD:13792537
G Exosc6 exosome component 6 JBrowse link 19 43,190,879 43,193,164 RGD:13792537
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:13792537
G Slfn13 schlafen family member 13 JBrowse link 10 70,326,157 70,343,024 RGD:13601999
G Slfn14 schlafen family member 14 JBrowse link 10 70,493,340 70,504,810 RGD:1624291
G Trir telomerase RNA component interacting RNase JBrowse link 19 26,142,720 26,146,136 RGD:1624291
G Xrn1 5'-3' exoribonuclease 1 JBrowse link 8 103,774,125 103,883,563 RGD:1624291
RGD:13792537
rRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmt2 base methyltransferase of 25S rRNA 2 homolog JBrowse link 4 40,064,131 40,136,074 RGD:1600115
G Dimt1 DIMT1 rRNA methyltransferase and ribosome maturation factor JBrowse link 2 38,120,562 38,144,871 RGD:1624291
RGD:13792537
G Fbl fibrillarin JBrowse link 1 85,103,519 85,112,619 RGD:1600115
RGD:13792537
RGD:1624291
G Fbll1 fibrillarin-like 1 JBrowse link 10 20,620,957 20,622,600 RGD:13792537
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:13792537
G LOC103690007 5-methylcytosine rRNA methyltransferase NSUN4 JBrowse link 5 134,362,953 134,383,690 RGD:13792537
G Mettl5 methyltransferase like 5 JBrowse link 3 56,101,597 56,113,823 RGD:1624291
G Mrm2 mitochondrial rRNA methyltransferase 2 JBrowse link 12 16,398,749 16,403,656 RGD:1600115
G Nsun3 NOP2/Sun RNA methyltransferase 3 JBrowse link 11 38,535,971 38,590,274 RGD:13792537
G Nsun4 NOP2/Sun RNA methyltransferase 4 JBrowse link 5 134,885,377 134,905,492 RGD:1624291
RGD:13792537
G Tfb1m transcription factor B1, mitochondrial JBrowse link 1 44,433,116 44,474,674 RGD:1600115
RGD:13792537
G Tfb2m transcription factor B2, mitochondrial JBrowse link 13 97,820,493 97,838,275 RGD:13792537
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link 1 222,167,927 222,168,780 RGD:1624291
G Zcchc4 zinc finger CCHC-type containing 4 JBrowse link 14 60,511,494 60,553,167 RGD:1600115
RGD:13792537
RGD:1624291
rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link 7 117,514,529 117,538,342 RGD:1624291
G Bysl bystin-like JBrowse link 9 15,393,461 15,403,212 RGD:13792537
G Cdkn2a cyclin-dependent kinase inhibitor 2A JBrowse link 5 107,823,323 107,832,405 RGD:1600115
G Ddx10 DEAD-box helicase 10 JBrowse link 8 57,667,472 57,830,504 RGD:13792537
G Ddx21 DExD-box helicase 21 JBrowse link 20 32,213,147 32,232,632 RGD:1600115
G Ddx27 DEAD-box helicase 27 JBrowse link 3 163,767,236 163,786,408 RGD:1624291
G Ddx47 DEAD-box helicase 47 JBrowse link 4 168,775,134 168,787,594 RGD:1624291
RGD:13792537
G Ddx49 DEAD-box helicase 49 JBrowse link 16 20,873,585 20,881,312 RGD:13792537
G Ddx52 DExD-box helicase 52 JBrowse link 10 71,253,667 71,276,397 RGD:704356
G Ddx54 DEAD-box helicase 54 JBrowse link 12 41,469,642 41,484,887 RGD:13792537
G Ebna1bp2 EBNA1 binding protein 2 JBrowse link 5 137,458,692 137,463,255 RGD:13792537
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link 10 108,415,201 108,425,195 RGD:1600115
G Esf1 ESF1 nucleolar pre-rRNA processing protein homolog JBrowse link 3 133,178,591 133,232,358 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:1624291
G Gar1 GAR1 ribonucleoprotein JBrowse link 2 235,250,453 235,258,464 RGD:1600115
G Gemin4 gem (nuclear organelle) associated protein 4 JBrowse link 10 64,364,808 64,375,885 RGD:1600115
G Imp3 IMP U3 small nucleolar ribonucleoprotein 3 JBrowse link 8 61,607,021 61,607,909 RGD:1624291
RGD:13792537
G Imp4 IMP U3 small nucleolar ribonucleoprotein 4 JBrowse link 9 37,769,959 37,775,097 RGD:13792537
G Krr1 KRR1, small subunit processome component homolog JBrowse link 7 54,756,043 54,767,477 RGD:1600115
G LOC100362830 ribosomal protein S7-like JBrowse link 5 169,021,517 169,022,178 RGD:13792537
G LOC108348080 probable rRNA-processing protein EBP2 JBrowse link 5 137,670,134 137,674,730 RGD:13792537
G Lyar Ly1 antibody reactive JBrowse link 14 77,308,211 77,321,931 RGD:1600115
RGD:13792537
RGD:1624291
G Mphosph10 M-phase phosphoprotein 10 JBrowse link 1 125,212,869 125,229,060 RGD:1600115
G Mrto4 MRT4 homolog, ribosome maturation factor JBrowse link 5 157,814,142 157,820,889 RGD:13792537
G Mterf4 mitochondrial transcription termination factor 4 JBrowse link 9 100,440,482 100,445,158 RGD:1600115
G Mtrex Mtr4 exosome RNA helicase JBrowse link 2 44,726,716 44,787,013 RGD:1624291
G Naf1 nuclear assembly factor 1 ribonucleoprotein JBrowse link 16 24,582,000 24,612,773 RGD:1600115
G Nol6 nucleolar protein 6 JBrowse link 5 57,444,448 57,473,803 RGD:13792537
G Nol8 nucleolar protein 8 JBrowse link 17 14,565,794 14,589,154 RGD:1624291
G Nop53 NOP53 ribosome biogenesis factor JBrowse link 1 77,836,522 77,843,991 RGD:13792537
G Npm3 nucleophosmin/nucleoplasmin, 3 JBrowse link 1 265,504,105 265,506,080 RGD:1624291
G Nvl nuclear VCP-like JBrowse link 13 99,410,026 99,468,783 RGD:1624291
G Pa2g4 proliferation-associated 2G4 JBrowse link 7 2,979,587 2,987,055 RGD:1600115
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link 14 84,211,600 84,227,980 RGD:1624291
G Pih1d1 PIH1 domain containing 1 JBrowse link 1 101,151,240 101,156,806 RGD:13792537
G Pih1d2 PIH1 domain containing 2 JBrowse link 8 55,050,284 55,060,289 RGD:13792537
G Pin4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 JBrowse link X 72,004,413 72,011,667 RGD:1624291
G Pop4 POP4 homolog, ribonuclease P/MRP subunit JBrowse link 1 94,661,127 94,669,461 RGD:13792537
G Pop5 POP5 homolog, ribonuclease P/MRP subunit JBrowse link 12 47,138,346 47,143,152 RGD:13792537
G Rbfa ribosome binding factor A JBrowse link 18 76,704,223 76,714,387 RGD:1600115
G Rexo4 REX4 homolog, 3'-5' exonuclease JBrowse link 3 5,500,578 5,510,908 RGD:1600115
G Rnasel ribonuclease L JBrowse link 13 71,188,712 71,202,636 RGD:2291995
G Rpf1 ribosome production factor 1 homolog JBrowse link 2 252,368,316 252,382,838 RGD:13792537
G Rpl11 ribosomal protein L11 JBrowse link 5 154,390,809 154,394,412 RGD:1624291
RGD:1600115
G Rpl14 ribosomal protein L14 JBrowse link 8 129,240,528 129,243,400 RGD:1624291
G Rpl26 ribosomal protein L26 JBrowse link 10 55,492,417 55,495,547 RGD:1624291
G Rpl27 ribosomal protein L27 JBrowse link 10 89,352,864 89,356,563 RGD:1624291
RGD:1600115
G Rpl35a ribosomal protein L35a JBrowse link 11 70,963,223 70,967,146 RGD:1624291
G Rpl5 ribosomal protein L5 JBrowse link 14 2,860,963 2,867,397 RGD:1624291
G Rpl7 ribosomal protein L7 JBrowse link 5 2,633,517 2,636,525 RGD:1624291
G Rpp25 ribonuclease P and MRP subunit p25 JBrowse link 8 62,283,336 62,284,716 RGD:1600115
G Rps15 ribosomal protein S15 JBrowse link 7 12,282,134 12,283,573 RGD:1624291
G Rps16 ribosomal protein S16 JBrowse link 1 85,405,499 85,408,444 RGD:1624291
G Rps17 ribosomal protein S17 JBrowse link 1 143,167,329 143,169,915 RGD:1624291
G Rps19 ribosomal protein S19 JBrowse link 1 81,750,873 81,756,629 RGD:1624291
G Rps24 ribosomal protein S24 JBrowse link 16 757,390 762,091 RGD:1624291
G Rps27 ribosomal protein S27 JBrowse link 2 189,572,175 189,573,280 RGD:1624291
RGD:1600115
G Rps28 ribosomal protein S28 JBrowse link 7 18,682,071 18,683,440 RGD:1624291
G Rps6 ribosomal protein S6 JBrowse link 5 105,197,821 105,200,681 RGD:1624291
G Rps7 ribosomal protein S7 JBrowse link 6 47,899,525 47,904,389 RGD:1624291
RGD:13792537
G Rrp1 ribosomal RNA processing 1 JBrowse link 20 10,982,016 10,993,260 RGD:13792537
G Rrp12 ribosomal RNA processing 12 homolog JBrowse link 1 261,106,768 261,140,416 RGD:13792537
G Rrp1b ribosomal RNA processing 1B JBrowse link 20 10,844,234 10,869,830 RGD:13792537
G Rrp36 ribosomal RNA processing 36 JBrowse link 9 16,618,853 16,627,128 RGD:1624291
G Rrp7a ribosomal RNA processing 7 homolog A JBrowse link 7 123,980,251 123,990,139 RGD:13792537
G Rrp8 ribosomal RNA processing 8 JBrowse link 1 170,574,670 170,578,693 RGD:1600115
G Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein JBrowse link 8 115,179,899 115,188,551 RGD:1624291
G Sbds SBDS, ribosome maturation factor JBrowse link 12 29,921,443 29,930,602 RGD:1624291
G Utp11 UTP11, small subunit processome component JBrowse link 5 142,666,288 142,681,173 RGD:1600115
G Utp14a UTP14A small subunit processome component JBrowse link X 135,092,123 135,117,409 RGD:1600115
G Utp15 UTP15, small subunit processome component JBrowse link 2 28,351,925 28,370,315 RGD:13792537
G Utp20 UTP20 small subunit processome component JBrowse link 7 29,296,360 29,378,105 RGD:1624291
G Wbp11 WW domain binding protein 11 JBrowse link 4 170,772,166 170,785,613 RGD:1600115
G Wbp11l1 WW domain-binding protein 11-like 1 JBrowse link 4 170,154,257 170,167,724 RGD:1600115
G Wdr18 WD repeat domain 18 JBrowse link 7 12,561,318 12,569,120 RGD:13792537
G Wdr36 WD repeat domain 36 JBrowse link 18 25,637,475 25,665,801 RGD:13792537
G Wdr55 WD repeat domain 55 JBrowse link 18 29,605,217 29,608,730 RGD:1600115
RGD:13792537
G Wdr74 WD repeat domain 74 JBrowse link 1 224,933,906 224,938,659 RGD:1624291
G Ybey ybeY metalloendoribonuclease JBrowse link 20 12,917,111 12,926,587 RGD:1600115
rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:1624291
RGD:13792537
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 JBrowse link 10 37,069,387 37,072,758 RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:13792537
G Nop10 NOP10 ribonucleoprotein JBrowse link 3 103,747,654 103,748,739 RGD:13792537
snoRNA guided rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:633420
G Gar1 GAR1 ribonucleoprotein JBrowse link 2 235,250,453 235,258,464 RGD:633420
RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:633420
G Nop10 NOP10 ribonucleoprotein JBrowse link 3 103,747,654 103,748,739 RGD:633420

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19576
    metabolic process 11899
      organic substance metabolic process 11297
        macromolecule metabolic process 9765
          nucleic acid metabolic process 4782
            RNA metabolic process 4290
              ncRNA metabolic process 489
                rRNA metabolic process 242
                  nuclear rRNA polyadenylation involved in polyadenylation-dependent rRNA catabolic process 0
                  rRNA catabolic process + 20
                  rRNA processing + 230
Path 2
Term Annotations click to browse term
  biological_process 19576
    metabolic process 11899
      cellular metabolic process 10737
        cellular aromatic compound metabolic process 5503
          nucleobase-containing compound metabolic process 5276
            nucleic acid metabolic process 4782
              RNA metabolic process 4290
                ncRNA metabolic process 489
                  rRNA metabolic process 242
                    nuclear rRNA polyadenylation involved in polyadenylation-dependent rRNA catabolic process 0
                    rRNA catabolic process + 20
                    rRNA processing + 230
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.